Wall clock time and date at job start Tue Mar 31 2020 05:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30928 * 1 3 3 Si 1.86797 * 120.00358 * 2 1 4 4 H 1.48504 * 109.47093 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47219 * 120.00219 * 3 2 1 6 6 H 1.48499 * 109.47634 * 240.00383 * 3 2 1 7 7 C 1.39860 * 119.99924 * 180.28208 * 2 1 3 8 8 H 1.07999 * 119.99957 * 355.22239 * 7 2 1 9 9 C 1.39627 * 120.00151 * 175.22301 * 7 2 1 10 10 N 1.31430 * 125.04953 * 190.28963 * 9 7 2 11 11 C 1.31256 * 117.21670 * 179.97438 * 10 9 7 12 12 C 1.47154 * 122.67861 * 179.97438 * 11 10 9 13 13 C 1.36395 * 125.34002 * 325.02403 * 12 11 10 14 14 C 1.37686 * 114.40969 * 180.02562 * 13 12 11 15 15 C 1.33800 * 115.19918 * 359.97438 * 14 13 12 16 16 S 1.75827 * 109.98258 * 359.73990 * 15 14 13 17 17 C 1.39158 * 114.63796 * 359.97438 * 11 10 9 18 18 N 1.37847 * 125.99659 * 180.02562 * 17 11 10 19 19 C 1.34770 * 119.99979 * 180.02562 * 18 17 11 20 20 O 1.21563 * 120.00338 * 359.97438 * 19 18 17 21 21 C 1.47765 * 119.99763 * 179.97438 * 19 18 17 22 22 C 1.39621 * 120.14740 * 359.72540 * 21 19 18 23 23 C 1.37954 * 119.84530 * 179.78725 * 22 21 19 24 24 C 1.38365 * 120.14791 * 0.48763 * 23 22 21 25 25 C 1.38371 * 120.30226 * 359.74277 * 24 23 22 26 26 C 1.37936 * 120.15125 * 0.02562 * 25 24 23 27 27 S 1.76021 * 125.04845 * 9.98564 * 9 7 2 28 28 H 0.97001 * 120.00121 * 179.16822 * 1 2 3 29 29 H 1.08006 * 122.78868 * 359.97438 * 13 12 11 30 30 H 1.08000 * 122.40065 * 180.02562 * 14 13 12 31 31 H 1.07998 * 125.01259 * 180.02562 * 15 14 13 32 32 H 0.97002 * 119.99354 * 359.97438 * 18 17 11 33 33 H 1.07999 * 120.07710 * 0.02562 * 22 21 19 34 34 H 1.08000 * 119.92146 * 180.25503 * 23 22 21 35 35 H 1.08001 * 119.84634 * 179.71840 * 24 23 22 36 36 H 1.08008 * 119.92076 * 180.02562 * 25 24 23 37 37 H 1.08002 * 120.07859 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2434 1.6176 0.0000 4 1 1.2784 2.7465 0.0006 5 1 3.0972 1.6963 1.2125 6 1 3.0971 1.6964 -1.2125 7 6 2.0086 -1.2112 -0.0060 8 1 1.4714 -2.1453 0.0673 9 6 3.4012 -1.2129 -0.1067 10 7 4.1417 -2.2788 -0.3138 11 6 5.4406 -2.1032 -0.3827 12 6 6.3813 -3.2118 -0.6099 13 6 6.2332 -4.4819 -0.1355 14 6 7.2507 -5.3417 -0.4837 15 6 8.2219 -4.8025 -1.2296 16 16 7.8690 -3.1086 -1.5425 17 6 5.8571 -0.7849 -0.2237 18 7 7.1607 -0.3378 -0.2545 19 6 7.4278 0.9723 -0.0853 20 8 6.5193 1.7598 0.0940 21 6 8.8253 1.4515 -0.1178 22 6 9.8716 0.5489 -0.3178 23 6 11.1736 1.0037 -0.3514 24 6 11.4443 2.3494 -0.1773 25 6 10.4125 3.2485 0.0261 26 6 9.1057 2.8081 0.0572 27 16 4.4253 0.2133 0.0174 28 1 -0.4850 -0.8400 -0.0122 29 1 5.3885 -4.7875 0.4641 30 1 7.2636 -6.3772 -0.1774 31 1 9.0918 -5.3310 -1.5906 32 1 7.8856 -0.9662 -0.3973 33 1 9.6619 -0.5023 -0.4498 34 1 11.9836 0.3072 -0.5101 35 1 12.4658 2.6994 -0.2000 36 1 10.6308 4.2977 0.1609 37 1 8.3012 3.5108 0.2165 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008917155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:20 Heat of formation + Delta-G solvation = 49.840479 kcal Electronic energy + Delta-G solvation = -25348.708748 eV Core-core repulsion = 21694.540921 eV Total energy + Delta-G solvation = -3654.167827 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 356.039 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.17317 -38.50427 -37.92430 -36.77723 -34.71074 -33.86658 -31.47206 -31.07511 -30.29948 -28.15248 -26.19460 -24.40639 -23.41845 -22.59313 -21.89027 -20.68669 -19.81372 -19.06101 -18.46978 -17.90877 -17.12876 -16.44277 -15.80878 -15.59354 -15.22946 -14.97967 -14.87548 -14.51757 -14.06197 -13.80818 -13.64334 -13.46811 -13.34266 -12.78051 -12.70650 -12.50378 -12.42831 -12.15230 -11.89834 -11.78537 -11.40513 -11.26561 -11.24784 -10.70729 -10.42954 -10.08525 -9.68555 -9.61622 -9.18133 -9.15053 -9.11222 -8.71829 -8.33335 -7.93912 -7.71493 -7.44378 -7.13242 -4.73689 0.69429 1.03695 1.19507 1.70157 2.05643 2.25687 2.34343 2.93110 3.00939 3.05294 3.19284 3.21374 3.51645 3.61763 3.81163 3.84569 4.14678 4.64746 4.71143 4.75483 4.95515 5.03473 5.18390 5.19973 5.27595 5.34005 5.62122 5.64484 5.80207 5.86185 6.09886 6.16216 6.24483 6.26430 6.40545 6.57748 6.68235 6.73425 6.78310 7.14741 7.17355 7.64451 7.76875 7.95945 8.18189 8.47876 9.42676 9.66661 Molecular weight = 356.04amu Principal moments of inertia in cm(-1) A = 0.008315 B = 0.004940 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3366.582880 B = 5666.219702 C = 8903.486935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.057 3.943 3 Si 0.911 3.089 4 H -0.221 1.221 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.414 4.414 8 H 0.103 0.897 9 C 0.190 3.810 10 N -0.571 5.571 11 C 0.150 3.850 12 C -0.075 4.075 13 C -0.131 4.131 14 C -0.119 4.119 15 C -0.235 4.235 16 S 0.077 5.923 17 C -0.144 4.144 18 N -0.598 5.598 19 C 0.528 3.472 20 O -0.513 6.513 21 C -0.119 4.119 22 C -0.092 4.092 23 C -0.126 4.126 24 C -0.101 4.101 25 C -0.128 4.128 26 C -0.061 4.061 27 S 0.034 5.966 28 H 0.294 0.706 29 H 0.145 0.855 30 H 0.138 0.862 31 H 0.161 0.839 32 H 0.398 0.602 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.821 0.515 -0.856 18.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.169 4.169 3 Si 0.734 3.266 4 H -0.144 1.144 5 H -0.124 1.124 6 H -0.124 1.124 7 C -0.458 4.458 8 H 0.121 0.879 9 C -0.062 4.062 10 N -0.293 5.293 11 C 0.008 3.992 12 C -0.195 4.195 13 C -0.162 4.162 14 C -0.150 4.150 15 C -0.371 4.371 16 S 0.340 5.660 17 C -0.363 4.363 18 N -0.243 5.243 19 C 0.315 3.685 20 O -0.391 6.391 21 C -0.122 4.122 22 C -0.111 4.111 23 C -0.144 4.144 24 C -0.119 4.119 25 C -0.146 4.146 26 C -0.080 4.080 27 S 0.287 5.713 28 H 0.106 0.894 29 H 0.162 0.838 30 H 0.156 0.844 31 H 0.178 0.822 32 H 0.237 0.763 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 18.194 4.425 -1.414 18.778 hybrid contribution 0.483 -4.051 0.499 4.110 sum 18.677 0.374 -0.915 18.703 Atomic orbital electron populations 1.70599 1.07410 1.33273 1.29599 1.27134 0.95868 1.03461 0.90472 0.84620 0.79624 0.76929 0.85436 1.14369 1.12410 1.12401 1.20020 0.89016 0.97229 1.39524 0.87880 1.23927 0.97293 0.88718 0.96222 1.66855 1.01374 1.29354 1.31670 1.17743 0.89924 0.86771 1.04804 1.22625 0.97550 0.96658 1.02647 1.20665 1.00527 0.91480 1.03519 1.20055 0.94217 1.00888 0.99817 1.25538 1.05345 0.97256 1.08925 1.83839 1.19159 1.10190 1.52828 1.23569 0.89010 0.95924 1.27769 1.41999 1.05858 1.08119 1.68316 1.18301 0.88891 0.82160 0.79150 1.90721 1.45871 1.53609 1.48907 1.19920 0.92378 0.94950 1.04974 1.21385 0.92733 0.99208 0.97743 1.21083 0.96265 0.96030 1.00995 1.21351 0.99361 0.93388 0.97814 1.21159 0.92346 1.00085 1.00976 1.21321 0.97274 0.94387 0.94990 1.85976 0.96896 1.12010 1.76440 0.89444 0.83751 0.84416 0.82166 0.76341 0.85836 0.85380 0.85653 0.85315 0.84431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.70 13.66 55.54 0.76 -18.94 16 2 C 0.06 1.42 5.52 -17.33 -0.10 1.33 16 3 Si 0.91 20.22 24.48 -169.99 -4.16 16.06 16 4 H -0.22 -4.55 7.11 56.52 0.40 -4.15 16 5 H -0.20 -4.35 6.29 60.78 0.38 -3.97 16 6 H -0.20 -4.43 6.35 59.20 0.38 -4.06 16 7 C -0.41 -10.90 9.85 -38.46 -0.38 -11.28 16 8 H 0.10 2.78 8.05 -52.49 -0.42 2.35 16 9 C 0.19 5.02 6.92 -17.21 -0.12 4.90 16 10 N -0.57 -14.91 10.54 -9.43 -0.10 -15.01 16 11 C 0.15 3.53 6.64 -84.15 -0.56 2.97 16 12 C -0.08 -1.48 6.16 -36.63 -0.23 -1.70 16 13 C -0.13 -2.30 10.14 -40.45 -0.41 -2.71 16 14 C -0.12 -1.65 10.15 -41.34 -0.42 -2.07 16 15 C -0.23 -3.01 11.22 29.17 0.33 -2.68 16 16 S 0.08 1.17 20.93 -107.50 -2.25 -1.08 16 17 C -0.14 -3.36 7.23 -14.50 -0.10 -3.47 16 18 N -0.60 -11.74 5.23 -10.84 -0.06 -11.79 16 19 C 0.53 10.14 7.73 -12.37 -0.10 10.05 16 20 O -0.51 -11.45 13.90 5.31 0.07 -11.38 16 21 C -0.12 -1.77 5.87 -104.97 -0.62 -2.38 16 22 C -0.09 -1.10 9.54 -39.17 -0.37 -1.48 16 23 C -0.13 -1.20 10.03 -39.64 -0.40 -1.59 16 24 C -0.10 -0.89 10.04 -39.49 -0.40 -1.29 16 25 C -0.13 -1.27 10.03 -39.64 -0.40 -1.67 16 26 C -0.06 -0.79 9.60 -39.17 -0.38 -1.17 16 27 S 0.03 0.85 12.60 -107.50 -1.35 -0.50 16 28 H 0.29 7.07 8.72 -40.82 -0.36 6.71 16 29 H 0.14 2.59 8.06 -52.48 -0.42 2.17 16 30 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.40 6.65 4.17 -40.82 -0.17 6.48 16 33 H 0.12 1.36 6.41 -52.49 -0.34 1.02 16 34 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.14 1.82 7.65 -52.49 -0.40 1.42 16 LS Contribution 341.12 15.07 5.14 5.14 Total: -1.00 -30.65 341.12 -9.65 -40.30 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -3.06 Total: 11.46 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -4.64 Total: -14.25 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.60 Total: -45.75 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.07 Total: -11.38 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.16 Total: 16.06 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -3.60 Total: -1.59 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.65 -9.65 -40.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008917155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.141 kcal (2) G-P(sol) polarization free energy of solvation -30.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds