Wall clock time and date at job start Tue Mar 31 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47166 * 2 1 4 4 C 1.50696 * 109.47403 * 240.00024 * 2 1 3 5 5 C 1.38230 * 120.00309 * 99.99901 * 4 2 1 6 6 C 1.38235 * 120.00326 * 179.97438 * 5 4 2 7 7 C 1.38234 * 119.99814 * 359.97438 * 6 5 4 8 8 C 1.38240 * 120.00061 * 0.07178 * 7 6 5 9 9 C 1.38234 * 120.00081 * 359.88514 * 8 7 6 10 10 N 1.46904 * 109.47235 * 119.99471 * 2 1 3 11 11 C 1.46902 * 111.00126 * 176.04600 * 10 2 1 12 12 C 1.46897 * 111.00171 * 300.00394 * 10 2 1 13 13 C 1.50696 * 109.47339 * 169.99660 * 12 10 2 14 14 O 1.21281 * 119.99963 * 0.02562 * 13 12 10 15 15 N 1.34775 * 120.00092 * 180.02562 * 13 12 10 16 16 C 1.46505 * 119.99898 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.47521 * 89.99620 * 16 15 13 18 18 H 1.08000 * 119.99868 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00248 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99649 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00310 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46814 * 89.99780 * 21 19 17 23 23 H 1.48498 * 109.47292 * 210.00241 * 21 19 17 24 24 H 1.48499 * 109.46986 * 330.00716 * 21 19 17 25 25 C 1.46495 * 120.00068 * 359.97438 * 15 13 12 26 26 C 1.50699 * 109.47013 * 90.00413 * 25 15 13 27 27 C 1.34518 * 125.79149 * 89.71474 * 26 25 15 28 28 C 1.41385 * 106.83934 * 179.89087 * 27 26 25 29 29 C 1.34517 * 106.84292 * 0.37146 * 28 27 26 30 30 O 1.34300 * 108.41792 * 359.77114 * 29 28 27 31 31 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47482 * 300.00148 * 1 2 3 33 33 H 1.08999 * 109.47178 * 60.00470 * 1 2 3 34 34 H 1.08000 * 120.00376 * 359.97438 * 5 4 2 35 35 H 1.08000 * 120.00616 * 179.72578 * 6 5 4 36 36 H 1.08001 * 120.00299 * 179.97438 * 7 6 5 37 37 H 1.08005 * 120.00107 * 179.97438 * 8 7 6 38 38 H 1.07999 * 120.00147 * 180.10835 * 9 8 7 39 39 H 1.08998 * 109.46702 * 60.00676 * 11 10 2 40 40 H 1.09000 * 109.47088 * 180.02562 * 11 10 2 41 41 H 1.08994 * 109.47227 * 300.00613 * 11 10 2 42 42 H 1.08998 * 109.47132 * 289.99937 * 12 10 2 43 43 H 1.09007 * 109.47053 * 49.99714 * 12 10 2 44 44 H 1.09003 * 109.46892 * 210.00210 * 16 15 13 45 45 H 1.09009 * 109.46803 * 329.99373 * 16 15 13 46 46 H 0.97001 * 119.99505 * 180.02562 * 20 19 17 47 47 H 1.09001 * 109.47045 * 209.99941 * 25 15 13 48 48 H 1.09000 * 109.47496 * 330.00439 * 25 15 13 49 49 H 1.07994 * 126.57580 * 0.02667 * 27 26 25 50 50 H 1.08001 * 126.57865 * 180.16764 * 28 27 26 51 51 H 1.07990 * 125.78883 * 179.75568 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 2.4588 0.0194 -2.3242 6 6 2.9201 -0.6322 -3.4527 7 6 2.9555 -2.0137 -3.4871 8 6 2.5282 -2.7436 -2.3936 9 6 2.0677 -2.0919 -1.2648 10 7 2.0197 -0.6924 1.1995 11 6 3.4851 -0.7944 1.1871 12 6 1.5486 -0.0263 2.4211 13 6 1.8579 -0.8909 3.6160 14 8 2.4162 -1.9569 3.4648 15 7 1.5140 -0.4796 4.8525 16 6 1.8152 -1.3200 6.0141 17 6 3.1789 -0.9670 6.5496 18 1 3.7631 -0.1942 6.0722 19 6 3.6808 -1.6305 7.6491 20 7 2.9696 -2.5719 8.2302 21 14 5.3714 -1.1934 8.3124 22 1 5.2414 -0.1197 9.3300 23 1 5.9845 -2.3941 8.9351 24 1 6.2323 -0.7187 7.1994 25 6 0.8402 0.8082 5.0351 26 6 -0.6518 0.6096 4.9602 27 6 -1.4615 0.3312 5.9977 28 6 -2.7727 0.2310 5.4785 29 6 -2.6848 0.4458 4.1535 30 8 -1.3978 0.6746 3.8452 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.4315 1.0987 -2.2972 35 1 3.2491 -0.0622 -4.3089 36 1 3.3156 -2.5229 -4.3689 37 1 2.5555 -3.8229 -2.4207 38 1 1.7355 -2.6621 -0.4099 39 1 3.9186 0.2052 1.1593 40 1 3.8209 -1.3115 2.0860 41 1 3.8030 -1.3530 0.3068 42 1 2.0518 0.9347 2.5280 43 1 0.4721 0.1325 2.3564 44 1 1.0662 -1.1520 6.7881 45 1 1.8018 -2.3688 5.7171 46 1 3.3226 -3.0384 9.0039 47 1 1.1032 1.2211 6.0090 48 1 1.1547 1.4973 4.2514 49 1 -1.1668 0.2101 7.0295 50 1 -3.6720 0.0189 6.0378 51 1 -3.5092 0.4358 3.4560 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049581338.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:10 Heat of formation + Delta-G solvation = 26.589963 kcal Electronic energy + Delta-G solvation = -32321.766168 eV Core-core repulsion = 28188.583664 eV Total energy + Delta-G solvation = -4133.182504 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 356.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.33474 -39.95263 -38.99200 -36.89784 -35.13814 -32.85805 -32.69844 -32.18875 -30.90925 -30.14171 -29.66459 -28.55939 -26.75294 -25.35528 -24.58909 -23.35282 -22.65202 -22.00278 -21.49639 -20.50320 -19.99611 -18.53863 -17.38236 -17.03101 -16.50308 -16.30727 -16.11587 -15.57492 -15.45454 -15.07669 -14.85180 -14.54679 -14.37981 -14.27456 -13.86745 -13.57979 -13.39027 -13.34812 -12.77763 -12.70791 -12.62949 -12.54228 -12.43518 -12.26852 -12.14989 -11.94909 -11.57464 -11.54118 -11.37435 -11.23851 -11.21013 -10.98652 -10.85860 -10.67251 -10.58729 -10.18280 -9.73120 -9.66143 -8.96644 -8.90540 -8.71456 -8.45706 -8.31311 -8.11021 -7.78145 -6.06192 -4.11293 1.29508 1.38952 1.89253 2.81960 3.12511 3.28561 3.35823 3.38722 3.47921 3.61228 3.81647 4.24003 4.43849 4.59952 4.85743 4.90457 4.94880 5.04207 5.10055 5.16874 5.19958 5.24226 5.25074 5.28861 5.37571 5.44910 5.49817 5.55822 5.59409 5.65159 5.78178 5.85406 5.86343 5.88111 5.97280 6.00482 6.05989 6.17942 6.19054 6.29272 6.40299 6.43553 6.51073 6.61254 6.71038 6.92794 6.98430 7.15950 7.24489 7.31303 7.44896 7.50753 7.90095 8.20398 8.33331 8.88438 9.08036 9.54072 11.01875 Molecular weight = 356.19amu Principal moments of inertia in cm(-1) A = 0.008538 B = 0.003288 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.625919 B = 8514.219662 C =11082.823202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.120 3.880 3 H 0.046 0.954 4 C -0.074 4.074 5 C -0.118 4.118 6 C -0.126 4.126 7 C -0.125 4.125 8 C -0.125 4.125 9 C -0.088 4.088 10 N -0.514 5.514 11 C 0.018 3.982 12 C 0.029 3.971 13 C 0.512 3.488 14 O -0.515 6.515 15 N -0.596 5.596 16 C 0.249 3.751 17 C -0.528 4.528 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.893 5.893 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.191 3.809 26 C -0.027 4.027 27 C -0.193 4.193 28 C -0.213 4.213 29 C -0.049 4.049 30 O -0.178 6.178 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.135 0.865 39 H 0.016 0.984 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.107 0.893 44 H 0.033 0.967 45 H 0.044 0.956 46 H 0.263 0.737 47 H 0.116 0.884 48 H 0.081 0.919 49 H 0.150 0.850 50 H 0.144 0.856 51 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.153 8.635 -17.761 21.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.011 3.989 3 H 0.064 0.936 4 C -0.074 4.074 5 C -0.137 4.137 6 C -0.144 4.144 7 C -0.143 4.143 8 C -0.143 4.143 9 C -0.107 4.107 10 N -0.238 5.238 11 C -0.130 4.130 12 C -0.102 4.102 13 C 0.298 3.702 14 O -0.390 6.390 15 N -0.329 5.329 16 C 0.130 3.870 17 C -0.567 4.567 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.532 5.532 21 Si 0.725 3.275 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.199 1.199 25 C 0.066 3.934 26 C -0.078 4.078 27 C -0.213 4.213 28 C -0.232 4.232 29 C -0.117 4.117 30 O -0.074 6.074 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.153 0.847 39 H 0.034 0.966 40 H 0.113 0.887 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.124 0.876 44 H 0.051 0.949 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.134 0.866 48 H 0.099 0.901 49 H 0.167 0.833 50 H 0.162 0.838 51 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -7.889 7.480 -17.960 20.994 hybrid contribution 0.953 0.981 0.714 1.543 sum -6.935 8.461 -17.246 20.423 Atomic orbital electron populations 1.21905 0.93356 1.03114 1.01726 1.20567 0.95770 0.94609 0.87909 0.93606 1.19741 0.98899 0.94139 0.94620 1.20987 0.99679 0.99530 0.93468 1.21034 1.00708 0.94625 0.98022 1.21130 1.00429 0.94212 0.98537 1.21220 0.99494 0.99958 0.93616 1.21197 0.97498 0.94054 0.97910 1.61668 1.11590 1.50827 0.99701 1.22601 0.86066 0.99635 1.04688 1.22206 1.02556 0.95540 0.89905 1.20169 0.79368 0.87028 0.83611 1.90643 1.40662 1.22881 1.84783 1.48321 1.56657 1.19763 1.08142 1.19295 0.95807 0.90969 0.80925 1.21416 1.02023 1.20545 1.12674 0.92425 1.24922 0.97655 0.94804 0.96594 1.69938 1.37669 1.23710 1.21841 0.86515 0.84169 0.77878 0.78967 1.20654 1.21103 1.19900 1.19873 0.81547 0.87369 1.04597 1.23310 0.94907 1.05674 0.83909 1.21699 0.92528 1.06428 1.00610 1.21826 0.98592 1.07996 0.94811 1.23913 0.84449 1.06397 0.96973 1.83976 1.18125 1.69959 1.35374 0.91442 0.91777 0.92210 0.86483 0.86422 0.86494 0.86180 0.84743 0.96582 0.88740 0.91421 0.92669 0.87560 0.94937 0.93757 0.92698 0.86621 0.90093 0.83260 0.83804 0.78589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.97 37.16 0.33 -1.24 16 2 C 0.12 1.46 2.28 -68.87 -0.16 1.30 16 3 H 0.05 0.53 8.00 -51.93 -0.42 0.11 16 4 C -0.07 -0.88 3.78 -104.63 -0.40 -1.28 16 5 C -0.12 -1.25 9.67 -39.59 -0.38 -1.63 16 6 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 7 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 8 C -0.12 -1.38 10.05 -39.58 -0.40 -1.78 16 9 C -0.09 -1.11 8.06 -39.58 -0.32 -1.43 16 10 N -0.51 -7.80 3.71 -237.74 -0.88 -8.68 16 11 C 0.02 0.28 8.77 60.07 0.53 0.81 16 12 C 0.03 0.45 3.82 -4.98 -0.02 0.43 16 13 C 0.51 10.57 7.36 -10.99 -0.08 10.49 16 14 O -0.51 -12.74 13.91 5.56 0.08 -12.66 16 15 N -0.60 -12.28 2.44 -176.43 -0.43 -12.71 16 16 C 0.25 6.34 5.16 -5.19 -0.03 6.31 16 17 C -0.53 -14.49 9.39 -34.44 -0.32 -14.82 16 18 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 21 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.19 3.04 5.74 -5.20 -0.03 3.01 16 26 C -0.03 -0.41 6.85 -35.62 -0.24 -0.65 16 27 C -0.19 -2.94 10.81 -39.70 -0.43 -3.37 16 28 C -0.21 -2.77 10.91 -39.70 -0.43 -3.21 16 29 C -0.05 -0.59 12.09 29.42 0.36 -0.24 16 30 O -0.18 -2.51 9.54 5.70 0.05 -2.46 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.69 6.20 -51.93 -0.32 0.37 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.12 1.04 8.04 -52.49 -0.42 0.61 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 38 H 0.13 1.88 7.72 -52.49 -0.40 1.48 16 39 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.09 1.82 5.82 -51.93 -0.30 1.52 16 41 H 0.07 1.02 6.11 -51.93 -0.32 0.70 16 42 H 0.06 0.78 7.38 -51.93 -0.38 0.40 16 43 H 0.11 1.54 4.60 -51.93 -0.24 1.30 16 44 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 45 H 0.04 1.30 7.42 -51.92 -0.39 0.92 16 46 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.12 1.79 8.07 -51.93 -0.42 1.37 16 48 H 0.08 1.07 6.44 -51.93 -0.33 0.73 16 49 H 0.15 2.28 8.06 -52.49 -0.42 1.85 16 50 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 51 H 0.20 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 415.76 15.07 6.27 6.27 Total: -1.00 -32.82 415.76 -9.83 -42.65 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.71 Total: 5.43 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -2.91 Total: -8.90 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.58 Total: -46.80 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.13 Total: -15.12 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.82 -9.83 -42.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049581338.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.243 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds