Wall clock time and date at job start Tue Mar 31 2020 06:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34718 * 117.00243 * 2 1 4 4 O 1.21461 * 120.00066 * 359.97438 * 3 2 1 5 5 C 1.47769 * 119.99551 * 180.02562 * 3 2 1 6 6 C 1.38964 * 121.01577 * 38.22473 * 5 3 2 7 7 C 1.40077 * 119.25493 * 179.97438 * 6 5 3 8 8 C 1.47581 * 119.32108 * 180.02562 * 7 6 5 9 9 C 1.34961 * 125.27738 * 179.69671 * 8 7 6 10 10 C 1.37801 * 114.70685 * 179.79399 * 9 8 7 11 11 C 1.33731 * 115.07670 * 0.49890 * 10 9 8 12 12 S 1.75858 * 109.76132 * 359.73372 * 11 10 9 13 13 N 1.32511 * 121.35750 * 0.02562 * 7 6 5 14 14 C 1.32433 * 121.87349 * 359.97438 * 13 7 6 15 15 C 1.40969 * 120.37114 * 0.02562 * 14 13 7 16 16 C 1.41029 * 107.12869 * 180.02562 * 15 14 13 17 17 C 1.50703 * 125.69285 * 180.02562 * 16 15 14 18 18 N 1.30280 * 108.61582 * 359.97438 * 16 15 14 19 19 N 1.37129 * 133.28239 * 180.02562 * 14 13 7 20 20 C 1.46495 * 125.91835 * 0.25474 * 19 14 13 21 21 C 1.50699 * 109.47645 * 269.71754 * 20 19 14 22 22 H 1.08000 * 119.99788 * 0.02562 * 21 20 19 23 23 C 1.37868 * 120.00348 * 180.02562 * 21 20 19 24 24 N 1.31516 * 120.00196 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00197 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.46935 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47360 * 120.00076 * 25 23 21 28 28 H 1.48503 * 109.46807 * 240.00192 * 25 23 21 29 29 H 1.09007 * 109.46657 * 60.00151 * 1 2 3 30 30 H 1.08991 * 109.47537 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47058 * 300.01026 * 1 2 3 32 32 H 1.08000 * 120.36952 * 0.02562 * 6 5 3 33 33 H 1.08001 * 122.64518 * 0.02562 * 9 8 7 34 34 H 1.08001 * 122.46070 * 180.23297 * 10 9 8 35 35 H 1.08000 * 125.11976 * 179.75257 * 11 10 9 36 36 H 1.09001 * 109.47035 * 275.95863 * 17 16 15 37 37 H 1.08996 * 109.47498 * 35.95926 * 17 16 15 38 38 H 1.09000 * 109.47126 * 155.96396 * 17 16 15 39 39 H 1.09000 * 109.47366 * 29.72029 * 20 19 14 40 40 H 1.09008 * 109.47012 * 149.71761 * 20 19 14 41 41 H 0.97002 * 120.00380 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2003 0.0000 4 8 1.4022 2.2190 -0.0005 5 6 3.5393 1.2775 -0.0006 6 6 4.3030 0.3807 -0.7380 7 6 5.6994 0.4879 -0.7123 8 6 6.5118 -0.4634 -1.4953 9 6 7.8597 -0.4666 -1.5620 10 6 8.3948 -1.4571 -2.3567 11 6 7.4991 -2.2554 -2.9475 12 16 5.8731 -1.7640 -2.4924 13 7 6.3060 1.4259 0.0006 14 6 5.6269 2.3055 0.7210 15 6 4.2180 2.2671 0.7500 16 6 3.7912 3.3152 1.5915 17 6 2.3593 3.6531 1.9179 18 7 4.8414 3.9419 2.0405 19 7 6.0012 3.3500 1.5267 20 6 7.3763 3.7765 1.7977 21 6 7.8985 3.0488 3.0096 22 1 7.2691 2.3392 3.5262 23 6 9.1795 3.2889 3.4590 24 7 9.9458 4.1533 2.8303 25 14 9.8271 2.3863 4.9609 26 1 8.7764 1.4755 5.4822 27 1 11.0261 1.5954 4.5844 28 1 10.1931 3.3710 6.0105 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 3.8251 -0.3897 -1.3249 33 1 8.4710 0.2482 -1.0312 34 1 9.4590 -1.5770 -2.4959 35 1 7.7384 -3.0782 -3.6049 36 1 1.9468 4.2852 1.1314 37 1 1.7764 2.7349 1.9891 38 1 2.3189 4.1839 2.8691 39 1 8.0043 3.5463 0.9371 40 1 7.3937 4.8505 1.9833 41 1 10.8470 4.3225 3.1467 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012396331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:12 Heat of formation + Delta-G solvation = 39.807908 kcal Electronic energy + Delta-G solvation = -28630.182905 eV Core-core repulsion = 24603.234345 eV Total energy + Delta-G solvation = -4026.948560 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 357.093 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.01371 -41.38307 -39.78231 -38.25617 -37.64231 -36.10731 -34.72054 -33.31248 -32.58199 -30.75682 -29.41846 -28.83668 -27.97046 -26.40960 -25.33987 -24.63009 -23.45544 -22.68027 -20.75625 -20.31195 -19.24647 -18.89885 -18.57734 -18.30454 -18.05349 -17.63860 -17.17856 -16.71204 -16.60054 -16.33903 -15.59604 -15.09092 -14.89386 -14.73352 -14.62890 -14.53826 -14.27069 -14.00816 -13.88377 -13.80797 -13.50944 -13.39829 -13.19081 -13.07259 -12.96367 -12.84046 -12.74010 -12.39499 -12.01218 -11.96041 -11.93759 -11.79720 -11.68126 -11.51340 -10.80221 -10.69661 -10.60637 -9.44898 -9.39386 -9.23202 -8.38619 -6.56221 -1.05643 -0.41591 0.38170 0.47461 0.96667 0.99826 1.23053 1.31707 1.32599 1.36031 1.47424 1.52278 1.82999 2.28656 2.58890 2.88955 2.94962 3.19951 3.23738 3.46587 3.60155 3.97578 4.02669 4.14344 4.25579 4.34603 4.42177 4.44545 4.57258 4.60368 4.66240 4.71617 4.75211 4.78438 4.80560 4.98635 5.02007 5.16392 5.17232 5.37523 5.43165 5.45256 5.48860 5.72561 5.79307 6.40229 6.48038 6.49291 6.78160 7.13883 8.68999 Molecular weight = 357.09amu Principal moments of inertia in cm(-1) A = 0.006930 B = 0.004462 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4039.406767 B = 6274.324322 C = 9562.933205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.347 6.347 3 C 0.521 3.479 4 O -0.491 6.491 5 C 0.007 3.993 6 C -0.148 4.148 7 C 0.255 3.745 8 C -0.196 4.196 9 C -0.092 4.092 10 C -0.155 4.155 11 C -0.182 4.182 12 S 0.186 5.814 13 N -0.496 5.496 14 C 0.301 3.699 15 C -0.208 4.208 16 C 0.090 3.910 17 C -0.055 4.055 18 N -0.262 5.262 19 N -0.367 5.367 20 C 0.287 3.713 21 C -0.553 4.553 22 H 0.045 0.955 23 C 0.023 3.977 24 N -0.917 5.917 25 Si 0.974 3.026 26 H -0.275 1.275 27 H -0.267 1.267 28 H -0.267 1.267 29 H 0.072 0.928 30 H 0.137 0.863 31 H 0.068 0.932 32 H 0.182 0.818 33 H 0.123 0.877 34 H 0.163 0.837 35 H 0.208 0.792 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.036 0.964 40 H 0.033 0.967 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.591 -16.239 -12.768 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.263 6.263 3 C 0.364 3.636 4 O -0.378 6.378 5 C -0.005 4.005 6 C -0.170 4.170 7 C 0.104 3.896 8 C -0.314 4.314 9 C -0.126 4.126 10 C -0.184 4.184 11 C -0.318 4.318 12 S 0.450 5.550 13 N -0.211 5.211 14 C 0.059 3.941 15 C -0.220 4.220 16 C -0.083 4.083 17 C -0.113 4.113 18 N -0.079 5.079 19 N -0.154 5.154 20 C 0.168 3.832 21 C -0.592 4.592 22 H 0.064 0.936 23 C -0.178 4.178 24 N -0.556 5.556 25 Si 0.798 3.202 26 H -0.200 1.200 27 H -0.192 1.192 28 H -0.192 1.192 29 H 0.091 0.909 30 H 0.155 0.845 31 H 0.087 0.913 32 H 0.200 0.800 33 H 0.141 0.859 34 H 0.181 0.819 35 H 0.225 0.775 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.619 -15.175 -12.248 24.984 hybrid contribution 1.331 0.312 0.857 1.614 sum -14.287 -14.863 -11.391 23.554 Atomic orbital electron populations 1.23748 0.73213 1.06355 1.03339 1.86601 1.25994 1.30347 1.83362 1.20527 0.87438 0.82521 0.73141 1.90853 1.66302 1.36284 1.44392 1.18747 0.90813 0.94047 0.96906 1.22163 0.92430 1.00111 1.02262 1.19006 0.90017 0.89839 0.90764 1.22629 0.96751 1.03731 1.08272 1.20669 0.93664 0.99450 0.98786 1.20263 1.02705 0.95897 0.99528 1.26398 0.94552 1.05256 1.05616 1.83685 1.07830 1.22723 1.40762 1.66344 1.41419 1.04312 1.09012 1.19051 0.89572 0.91423 0.94054 1.19295 0.93179 1.02226 1.07295 1.22867 0.97413 0.92902 0.95168 1.20391 0.84307 1.03410 1.03172 1.76819 0.91017 1.20905 1.19193 1.49232 1.06929 1.22978 1.36252 1.19194 0.71249 0.95774 0.96955 1.21395 0.99682 1.25345 1.12729 0.93642 1.25764 0.95978 0.95693 1.00369 1.70016 1.09565 1.34468 1.41513 0.85271 0.78231 0.78465 0.78271 1.19981 1.19157 1.19187 0.90925 0.84495 0.91332 0.80032 0.85879 0.81908 0.77509 0.88637 0.89605 0.89827 0.94573 0.94941 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.57 113.37 1.20 1.50 16 2 O -0.35 -6.95 10.44 -56.27 -0.59 -7.53 16 3 C 0.52 13.73 6.95 70.34 0.49 14.22 16 4 O -0.49 -13.75 12.99 19.96 0.26 -13.49 16 5 C 0.01 0.21 5.86 -19.77 -0.12 0.10 16 6 C -0.15 -4.28 9.26 22.89 0.21 -4.07 16 7 C 0.26 8.93 6.74 41.95 0.28 9.21 16 8 C -0.20 -5.65 6.37 23.98 0.15 -5.50 16 9 C -0.09 -2.68 9.82 21.41 0.21 -2.46 16 10 C -0.15 -3.17 10.16 21.14 0.21 -2.96 16 11 C -0.18 -2.76 11.23 66.80 0.75 -2.01 16 12 S 0.19 3.32 22.17 -56.49 -1.25 2.06 16 13 N -0.50 -22.17 9.90 -182.36 -1.80 -23.97 16 14 C 0.30 14.36 8.00 134.14 1.07 15.43 16 15 C -0.21 -8.47 5.98 -21.11 -0.13 -8.60 16 16 C 0.09 3.64 7.21 43.47 0.31 3.95 16 17 C -0.05 -1.62 8.58 71.24 0.61 -1.01 16 18 N -0.26 -12.63 12.44 -46.92 -0.58 -13.21 16 19 N -0.37 -19.31 3.65 -348.76 -1.27 -20.59 16 20 C 0.29 16.61 6.20 85.63 0.53 17.14 16 21 C -0.55 -33.38 9.39 25.60 0.24 -33.14 16 22 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 23 C 0.02 1.33 5.46 84.65 0.46 1.79 16 24 N -0.92 -54.52 13.29 21.44 0.28 -54.23 16 25 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 27 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 28 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 29 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.18 3.74 7.22 -2.91 -0.02 3.72 16 33 H 0.12 4.32 7.96 -2.91 -0.02 4.30 16 34 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 35 H 0.21 1.47 8.06 -2.91 -0.02 1.44 16 36 H 0.10 2.65 7.76 -2.39 -0.02 2.63 16 37 H 0.09 2.31 6.11 -2.39 -0.01 2.30 16 38 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.03 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -76.27 373.64 4.65 -71.62 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 1.09 Total: 8.45 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 6.50 Total: 3.60 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -3.38 Total: -112.01 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.33 Total: -21.03 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -1.25 Total: 2.06 kcal Total: -76.27 4.65 -71.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012396331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.429 kcal (2) G-P(sol) polarization free energy of solvation -76.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds