Wall clock time and date at job start Tue Mar 31 2020 06:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47166 * 2 1 4 4 C 1.50696 * 109.47403 * 240.00024 * 2 1 3 5 5 C 1.38230 * 120.00309 * 99.99901 * 4 2 1 6 6 C 1.38235 * 120.00326 * 179.97438 * 5 4 2 7 7 C 1.38234 * 119.99814 * 359.97438 * 6 5 4 8 8 C 1.38240 * 120.00061 * 0.07178 * 7 6 5 9 9 C 1.38234 * 120.00081 * 359.88514 * 8 7 6 10 10 N 1.46904 * 109.47235 * 119.99471 * 2 1 3 11 11 C 1.46902 * 111.00126 * 176.04600 * 10 2 1 12 12 C 1.46897 * 111.00171 * 300.00394 * 10 2 1 13 13 C 1.50696 * 109.47339 * 169.99660 * 12 10 2 14 14 O 1.21281 * 119.99963 * 0.02562 * 13 12 10 15 15 N 1.34775 * 120.00092 * 180.02562 * 13 12 10 16 16 C 1.46505 * 119.99898 * 180.02562 * 15 13 12 17 17 C 1.50699 * 109.47521 * 89.99620 * 16 15 13 18 18 H 1.08000 * 119.99868 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00248 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99649 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00310 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46814 * 89.99780 * 21 19 17 23 23 H 1.48498 * 109.47292 * 210.00241 * 21 19 17 24 24 H 1.48499 * 109.46986 * 330.00716 * 21 19 17 25 25 C 1.46495 * 120.00068 * 359.97438 * 15 13 12 26 26 C 1.50699 * 109.47013 * 90.00413 * 25 15 13 27 27 C 1.34518 * 125.79149 * 89.71474 * 26 25 15 28 28 C 1.41385 * 106.83934 * 179.89087 * 27 26 25 29 29 C 1.34517 * 106.84292 * 0.37146 * 28 27 26 30 30 O 1.34300 * 108.41792 * 359.77114 * 29 28 27 31 31 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47482 * 300.00148 * 1 2 3 33 33 H 1.08999 * 109.47178 * 60.00470 * 1 2 3 34 34 H 1.08000 * 120.00376 * 359.97438 * 5 4 2 35 35 H 1.08000 * 120.00616 * 179.72578 * 6 5 4 36 36 H 1.08001 * 120.00299 * 179.97438 * 7 6 5 37 37 H 1.08005 * 120.00107 * 179.97438 * 8 7 6 38 38 H 1.07999 * 120.00147 * 180.10835 * 9 8 7 39 39 H 1.08998 * 109.46702 * 60.00676 * 11 10 2 40 40 H 1.09000 * 109.47088 * 180.02562 * 11 10 2 41 41 H 1.08994 * 109.47227 * 300.00613 * 11 10 2 42 42 H 1.08998 * 109.47132 * 289.99937 * 12 10 2 43 43 H 1.09007 * 109.47053 * 49.99714 * 12 10 2 44 44 H 1.09003 * 109.46892 * 210.00210 * 16 15 13 45 45 H 1.09009 * 109.46803 * 329.99373 * 16 15 13 46 46 H 0.97001 * 119.99505 * 180.02562 * 20 19 17 47 47 H 1.09001 * 109.47045 * 209.99941 * 25 15 13 48 48 H 1.09000 * 109.47496 * 330.00439 * 25 15 13 49 49 H 1.07994 * 126.57580 * 0.02667 * 27 26 25 50 50 H 1.08001 * 126.57865 * 180.16764 * 28 27 26 51 51 H 1.07990 * 125.78883 * 179.75568 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 2.4588 0.0194 -2.3242 6 6 2.9201 -0.6322 -3.4527 7 6 2.9555 -2.0137 -3.4871 8 6 2.5282 -2.7436 -2.3936 9 6 2.0677 -2.0919 -1.2648 10 7 2.0197 -0.6924 1.1995 11 6 3.4851 -0.7944 1.1871 12 6 1.5486 -0.0263 2.4211 13 6 1.8579 -0.8909 3.6160 14 8 2.4162 -1.9569 3.4648 15 7 1.5140 -0.4796 4.8525 16 6 1.8152 -1.3200 6.0141 17 6 3.1789 -0.9670 6.5496 18 1 3.7631 -0.1942 6.0722 19 6 3.6808 -1.6305 7.6491 20 7 2.9696 -2.5719 8.2302 21 14 5.3714 -1.1934 8.3124 22 1 5.2414 -0.1197 9.3300 23 1 5.9845 -2.3941 8.9351 24 1 6.2323 -0.7187 7.1994 25 6 0.8402 0.8082 5.0351 26 6 -0.6518 0.6096 4.9602 27 6 -1.4615 0.3312 5.9977 28 6 -2.7727 0.2310 5.4785 29 6 -2.6848 0.4458 4.1535 30 8 -1.3978 0.6746 3.8452 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.4315 1.0987 -2.2972 35 1 3.2491 -0.0622 -4.3089 36 1 3.3156 -2.5229 -4.3689 37 1 2.5555 -3.8229 -2.4207 38 1 1.7355 -2.6621 -0.4099 39 1 3.9186 0.2052 1.1593 40 1 3.8209 -1.3115 2.0860 41 1 3.8030 -1.3530 0.3068 42 1 2.0518 0.9347 2.5280 43 1 0.4721 0.1325 2.3564 44 1 1.0662 -1.1520 6.7881 45 1 1.8018 -2.3688 5.7171 46 1 3.3226 -3.0384 9.0039 47 1 1.1032 1.2211 6.0090 48 1 1.1547 1.4973 4.2514 49 1 -1.1668 0.2101 7.0295 50 1 -3.6720 0.0189 6.0378 51 1 -3.5092 0.4358 3.4560 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049581338.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:09 Heat of formation + Delta-G solvation = 8.198206 kcal Electronic energy + Delta-G solvation = -32322.563694 eV Core-core repulsion = 28188.583664 eV Total energy + Delta-G solvation = -4133.980030 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 356.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.42095 -41.13525 -40.26085 -38.04355 -36.78738 -34.86655 -33.83662 -33.24130 -31.72814 -31.52911 -30.66969 -30.03005 -28.31896 -26.74362 -25.79524 -24.83946 -23.66565 -23.17030 -22.59735 -21.66030 -20.97168 -20.01950 -18.82722 -18.43404 -17.92605 -17.59676 -17.36728 -16.90483 -16.63634 -16.36965 -16.15306 -15.93668 -15.60894 -15.40606 -15.02966 -14.87512 -14.52173 -14.30827 -14.15053 -14.04934 -13.82011 -13.72817 -13.62560 -13.54366 -13.28384 -13.21369 -13.13091 -12.92444 -12.68901 -12.55158 -12.46953 -12.43923 -12.35898 -12.20483 -11.82097 -11.72138 -11.56325 -10.80510 -10.63207 -10.56845 -9.75165 -9.64483 -9.55377 -9.35131 -9.27779 -8.21636 -6.36000 0.47934 0.56894 0.77834 1.37185 1.40248 1.50182 1.69853 1.78368 2.14835 2.27424 2.41472 2.88619 3.03565 3.08836 3.64534 3.70540 3.83710 4.03450 4.04871 4.17855 4.21171 4.22841 4.26236 4.29348 4.33313 4.38104 4.40920 4.54574 4.58979 4.61883 4.69544 4.76105 4.86226 4.94285 4.96798 5.00609 5.07267 5.10978 5.17294 5.23210 5.23646 5.24912 5.31929 5.53229 5.60248 5.64475 5.68901 5.71091 5.80194 5.94097 6.06244 6.15081 6.20292 6.24855 6.67699 6.74921 7.29396 7.47403 8.85933 Molecular weight = 356.19amu Principal moments of inertia in cm(-1) A = 0.008538 B = 0.003288 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.625919 B = 8514.219662 C =11082.823202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.122 3.878 3 H 0.063 0.937 4 C -0.085 4.085 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.127 4.127 8 C -0.136 4.136 9 C -0.109 4.109 10 N -0.530 5.530 11 C 0.029 3.971 12 C 0.046 3.954 13 C 0.502 3.498 14 O -0.568 6.568 15 N -0.600 5.600 16 C 0.269 3.731 17 C -0.539 4.539 18 H 0.057 0.943 19 C 0.009 3.991 20 N -0.929 5.929 21 Si 0.966 3.034 22 H -0.263 1.263 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.190 3.810 26 C -0.045 4.045 27 C -0.210 4.210 28 C -0.231 4.231 29 C -0.032 4.032 30 O -0.180 6.180 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.139 0.861 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.127 0.873 38 H 0.107 0.893 39 H 0.031 0.969 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.123 0.877 44 H 0.022 0.978 45 H -0.007 1.007 46 H 0.266 0.734 47 H 0.115 0.885 48 H 0.115 0.885 49 H 0.138 0.862 50 H 0.165 0.835 51 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.576 11.474 -20.213 24.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.014 3.986 3 H 0.081 0.919 4 C -0.085 4.085 5 C -0.139 4.139 6 C -0.143 4.143 7 C -0.145 4.145 8 C -0.154 4.154 9 C -0.128 4.128 10 N -0.255 5.255 11 C -0.119 4.119 12 C -0.084 4.084 13 C 0.291 3.709 14 O -0.446 6.446 15 N -0.332 5.332 16 C 0.148 3.852 17 C -0.578 4.578 18 H 0.076 0.924 19 C -0.190 4.190 20 N -0.568 5.568 21 Si 0.791 3.209 22 H -0.187 1.187 23 H -0.210 1.210 24 H -0.197 1.197 25 C 0.067 3.933 26 C -0.096 4.096 27 C -0.231 4.231 28 C -0.250 4.250 29 C -0.099 4.099 30 O -0.077 6.077 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.158 0.842 37 H 0.145 0.855 38 H 0.126 0.874 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.141 0.859 44 H 0.040 0.960 45 H 0.011 0.989 46 H 0.075 0.925 47 H 0.133 0.867 48 H 0.133 0.867 49 H 0.156 0.844 50 H 0.183 0.817 51 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -8.342 10.370 -20.423 24.377 hybrid contribution 0.981 0.048 1.408 1.717 sum -7.360 10.418 -19.015 22.897 Atomic orbital electron populations 1.21880 0.92368 1.02420 1.02931 1.20659 0.96513 0.94972 0.86428 0.91917 1.19780 0.99730 0.93806 0.95194 1.21243 0.98985 1.00605 0.93025 1.21410 0.99563 0.94711 0.98587 1.21441 0.99635 0.94683 0.98720 1.21389 0.99663 1.00628 0.93739 1.21083 0.99200 0.94664 0.97830 1.61583 1.11083 1.52218 1.00644 1.22368 0.86894 0.99893 1.02698 1.22069 1.03690 0.94915 0.87775 1.21148 0.78108 0.86966 0.84695 1.90619 1.42972 1.25413 1.85646 1.48268 1.57051 1.20879 1.06980 1.18675 0.95091 0.89207 0.82233 1.21690 1.02795 1.20500 1.12819 0.92450 1.25837 1.01691 0.94570 0.96909 1.70068 1.39607 1.24772 1.22385 0.85432 0.79023 0.77969 0.78491 1.18747 1.20958 1.19673 1.20037 0.81952 0.85393 1.05910 1.22996 0.94617 1.07456 0.84491 1.21888 0.94233 1.06545 1.00390 1.22126 0.98312 1.08832 0.95715 1.24807 0.84318 1.03324 0.97433 1.83962 1.19008 1.70000 1.34688 0.93098 0.91401 0.90037 0.84364 0.83685 0.84183 0.85518 0.87436 0.95076 0.92827 0.91139 0.90255 0.85891 0.95983 0.98907 0.92497 0.86737 0.86705 0.84427 0.81719 0.74105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.97 71.98 0.65 -2.08 16 2 C 0.12 2.74 2.28 44.17 0.10 2.84 16 3 H 0.06 1.23 8.00 -2.39 -0.02 1.21 16 4 C -0.08 -1.91 3.78 -19.87 -0.08 -1.99 16 5 C -0.12 -2.19 9.67 22.27 0.22 -1.97 16 6 C -0.12 -2.04 10.05 22.27 0.22 -1.82 16 7 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 8 C -0.14 -2.95 10.05 22.27 0.22 -2.73 16 9 C -0.11 -2.79 8.06 22.27 0.18 -2.61 16 10 N -0.53 -16.00 3.71 -906.06 -3.36 -19.36 16 11 C 0.03 0.95 8.77 127.69 1.12 2.07 16 12 C 0.05 1.40 3.82 85.56 0.33 1.73 16 13 C 0.50 21.48 7.36 87.66 0.65 22.12 16 14 O -0.57 -30.04 13.91 -3.03 -0.04 -30.08 16 15 N -0.60 -25.65 2.44 -830.50 -2.03 -27.67 16 16 C 0.27 14.56 5.16 85.63 0.44 15.00 16 17 C -0.54 -30.76 9.39 25.60 0.24 -30.52 16 18 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 19 C 0.01 0.51 5.46 84.65 0.46 0.97 16 20 N -0.93 -56.41 13.29 21.45 0.28 -56.13 16 21 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 25 C 0.19 6.02 5.74 85.63 0.49 6.52 16 26 C -0.04 -1.35 6.85 24.83 0.17 -1.18 16 27 C -0.21 -6.48 10.81 22.19 0.24 -6.24 16 28 C -0.23 -5.67 10.91 22.19 0.24 -5.42 16 29 C -0.03 -0.66 12.09 66.97 0.81 0.15 16 30 O -0.18 -4.70 9.54 -2.50 -0.02 -4.73 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.27 6.20 -2.39 -0.01 1.25 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.14 1.88 8.04 -2.91 -0.02 1.86 16 35 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 36 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 37 H 0.13 2.43 8.06 -2.91 -0.02 2.40 16 38 H 0.11 3.26 7.72 -2.91 -0.02 3.23 16 39 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.05 2.18 5.82 -2.39 -0.01 2.17 16 41 H 0.07 2.18 6.11 -2.39 -0.01 2.17 16 42 H 0.08 2.05 7.38 -2.39 -0.02 2.04 16 43 H 0.12 3.35 4.60 -2.38 -0.01 3.34 16 44 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 45 H -0.01 -0.46 7.42 -2.38 -0.02 -0.48 16 46 H 0.27 15.20 8.31 -92.71 -0.77 14.42 16 47 H 0.11 3.61 8.07 -2.39 -0.02 3.59 16 48 H 0.11 2.81 6.44 -2.39 -0.02 2.79 16 49 H 0.14 4.44 8.06 -2.91 -0.02 4.41 16 50 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 51 H 0.24 2.64 8.06 -2.92 -0.02 2.61 16 Total: -1.00 -76.61 415.76 4.71 -71.90 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 0.92 Total: 26.41 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 6.93 Total: -7.17 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -5.10 Total: -103.16 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -0.07 Total: -34.81 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -76.61 4.71 -71.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049581338.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.103 kcal (2) G-P(sol) polarization free energy of solvation -76.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds