Wall clock time and date at job start Tue Mar 31 2020 06:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34718 * 117.00243 * 2 1 4 4 O 1.21461 * 120.00066 * 359.97438 * 3 2 1 5 5 C 1.47769 * 119.99551 * 180.02562 * 3 2 1 6 6 C 1.38964 * 121.01577 * 38.22473 * 5 3 2 7 7 C 1.40077 * 119.25493 * 179.97438 * 6 5 3 8 8 C 1.47581 * 119.32108 * 180.02562 * 7 6 5 9 9 C 1.34961 * 125.27738 * 179.69671 * 8 7 6 10 10 C 1.37801 * 114.70685 * 179.79399 * 9 8 7 11 11 C 1.33731 * 115.07670 * 0.49890 * 10 9 8 12 12 S 1.75858 * 109.76132 * 359.73372 * 11 10 9 13 13 N 1.32511 * 121.35750 * 0.02562 * 7 6 5 14 14 C 1.32433 * 121.87349 * 359.97438 * 13 7 6 15 15 C 1.40969 * 120.37114 * 0.02562 * 14 13 7 16 16 C 1.41029 * 107.12869 * 180.02562 * 15 14 13 17 17 C 1.50703 * 125.69285 * 180.02562 * 16 15 14 18 18 N 1.30280 * 108.61582 * 359.97438 * 16 15 14 19 19 N 1.37129 * 133.28239 * 180.02562 * 14 13 7 20 20 C 1.46495 * 125.91835 * 0.25474 * 19 14 13 21 21 C 1.50699 * 109.47645 * 269.71754 * 20 19 14 22 22 H 1.08000 * 119.99788 * 0.02562 * 21 20 19 23 23 C 1.37868 * 120.00348 * 180.02562 * 21 20 19 24 24 N 1.31516 * 120.00196 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00197 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46935 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47360 * 120.00076 * 25 23 21 28 28 H 1.48503 * 109.46807 * 240.00192 * 25 23 21 29 29 H 1.09007 * 109.46657 * 60.00151 * 1 2 3 30 30 H 1.08991 * 109.47537 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47058 * 300.01026 * 1 2 3 32 32 H 1.08000 * 120.36952 * 0.02562 * 6 5 3 33 33 H 1.08001 * 122.64518 * 0.02562 * 9 8 7 34 34 H 1.08001 * 122.46070 * 180.23297 * 10 9 8 35 35 H 1.08000 * 125.11976 * 179.75257 * 11 10 9 36 36 H 1.09001 * 109.47035 * 275.95863 * 17 16 15 37 37 H 1.08996 * 109.47498 * 35.95926 * 17 16 15 38 38 H 1.09000 * 109.47126 * 155.96396 * 17 16 15 39 39 H 1.09000 * 109.47366 * 29.72029 * 20 19 14 40 40 H 1.09008 * 109.47012 * 149.71761 * 20 19 14 41 41 H 0.97002 * 120.00380 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2003 0.0000 4 8 1.4022 2.2190 -0.0005 5 6 3.5393 1.2775 -0.0006 6 6 4.3030 0.3807 -0.7380 7 6 5.6994 0.4879 -0.7123 8 6 6.5118 -0.4634 -1.4953 9 6 7.8597 -0.4666 -1.5620 10 6 8.3948 -1.4571 -2.3567 11 6 7.4991 -2.2554 -2.9475 12 16 5.8731 -1.7640 -2.4924 13 7 6.3060 1.4259 0.0006 14 6 5.6269 2.3055 0.7210 15 6 4.2180 2.2671 0.7500 16 6 3.7912 3.3152 1.5915 17 6 2.3593 3.6531 1.9179 18 7 4.8414 3.9419 2.0405 19 7 6.0012 3.3500 1.5267 20 6 7.3763 3.7765 1.7977 21 6 7.8985 3.0488 3.0096 22 1 7.2691 2.3392 3.5262 23 6 9.1795 3.2889 3.4590 24 7 9.9458 4.1533 2.8303 25 14 9.8271 2.3863 4.9609 26 1 8.7764 1.4755 5.4822 27 1 11.0261 1.5954 4.5844 28 1 10.1931 3.3710 6.0105 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 3.8251 -0.3897 -1.3249 33 1 8.4710 0.2482 -1.0312 34 1 9.4590 -1.5770 -2.4959 35 1 7.7384 -3.0782 -3.6049 36 1 1.9468 4.2852 1.1314 37 1 1.7764 2.7349 1.9891 38 1 2.3189 4.1839 2.8691 39 1 8.0043 3.5463 0.9371 40 1 7.3937 4.8505 1.9833 41 1 10.8470 4.3225 3.1467 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012396331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:13 Heat of formation + Delta-G solvation = 57.854384 kcal Electronic energy + Delta-G solvation = -28629.400351 eV Core-core repulsion = 24603.234345 eV Total energy + Delta-G solvation = -4026.166006 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 357.093 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.56228 -40.28061 -38.48111 -37.14766 -36.63239 -34.32107 -32.93256 -31.84368 -31.21953 -29.08267 -28.22231 -28.06594 -26.20247 -25.18097 -24.04886 -23.08524 -21.97929 -21.46640 -19.40649 -19.27271 -17.92414 -17.51731 -16.94572 -16.84463 -16.72318 -16.54380 -16.06820 -15.40747 -15.07755 -14.76160 -14.25103 -13.77397 -13.67560 -13.58706 -13.42302 -13.10085 -12.88187 -12.73631 -12.60339 -12.52606 -12.31016 -12.20294 -12.10758 -11.72213 -11.58474 -11.02239 -10.95691 -10.89244 -10.87275 -10.73194 -10.44205 -10.40073 -10.28197 -9.64588 -9.33389 -9.29006 -8.63937 -8.52113 -8.01419 -7.77953 -6.25313 -4.32306 0.22517 0.75867 1.44840 1.63896 1.87924 2.19590 2.47725 2.74383 2.86509 2.99004 3.21144 3.28482 3.34986 3.98288 4.21797 4.30122 4.45459 4.61685 4.80655 4.88629 4.90853 4.97483 4.99993 5.10361 5.18362 5.31092 5.37012 5.46519 5.55023 5.64280 5.81217 5.87418 5.95622 6.04834 6.13788 6.15464 6.24430 6.42294 6.48446 6.68397 6.97507 7.05969 7.41479 7.53657 7.70619 7.85975 7.96274 8.28513 8.71049 9.33160 10.82572 Molecular weight = 357.09amu Principal moments of inertia in cm(-1) A = 0.006930 B = 0.004462 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4039.406767 B = 6274.324322 C = 9562.933205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.350 6.350 3 C 0.512 3.488 4 O -0.482 6.482 5 C 0.004 3.996 6 C -0.162 4.162 7 C 0.249 3.751 8 C -0.148 4.148 9 C -0.086 4.086 10 C -0.135 4.135 11 C -0.210 4.210 12 S 0.125 5.875 13 N -0.449 5.449 14 C 0.323 3.677 15 C -0.188 4.188 16 C 0.076 3.924 17 C -0.061 4.061 18 N -0.218 5.218 19 N -0.334 5.334 20 C 0.264 3.736 21 C -0.534 4.534 22 H 0.063 0.937 23 C 0.068 3.932 24 N -0.890 5.890 25 Si 0.906 3.094 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.144 0.856 33 H 0.156 0.844 34 H 0.144 0.856 35 H 0.166 0.834 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.573 -12.473 -11.337 21.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.267 6.267 3 C 0.355 3.645 4 O -0.368 6.368 5 C -0.008 4.008 6 C -0.185 4.185 7 C 0.097 3.903 8 C -0.266 4.266 9 C -0.118 4.118 10 C -0.165 4.165 11 C -0.347 4.347 12 S 0.389 5.611 13 N -0.163 5.163 14 C 0.079 3.921 15 C -0.200 4.200 16 C -0.097 4.097 17 C -0.120 4.120 18 N -0.036 5.036 19 N -0.121 5.121 20 C 0.148 3.852 21 C -0.573 4.573 22 H 0.081 0.919 23 C -0.136 4.136 24 N -0.528 5.528 25 Si 0.733 3.267 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.084 0.916 32 H 0.162 0.838 33 H 0.174 0.826 34 H 0.162 0.838 35 H 0.184 0.816 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.564 -11.395 -10.799 20.747 hybrid contribution 0.811 -0.612 0.658 1.211 sum -12.752 -12.007 -10.141 20.239 Atomic orbital electron populations 1.23324 0.75862 1.03885 1.02784 1.86622 1.23609 1.32315 1.84116 1.21026 0.88605 0.81748 0.73097 1.90857 1.66422 1.35692 1.43837 1.18481 0.88902 0.95268 0.98138 1.21794 0.93413 1.00117 1.03143 1.18379 0.88543 0.91023 0.92385 1.22468 0.96355 1.01683 1.06073 1.20628 0.93547 0.99131 0.98499 1.20176 1.01213 0.96043 0.99081 1.25832 0.95457 1.05884 1.07518 1.83974 1.08016 1.25900 1.43246 1.66330 1.40071 1.02765 1.07102 1.18748 0.88058 0.91427 0.93840 1.19141 0.94089 1.00823 1.05910 1.22139 0.96443 0.94107 0.97012 1.20251 0.87106 1.02429 1.02196 1.76906 0.90791 1.19085 1.16838 1.49626 1.07452 1.21081 1.33902 1.19846 0.69403 0.97446 0.98513 1.21292 0.99094 1.25036 1.11882 0.91890 1.24885 0.96117 0.95104 0.97457 1.69926 1.09082 1.33657 1.40145 0.86301 0.78870 0.79542 0.81975 1.19650 1.20555 1.20598 0.91666 0.87892 0.91614 0.83818 0.82610 0.83818 0.81623 0.89797 0.91001 0.91092 0.92169 0.92582 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.57 101.05 1.07 1.34 16 2 O -0.35 -4.09 10.44 -40.54 -0.42 -4.52 16 3 C 0.51 7.30 6.95 34.63 0.24 7.54 16 4 O -0.48 -7.25 12.99 -19.23 -0.25 -7.50 16 5 C 0.00 0.06 5.86 -104.48 -0.61 -0.55 16 6 C -0.16 -2.44 9.26 -38.62 -0.36 -2.80 16 7 C 0.25 4.26 6.74 -83.07 -0.56 3.70 16 8 C -0.15 -2.16 6.37 -36.94 -0.24 -2.39 16 9 C -0.09 -1.22 9.82 -40.90 -0.40 -1.62 16 10 C -0.13 -1.51 10.16 -41.32 -0.42 -1.93 16 11 C -0.21 -2.03 11.23 29.15 0.33 -1.71 16 12 S 0.12 1.34 22.17 -107.50 -2.38 -1.05 16 13 N -0.45 -9.33 9.90 -8.99 -0.09 -9.42 16 14 C 0.32 7.16 8.00 -156.09 -1.25 5.91 16 15 C -0.19 -3.67 5.98 -106.55 -0.64 -4.31 16 16 C 0.08 1.47 7.21 -82.19 -0.59 0.88 16 17 C -0.06 -0.93 8.58 36.01 0.31 -0.62 16 18 N -0.22 -4.89 12.44 33.82 0.42 -4.47 16 19 N -0.33 -8.05 3.65 -61.59 -0.22 -8.28 16 20 C 0.26 6.97 6.20 -5.20 -0.03 6.93 16 21 C -0.53 -15.05 9.39 -34.44 -0.32 -15.38 16 22 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 23 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 24 N -0.89 -25.35 13.29 55.43 0.74 -24.62 16 25 Si 0.91 21.48 29.54 -169.99 -5.02 16.45 16 26 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.14 1.72 7.22 -52.49 -0.38 1.34 16 33 H 0.16 2.46 7.96 -52.49 -0.42 2.05 16 34 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.08 1.21 7.76 -51.93 -0.40 0.80 16 37 H 0.07 1.02 6.11 -51.93 -0.32 0.70 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 1.64 8.14 -51.93 -0.42 1.21 16 40 H 0.06 1.53 8.14 -51.92 -0.42 1.11 16 41 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 373.64 15.07 5.63 5.63 Total: -1.00 -31.88 373.64 -9.62 -41.50 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -4.44 Total: -0.52 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -3.57 Total: -3.22 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.84 Total: -46.78 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.67 Total: -12.01 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.38 Total: -1.05 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.88 -9.62 -41.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012396331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.355 kcal (2) G-P(sol) polarization free energy of solvation -31.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds