Wall clock time and date at job start Tue Mar 31 2020 06:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31352 * 119.84600 * 2 1 4 4 C 1.33816 * 120.86778 * 180.23789 * 3 2 1 5 5 N 1.32823 * 132.49951 * 179.73724 * 4 3 2 6 6 C 1.32618 * 109.75830 * 180.02562 * 5 4 3 7 7 N 1.31190 * 109.62728 * 0.02562 * 6 5 4 8 8 N 1.36666 * 120.28729 * 359.77204 * 4 3 2 9 9 C 1.35977 * 120.27155 * 359.97199 * 8 4 3 10 10 C 1.50694 * 120.49006 * 180.02562 * 9 8 4 11 11 C 1.35779 * 119.02136 * 0.02562 * 9 8 4 12 12 C 1.50703 * 120.37894 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.46912 * 90.00346 * 12 11 9 14 14 C 1.50703 * 109.46912 * 179.97438 * 13 12 11 15 15 O 1.21278 * 119.99985 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00161 * 179.97438 * 14 13 12 17 17 C 1.46496 * 120.00271 * 179.97438 * 16 14 13 18 18 C 1.50705 * 109.47066 * 90.00086 * 17 16 14 19 19 H 1.08001 * 119.99987 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00127 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00059 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00144 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47052 * 60.00305 * 22 20 18 24 24 H 1.48498 * 109.47378 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47029 * 300.00164 * 22 20 18 26 26 C 1.46505 * 119.99832 * 0.02562 * 16 14 13 27 27 C 1.53001 * 109.47201 * 89.99461 * 26 16 14 28 28 C 1.47198 * 109.47154 * 179.97438 * 27 26 16 29 29 N 7.08855 * 77.97750 * 107.98960 * 2 1 3 30 30 H 1.08999 * 109.47405 * 270.25151 * 1 2 3 31 31 H 1.09003 * 109.47245 * 30.25329 * 1 2 3 32 32 H 1.09003 * 109.47105 * 150.25132 * 1 2 3 33 33 H 1.07996 * 125.19273 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.47453 * 269.98273 * 10 9 8 35 35 H 1.09001 * 109.47020 * 29.97891 * 10 9 8 36 36 H 1.09004 * 109.47572 * 149.98009 * 10 9 8 37 37 H 1.09002 * 109.47152 * 330.00118 * 12 11 9 38 38 H 1.09001 * 109.46980 * 210.00218 * 12 11 9 39 39 H 1.09001 * 109.47194 * 299.99742 * 13 12 11 40 40 H 1.08992 * 109.47399 * 59.99914 * 13 12 11 41 41 H 1.08998 * 109.47205 * 209.99950 * 17 16 14 42 42 H 1.08997 * 109.47416 * 330.00811 * 17 16 14 43 43 H 0.97001 * 120.00292 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.47101 * 209.99896 * 26 16 14 45 45 H 1.09003 * 109.46885 * 329.99503 * 26 16 14 46 46 H 1.08996 * 109.47448 * 300.00222 * 27 26 16 47 47 H 1.09001 * 109.46659 * 60.00103 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1393 0.0000 4 6 3.4986 1.1632 -0.0048 5 7 4.3783 2.1583 -0.0104 6 6 5.6103 1.6675 -0.0140 7 7 5.5625 0.3565 -0.0115 8 7 4.2088 -0.0045 -0.0050 9 6 3.5617 -1.2004 0.0001 10 6 4.3399 -2.4908 0.0004 11 6 2.2040 -1.2146 0.0050 12 6 1.4556 -2.5227 0.0102 13 6 1.2074 -2.9625 1.4544 14 6 0.4584 -4.2702 1.4596 15 8 0.1536 -4.7986 0.4114 16 7 0.1282 -4.8531 2.6291 17 6 -0.6004 -6.1240 2.6342 18 6 0.3825 -7.2664 2.6318 19 1 1.4437 -7.0658 2.6275 20 6 -0.0730 -8.5677 2.6363 21 7 -1.3652 -8.8121 2.6422 22 14 1.1453 -9.9838 2.6342 23 1 2.0037 -9.9001 3.8430 24 1 0.4069 -11.2722 2.6404 25 1 1.9937 -9.9049 1.4181 26 6 0.4969 -4.2150 3.8953 27 6 -0.6268 -3.2764 4.3396 28 6 -0.2566 -2.6358 5.6121 29 7 0.0304 -2.1412 6.5941 30 1 -0.3634 0.0045 1.0276 31 1 -0.3634 0.8877 -0.5178 32 1 -0.3633 -0.8923 -0.5099 33 1 6.5151 2.2571 -0.0192 34 1 4.5236 -2.8046 -1.0272 35 1 5.2916 -2.3411 0.5102 36 1 3.7674 -3.2603 0.5184 37 1 2.0458 -3.2811 -0.5043 38 1 0.5008 -2.3970 -0.5006 39 1 2.1621 -3.0881 1.9651 40 1 0.6172 -2.2042 1.9688 41 1 -1.2230 -6.1823 3.5269 42 1 -1.2305 -6.1852 1.7469 43 1 -1.6857 -9.7276 2.6457 44 1 0.6532 -4.9801 4.6557 45 1 1.4154 -3.6439 3.7604 46 1 -0.7831 -2.5113 3.5792 47 1 -1.5453 -3.8476 4.4744 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058282923.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:19 Heat of formation + Delta-G solvation = 117.392606 kcal Electronic energy + Delta-G solvation = -31291.595687 eV Core-core repulsion = 27091.103089 eV Total energy + Delta-G solvation = -4200.492598 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.170 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.21323 -40.02008 -39.20677 -36.96086 -35.92205 -35.39437 -34.50390 -32.97049 -31.89983 -30.96087 -30.74125 -29.36061 -28.38888 -27.35340 -25.29454 -24.11046 -23.21203 -22.84287 -21.86456 -21.53292 -19.01217 -18.64492 -17.86652 -17.67503 -16.96899 -16.63234 -16.54368 -15.74116 -15.46530 -15.31110 -14.80903 -14.68001 -14.48467 -14.16882 -14.04077 -14.01075 -13.93445 -13.44509 -13.22850 -13.02137 -12.87679 -12.68833 -12.57519 -12.52133 -12.46460 -12.24029 -12.10326 -11.96863 -11.80699 -11.66747 -11.35855 -11.23771 -11.06968 -10.88086 -10.68325 -10.43201 -10.27569 -10.20793 -9.81878 -9.74191 -9.19660 -8.84837 -8.54614 -7.97058 -6.16598 -4.21715 0.10831 0.41159 1.58374 2.25964 2.65442 2.74500 2.97512 3.08258 3.14005 3.24247 3.29793 3.31935 3.51329 3.63248 3.79843 4.04592 4.26944 4.34853 4.37920 4.60650 4.70911 4.84685 4.88104 4.90139 4.95759 5.04384 5.06436 5.10386 5.18342 5.20171 5.25205 5.31671 5.40102 5.47047 5.55357 5.67794 5.73838 5.76330 5.85660 5.96463 5.98398 5.99096 6.08243 6.82298 7.17948 7.25250 7.31870 7.50901 7.64739 7.78624 8.08213 8.13405 8.71418 8.86368 9.44225 10.91462 Molecular weight = 356.17amu Principal moments of inertia in cm(-1) A = 0.010679 B = 0.002704 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.387407 B =10351.791170 C =11421.001842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.245 3.755 3 N -0.465 5.465 4 C 0.447 3.553 5 N -0.534 5.534 6 C 0.249 3.751 7 N -0.341 5.341 8 N -0.324 5.324 9 C 0.205 3.795 10 C -0.127 4.127 11 C -0.182 4.182 12 C -0.053 4.053 13 C -0.144 4.144 14 C 0.508 3.492 15 O -0.531 6.531 16 N -0.595 5.595 17 C 0.245 3.755 18 C -0.531 4.531 19 H 0.057 0.943 20 C 0.064 3.936 21 N -0.893 5.893 22 Si 0.896 3.104 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 C 0.116 3.884 27 C -0.050 4.050 28 C 0.214 3.786 29 N -0.443 5.443 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.231 0.769 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.035 0.965 42 H 0.048 0.952 43 H 0.265 0.735 44 H 0.094 0.906 45 H 0.075 0.925 46 H 0.106 0.894 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.763 15.584 -4.601 17.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.080 3.920 3 N -0.182 5.182 4 C 0.087 3.913 5 N -0.267 5.267 6 C -0.052 4.052 7 N -0.172 5.172 8 N -0.104 5.104 9 C 0.086 3.914 10 C -0.183 4.183 11 C -0.189 4.189 12 C -0.092 4.092 13 C -0.184 4.184 14 C 0.294 3.706 15 O -0.408 6.408 16 N -0.327 5.327 17 C 0.126 3.874 18 C -0.570 4.570 19 H 0.075 0.925 20 C -0.139 4.139 21 N -0.531 5.531 22 Si 0.724 3.276 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.010 4.010 27 C -0.092 4.092 28 C -0.104 4.104 29 N -0.121 5.121 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.247 0.753 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.113 0.887 45 H 0.093 0.907 46 H 0.124 0.876 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.294 16.791 -3.693 18.309 hybrid contribution 0.981 -1.658 -0.179 1.935 sum 7.275 15.134 -3.872 17.232 Atomic orbital electron populations 1.21043 0.86056 1.05382 1.04884 1.21986 0.98135 0.86178 0.85654 1.67862 1.01891 1.28687 1.19743 1.22798 0.90226 0.81956 0.96334 1.70857 0.98652 1.27059 1.30105 1.26268 0.96371 0.89375 0.93232 1.78495 0.89992 1.15425 1.33301 1.48733 1.07695 1.07642 1.46302 1.20690 0.91517 0.86530 0.92620 1.21149 1.00848 0.91126 1.05220 1.20354 0.91080 0.98626 1.08833 1.20319 1.01223 0.90616 0.97060 1.21814 1.02011 0.96932 0.97689 1.20200 0.80328 0.85798 0.84239 1.90711 1.54222 1.64949 1.30876 1.48227 1.56763 1.24171 1.03510 1.19359 0.91806 0.77505 0.98728 1.21353 0.93242 0.90683 1.51690 0.92451 1.24904 0.95243 0.98806 0.94924 1.69898 1.12559 1.20717 1.49961 0.86593 0.81077 0.81323 0.78644 1.20265 1.21186 1.20153 1.21317 0.94899 0.96116 0.88674 1.19895 1.02581 0.99233 0.87446 1.29126 0.93297 0.93288 0.94654 1.81241 1.08920 1.10016 1.11891 0.88383 0.89112 0.88314 0.75321 0.88336 0.89195 0.87786 0.88788 0.88146 0.89186 0.89079 0.94740 0.93449 0.92545 0.88725 0.90696 0.87564 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.80 36.00 0.35 -0.35 16 2 C 0.24 2.32 6.83 -82.12 -0.56 1.76 16 3 N -0.47 -5.89 10.40 -10.05 -0.10 -6.00 16 4 C 0.45 6.21 8.99 -323.14 -2.91 3.31 16 5 N -0.53 -7.42 11.25 -15.66 -0.18 -7.59 16 6 C 0.25 2.72 12.98 -91.96 -1.19 1.53 16 7 N -0.34 -4.18 12.68 29.26 0.37 -3.81 16 8 N -0.32 -4.06 3.90 -10.11 -0.04 -4.10 16 9 C 0.20 2.08 6.85 -81.64 -0.56 1.52 16 10 C -0.13 -1.02 9.31 36.00 0.34 -0.68 16 11 C -0.18 -1.64 5.12 -104.82 -0.54 -2.18 16 12 C -0.05 -0.46 3.57 -27.88 -0.10 -0.56 16 13 C -0.14 -1.33 4.10 -27.88 -0.11 -1.45 16 14 C 0.51 7.52 7.67 -10.98 -0.08 7.44 16 15 O -0.53 -10.25 15.56 5.56 0.09 -10.16 16 16 N -0.60 -9.34 2.46 -175.06 -0.43 -9.77 16 17 C 0.24 5.29 5.16 -5.19 -0.03 5.26 16 18 C -0.53 -13.23 9.39 -34.44 -0.32 -13.55 16 19 H 0.06 1.42 7.81 -52.49 -0.41 1.01 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -24.35 13.29 55.43 0.74 -23.62 16 22 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 C 0.12 1.32 5.17 -4.04 -0.02 1.30 16 27 C -0.05 -0.44 6.03 -29.52 -0.18 -0.62 16 28 C 0.21 2.37 15.43 -20.75 -0.32 2.05 16 29 N -0.44 -6.23 18.54 42.17 0.78 -5.45 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.48 6.01 -51.93 -0.31 0.17 16 33 H 0.23 1.36 8.06 -52.49 -0.42 0.93 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 0.75 5.89 -51.93 -0.31 0.45 16 37 H 0.09 0.87 6.68 -51.93 -0.35 0.53 16 38 H 0.10 0.82 5.97 -51.93 -0.31 0.51 16 39 H 0.09 0.74 6.67 -51.93 -0.35 0.40 16 40 H 0.09 0.61 7.19 -51.93 -0.37 0.24 16 41 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 42 H 0.05 1.18 7.42 -51.93 -0.39 0.79 16 43 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.09 1.20 8.07 -51.93 -0.42 0.79 16 45 H 0.07 0.69 6.44 -51.93 -0.33 0.35 16 46 H 0.11 0.67 7.22 -51.93 -0.38 0.29 16 47 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 401.31 15.07 6.05 6.05 Total: -1.00 -35.73 401.31 -10.09 -45.82 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -6.01 Total: -2.93 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: -6.33 Total: 6.34 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: 1.14 Total: -60.34 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.73 -10.09 -45.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282923.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.208 kcal (2) G-P(sol) polarization free energy of solvation -35.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds