Wall clock time and date at job start Tue Mar 31 2020 06:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 119.99833 * 2 1 4 4 N 1.46506 * 109.47289 * 124.99944 * 3 2 1 5 5 C 1.36535 * 127.14165 * 90.02459 * 4 3 2 6 6 S 1.76204 * 126.48311 * 359.92774 * 5 4 3 7 7 C 1.81005 * 99.99765 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47069 * 179.97438 * 7 6 5 9 9 C 1.50692 * 109.47257 * 180.02562 * 8 7 6 10 10 H 1.08003 * 120.00422 * 0.02562 * 9 8 7 11 11 C 1.37884 * 120.00362 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99584 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00156 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47714 * 59.99615 * 13 11 9 15 15 H 1.48501 * 109.47075 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47273 * 299.99451 * 13 11 9 17 17 N 1.31279 * 107.03147 * 179.97438 * 5 4 3 18 18 N 1.28527 * 109.85629 * 0.02562 * 17 5 4 19 19 C 1.30298 * 110.07818 * 359.75172 * 18 17 5 20 20 C 1.50696 * 126.34106 * 180.27495 * 19 18 17 21 21 H 1.09001 * 109.64031 * 180.55757 * 20 19 18 22 22 C 1.53873 * 109.65114 * 300.85676 * 20 19 18 23 23 C 1.55045 * 106.62453 * 167.02999 * 22 20 19 24 24 S 1.83289 * 102.56926 * 317.57105 * 23 22 20 25 25 O 1.42098 * 109.34951 * 269.81364 * 24 23 22 26 26 O 1.42096 * 109.35631 * 136.61355 * 24 23 22 27 27 C 1.54170 * 109.64241 * 60.13473 * 20 19 18 28 28 H 1.08001 * 119.99780 * 0.02562 * 1 2 3 29 29 H 1.07994 * 119.99868 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.00222 * 180.02562 * 2 1 3 31 31 H 1.09001 * 109.47438 * 4.99726 * 3 2 1 32 32 H 1.09004 * 109.47113 * 244.99981 * 3 2 1 33 33 H 1.08995 * 109.47246 * 300.00214 * 7 6 5 34 34 H 1.09001 * 109.46794 * 60.00310 * 7 6 5 35 35 H 1.09008 * 109.47304 * 299.99849 * 8 7 6 36 36 H 1.09004 * 109.47478 * 59.99940 * 8 7 6 37 37 H 0.97004 * 120.00245 * 180.02562 * 12 11 9 38 38 H 1.09000 * 110.02910 * 286.32473 * 22 20 19 39 39 H 1.09000 * 110.02607 * 47.73930 * 22 20 19 40 40 H 1.08993 * 110.79127 * 199.29656 * 23 22 20 41 41 H 1.09006 * 110.94924 * 75.91254 * 23 22 20 42 42 H 1.08996 * 110.31967 * 331.13904 * 27 20 19 43 43 H 1.09001 * 110.32096 * 93.33589 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1315 5 6 4.2895 0.9018 1.1437 6 16 5.1731 0.1993 -0.2093 7 6 6.7734 -0.0997 0.5818 8 6 7.7337 -0.7265 -0.4310 9 6 9.0659 -0.9760 0.2278 10 1 9.2128 -0.7142 1.2652 11 6 10.0973 -1.5386 -0.4939 12 7 9.9182 -1.8579 -1.7571 13 14 11.7483 -1.8486 0.3229 14 1 11.5672 -2.7736 1.4704 15 1 12.6809 -2.4557 -0.6605 16 1 12.3100 -0.5623 0.8079 17 7 4.7522 1.1096 2.3546 18 7 3.8365 1.6352 3.0876 19 6 2.7461 1.7977 2.3932 20 6 1.4511 2.3876 2.8892 21 1 0.7156 2.3853 2.0848 22 6 0.9232 1.5564 4.0716 23 6 -0.2032 2.3916 4.7331 24 16 0.5051 4.0821 4.7397 25 8 1.2213 4.2878 5.9496 26 8 -0.4915 5.0119 4.3378 27 6 1.6902 3.8332 3.3687 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5399 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1317 0.0895 32 1 2.6213 1.4027 -0.9314 33 1 7.1852 0.8448 0.9372 34 1 6.6409 -0.7783 1.4245 35 1 7.3217 -1.6712 -0.7859 36 1 7.8662 -0.0483 -1.2740 37 1 10.6437 -2.2541 -2.2648 38 1 0.5231 0.6083 3.7123 39 1 1.7244 1.3762 4.7884 40 1 -0.3935 2.0479 5.7498 41 1 -1.1154 2.3567 4.1374 42 1 2.7131 3.9489 3.7268 43 1 1.4888 4.5379 2.5618 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048355697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:31 Heat of formation + Delta-G solvation = 19.984688 kcal Electronic energy + Delta-G solvation = -26680.223232 eV Core-core repulsion = 22787.859024 eV Total energy + Delta-G solvation = -3892.364208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 357.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.01950 -37.53405 -37.35286 -36.52382 -36.37814 -33.80449 -33.06763 -31.50155 -30.97869 -29.65110 -27.28602 -26.03273 -25.28938 -23.19926 -22.88893 -21.19920 -20.83610 -20.20375 -19.27926 -17.94449 -17.37511 -17.03908 -16.61270 -16.35362 -16.33949 -16.05044 -15.23840 -15.18885 -14.60534 -14.56887 -14.53363 -14.15270 -13.81781 -13.74163 -13.13096 -12.86665 -12.79844 -12.66361 -12.53550 -12.41406 -12.21266 -12.04692 -11.93380 -11.69741 -11.51911 -11.24256 -11.07780 -10.84046 -10.74438 -10.67980 -10.47887 -10.33722 -10.10647 -10.07414 -9.74941 -9.74544 -9.23748 -8.47457 -7.42107 -6.12176 -4.16333 -0.43547 1.22108 1.45496 1.61846 2.05265 2.51999 2.69590 2.72079 3.12116 3.30119 3.33966 3.37801 3.48157 3.68864 3.91126 4.04397 4.08106 4.17355 4.25905 4.27799 4.36760 4.39132 4.71530 4.82174 4.94270 4.98478 5.10362 5.16927 5.24257 5.32163 5.35896 5.42008 5.61769 5.86113 5.93699 6.01429 6.06496 6.13498 6.54279 6.61723 7.41922 7.47970 7.83506 8.19418 8.60105 8.88018 9.48215 10.98701 Molecular weight = 357.10amu Principal moments of inertia in cm(-1) A = 0.016185 B = 0.002206 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.562366 B =12691.712726 C =13951.096306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.177 4.177 3 C 0.131 3.869 4 N -0.461 5.461 5 C 0.179 3.821 6 S -0.032 6.032 7 C -0.073 4.073 8 C 0.036 3.964 9 C -0.519 4.519 10 H 0.061 0.939 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.899 3.101 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.275 1.275 17 N -0.289 5.289 18 N -0.274 5.274 19 C 0.171 3.829 20 C 0.016 3.984 21 H 0.105 0.895 22 C -0.112 4.112 23 C -0.586 4.586 24 S 2.393 3.607 25 O -0.927 6.927 26 O -0.938 6.938 27 C -0.590 4.590 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.123 0.877 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.264 0.736 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.152 0.848 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.353 7.615 5.358 27.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.196 4.196 3 C 0.009 3.991 4 N -0.155 5.155 5 C -0.195 4.195 6 S 0.199 5.801 7 C -0.221 4.221 8 C -0.003 4.003 9 C -0.559 4.559 10 H 0.079 0.921 11 C -0.142 4.142 12 N -0.531 5.531 13 Si 0.727 3.273 14 H -0.200 1.200 15 H -0.212 1.212 16 H -0.200 1.200 17 N -0.133 5.133 18 N -0.113 5.113 19 C -0.099 4.099 20 C -0.006 4.006 21 H 0.123 0.877 22 C -0.152 4.152 23 C -0.716 4.716 24 S 2.576 3.424 25 O -0.924 6.924 26 O -0.935 6.935 27 C -0.720 4.720 28 H 0.119 0.881 29 H 0.126 0.874 30 H 0.141 0.859 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.162 0.838 41 H 0.158 0.842 42 H 0.170 0.830 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -25.844 8.171 5.807 27.720 hybrid contribution 0.626 -0.720 -0.154 0.966 sum -25.218 7.452 5.653 26.897 Atomic orbital electron populations 1.23963 0.95328 1.02687 0.98212 1.23156 0.96335 0.98314 1.01757 1.21069 0.92007 0.97514 0.88556 1.46412 1.10473 1.47537 1.11032 1.27299 0.86064 1.04350 1.01778 1.85715 1.12424 1.73627 1.08377 1.24023 0.89906 1.05253 1.02955 1.18979 0.92132 0.96119 0.93080 1.21008 0.95517 1.41745 0.97654 0.92080 1.25002 0.99060 0.95262 0.94865 1.69947 1.33017 1.42249 1.07893 0.86537 0.83015 0.78703 0.79096 1.20036 1.21194 1.20036 1.74821 1.22145 1.17384 0.98930 1.73890 0.97006 1.14944 1.25497 1.24210 0.98489 1.04659 0.82570 1.19786 0.90856 0.90726 0.99231 0.87655 1.22271 0.96719 0.99695 0.96466 1.30633 1.08479 1.21771 1.10679 1.09007 0.77505 0.78527 0.77410 1.93657 1.72519 1.84565 1.41635 1.93623 1.57278 1.59107 1.83476 1.30728 1.19129 1.02796 1.19341 0.88103 0.87360 0.85911 0.88122 0.87032 0.89585 0.89570 0.95423 0.95421 0.92663 0.87925 0.87774 0.83820 0.84215 0.83034 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 14.32 29.02 0.42 -0.39 16 2 C -0.18 -1.28 9.85 -36.02 -0.35 -1.63 16 3 C 0.13 1.03 6.19 -5.19 -0.03 1.00 16 4 N -0.46 -5.51 2.79 -114.81 -0.32 -5.83 16 5 C 0.18 2.85 8.07 -88.35 -0.71 2.14 16 6 S -0.03 -0.53 21.81 -107.50 -2.34 -2.87 16 7 C -0.07 -1.50 5.17 37.16 0.19 -1.31 16 8 C 0.04 0.90 4.98 -27.89 -0.14 0.76 16 9 C -0.52 -14.19 9.11 -34.44 -0.31 -14.51 16 10 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 13 Si 0.90 21.22 29.54 -169.99 -5.02 16.19 16 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 N -0.29 -5.26 11.60 30.68 0.36 -4.91 16 18 N -0.27 -4.33 11.95 32.99 0.39 -3.93 16 19 C 0.17 2.00 6.50 -154.00 -1.00 1.00 16 20 C 0.02 0.11 2.97 -90.71 -0.27 -0.16 16 21 H 0.11 0.38 6.96 -51.93 -0.36 0.02 16 22 C -0.11 -0.63 5.79 -25.20 -0.15 -0.78 16 23 C -0.59 -2.17 7.31 38.24 0.28 -1.89 16 24 S 2.39 16.26 6.11 -107.50 -0.66 15.61 16 25 O -0.93 -10.29 18.14 -57.71 -1.05 -11.34 16 26 O -0.94 -9.04 18.15 -57.71 -1.05 -10.09 16 27 C -0.59 -3.78 6.74 37.77 0.25 -3.53 16 28 H 0.10 0.30 7.84 -52.49 -0.41 -0.11 16 29 H 0.11 0.46 8.06 -52.49 -0.42 0.04 16 30 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.10 0.48 6.88 -51.93 -0.36 0.12 16 32 H 0.11 0.89 7.86 -51.93 -0.41 0.49 16 33 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 34 H 0.09 1.80 8.14 -51.92 -0.42 1.37 16 35 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.10 0.74 8.06 -51.93 -0.42 0.32 16 40 H 0.14 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.14 0.20 8.14 -51.93 -0.42 -0.22 16 42 H 0.15 1.23 7.74 -51.93 -0.40 0.83 16 43 H 0.14 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 389.78 15.07 5.87 5.87 Total: -1.00 -37.47 389.78 -11.13 -48.60 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -6.13 Total: -4.47 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -1.92 Total: -17.71 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 1.17 Total: -39.80 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -2.09 Total: -21.43 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 15.74 SS G_CDS: -3.00 Total: 12.74 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.47 -11.13 -48.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048355697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.587 kcal (2) G-P(sol) polarization free energy of solvation -37.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds