Wall clock time and date at job start Tue Mar 31 2020 05:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42904 * 109.46874 * 2 1 4 4 C 1.35929 * 116.99460 * 179.97438 * 3 2 1 5 5 C 1.38772 * 119.98386 * 179.97438 * 4 3 2 6 6 C 1.38050 * 120.01948 * 179.97438 * 5 4 3 7 7 C 1.38885 * 119.97967 * 359.97438 * 6 5 4 8 8 N 1.40153 * 120.01232 * 180.02562 * 7 6 5 9 9 C 1.36973 * 124.82353 * 65.02204 * 8 7 6 10 10 C 1.50697 * 125.36439 * 0.02562 * 9 8 7 11 11 C 1.34488 * 109.27687 * 179.73744 * 9 8 7 12 12 C 1.46735 * 106.49716 * 0.26123 * 11 9 8 13 13 C 1.46307 * 127.06210 * 180.02562 * 12 11 9 14 14 N 1.31028 * 119.99835 * 179.97438 * 13 12 11 15 15 N 1.40106 * 119.99797 * 180.02562 * 14 13 12 16 16 C 1.34775 * 119.99705 * 179.97438 * 15 14 13 17 17 O 1.22064 * 120.00156 * 359.97438 * 16 15 14 18 18 C 1.40065 * 119.99548 * 180.02562 * 16 15 14 19 19 H 1.08002 * 120.00070 * 353.68150 * 18 16 15 20 20 C 1.40108 * 119.99551 * 173.69071 * 18 16 15 21 21 N 1.30653 * 120.00285 * 6.29153 * 20 18 16 22 22 Si 1.86807 * 119.99664 * 186.29485 * 20 18 16 23 23 H 1.48503 * 109.47142 * 94.98231 * 22 20 18 24 24 H 1.48495 * 109.47025 * 214.97990 * 22 20 18 25 25 H 1.48501 * 109.47130 * 334.98122 * 22 20 18 26 26 C 1.34761 * 124.82594 * 245.23650 * 8 7 6 27 27 C 1.50704 * 126.00187 * 359.97438 * 26 8 7 28 28 C 1.38894 * 119.97398 * 0.27072 * 7 6 5 29 29 C 1.38035 * 119.98499 * 359.47125 * 28 7 6 30 30 H 1.09004 * 109.47497 * 299.99915 * 1 2 3 31 31 H 1.09002 * 109.47239 * 60.00116 * 1 2 3 32 32 H 1.09004 * 109.47082 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47169 * 240.00367 * 2 1 3 34 34 H 1.09002 * 109.47239 * 119.99884 * 2 1 3 35 35 H 1.07999 * 119.99210 * 359.97438 * 5 4 3 36 36 H 1.07992 * 120.00912 * 180.02562 * 6 5 4 37 37 H 1.08998 * 109.46797 * 269.71594 * 10 9 8 38 38 H 1.09001 * 109.47264 * 149.72277 * 10 9 8 39 39 H 1.08999 * 109.47020 * 29.72001 * 10 9 8 40 40 H 1.08000 * 126.75382 * 180.23151 * 11 9 8 41 41 H 1.08001 * 119.99784 * 359.97438 * 13 12 11 42 42 H 0.97002 * 119.99694 * 359.97438 * 15 14 13 43 43 H 0.97004 * 119.99879 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.47042 * 270.34015 * 27 26 8 45 45 H 1.08994 * 109.46717 * 30.34107 * 27 26 8 46 46 H 1.08997 * 109.46693 * 150.33620 * 27 26 8 47 47 H 1.08007 * 120.00466 * 179.72936 * 28 7 6 48 48 H 1.08005 * 119.99893 * 180.23003 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3538 1.5254 0.0005 5 6 3.8840 2.8078 0.0000 6 6 5.2524 2.9895 0.0011 7 6 6.0987 1.8883 0.0033 8 7 7.4882 2.0719 0.0049 9 6 8.2001 2.6461 1.0246 10 6 7.6136 3.1734 2.3087 11 6 9.5056 2.6594 0.7020 12 6 9.6124 2.0494 -0.6283 13 6 10.8335 1.8382 -1.4061 14 7 10.7685 1.2757 -2.5877 15 7 11.9379 1.0729 -3.3322 16 6 11.8710 0.4939 -4.5474 17 8 10.7918 0.1457 -4.9991 18 6 13.0402 0.2908 -5.2915 19 1 13.9805 0.6883 -4.9391 20 6 12.9897 -0.4281 -6.4931 21 7 11.8376 -0.8028 -6.9823 22 14 14.5697 -0.8509 -7.3956 23 1 15.0106 -2.2153 -7.0092 24 1 14.3307 -0.8042 -8.8604 25 1 15.6239 0.1308 -7.0345 26 6 8.3131 1.7124 -0.9982 27 6 7.9024 1.0548 -2.2905 28 6 5.5675 0.6049 -0.0014 29 6 4.1990 0.4247 0.0029 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.2257 3.6641 -0.0012 36 1 5.6648 3.9876 0.0011 37 1 7.3551 4.2250 2.1851 38 1 8.3444 3.0708 3.1109 39 1 6.7174 2.6057 2.5589 40 1 10.3160 3.0439 1.3035 41 1 11.7884 2.1459 -1.0062 42 1 12.7955 1.3493 -2.9731 43 1 11.8027 -1.3008 -7.8140 44 1 7.9196 -0.0282 -2.1685 45 1 6.8949 1.3745 -2.5566 46 1 8.5955 1.3425 -3.0809 47 1 6.2252 -0.2518 -0.0041 48 1 3.7857 -0.5732 0.0031 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059197366.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:00 Heat of formation + Delta-G solvation = 37.086426 kcal Electronic energy + Delta-G solvation = -29929.342479 eV Core-core repulsion = 25758.500704 eV Total energy + Delta-G solvation = -4170.841775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 355.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.48390 -40.21284 -37.74791 -37.38605 -35.07007 -33.03353 -32.70397 -32.32177 -31.85579 -31.30063 -30.05918 -28.86453 -28.01590 -26.53489 -24.52422 -24.21142 -23.21362 -22.22916 -21.58604 -19.92333 -19.79858 -18.74607 -18.47678 -17.09028 -16.73978 -16.52932 -16.46232 -15.54868 -15.42685 -15.03700 -14.76107 -14.24615 -13.98550 -13.95047 -13.84888 -13.66738 -13.37820 -13.11699 -13.07810 -12.90904 -12.84070 -12.57409 -12.41226 -12.32123 -12.18763 -12.05394 -11.84001 -11.71533 -11.38283 -11.31984 -11.14285 -11.11871 -11.08730 -10.75573 -10.54141 -10.30356 -9.41999 -9.14039 -9.02549 -8.80188 -8.26837 -7.84779 -7.63578 -6.78489 -6.32861 -4.86210 0.86961 0.95364 2.10587 2.53969 2.74062 2.97712 3.08219 3.15054 3.19121 3.32111 3.82469 3.90889 4.23343 4.38026 4.46926 4.47283 4.53461 4.62994 4.75521 4.78223 4.88627 4.98975 5.12112 5.14149 5.29837 5.33214 5.36922 5.41937 5.49754 5.56871 5.61213 5.65687 5.75443 5.82628 5.88003 5.92101 5.93449 6.09110 6.14107 6.18017 6.23666 6.29048 6.59770 6.80480 6.94708 6.99742 7.23764 7.28183 7.45468 7.69088 7.98810 8.11337 8.84052 8.93728 9.46741 10.46671 10.78427 Molecular weight = 355.17amu Principal moments of inertia in cm(-1) A = 0.012567 B = 0.002013 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.480495 B =13903.790214 C =15817.311914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.052 3.948 3 O -0.314 6.314 4 C 0.135 3.865 5 C -0.142 4.142 6 C -0.069 4.069 7 C 0.084 3.916 8 N -0.397 5.397 9 C 0.003 3.997 10 C -0.079 4.079 11 C -0.164 4.164 12 C -0.124 4.124 13 C 0.069 3.931 14 N -0.211 5.211 15 N -0.597 5.597 16 C 0.562 3.438 17 O -0.559 6.559 18 C -0.539 4.539 19 H 0.069 0.931 20 C 0.089 3.911 21 N -0.745 5.745 22 Si 0.914 3.086 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.263 1.263 26 C 0.073 3.927 27 C -0.086 4.086 28 C -0.065 4.065 29 C -0.197 4.197 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.142 0.858 41 H 0.102 0.898 42 H 0.365 0.635 43 H 0.272 0.728 44 H 0.069 0.931 45 H 0.051 0.949 46 H 0.111 0.889 47 H 0.133 0.867 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.611 4.692 18.741 26.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 O -0.228 6.228 4 C 0.090 3.910 5 C -0.161 4.161 6 C -0.088 4.088 7 C -0.006 4.006 8 N -0.072 5.072 9 C -0.103 4.103 10 C -0.137 4.137 11 C -0.190 4.190 12 C -0.132 4.132 13 C -0.140 4.140 14 N -0.020 5.020 15 N -0.342 5.342 16 C 0.371 3.629 17 O -0.439 6.439 18 C -0.576 4.576 19 H 0.088 0.912 20 C -0.134 4.134 21 N -0.372 5.372 22 Si 0.738 3.262 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.187 1.187 26 C -0.042 4.042 27 C -0.143 4.143 28 C -0.085 4.085 29 C -0.216 4.216 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.160 0.840 41 H 0.119 0.881 42 H 0.200 0.800 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.130 0.870 47 H 0.151 0.849 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.411 3.996 17.426 26.390 hybrid contribution 2.120 -0.010 0.301 2.141 sum -17.290 3.986 17.727 25.082 Atomic orbital electron populations 1.21780 0.92554 1.03014 1.03583 1.22845 0.96046 0.81728 1.01703 1.86084 1.18755 1.29622 1.88356 1.19052 0.82439 0.94023 0.95519 1.20288 0.94377 0.95139 1.06263 1.21019 0.92041 0.98568 0.97200 1.17579 0.82072 0.93559 1.07347 1.40808 1.03240 1.48345 1.14844 1.20154 0.91204 1.06691 0.92231 1.20260 1.00754 1.00335 0.92320 1.21623 0.94409 1.06764 0.96196 1.18967 0.89733 1.09153 0.95336 1.23174 0.95334 1.02605 0.92931 1.74971 1.13551 1.08940 1.04534 1.47927 1.02793 1.64113 1.19373 1.16525 0.91007 0.77974 0.77426 1.90723 1.30625 1.53692 1.68862 1.19619 0.94713 1.36808 1.06463 0.91246 1.25738 0.97172 0.93880 0.96624 1.70056 1.25424 1.25404 1.16351 0.86246 0.81828 0.79492 0.78586 1.19567 1.20208 1.18654 1.21209 0.88766 1.02947 0.91285 1.20502 1.01569 0.99567 0.92655 1.21053 0.94799 0.96296 0.96310 1.21136 0.93375 0.98532 1.08564 0.91504 0.91404 0.90234 0.91688 0.91853 0.84418 0.84606 0.91512 0.90443 0.92173 0.83985 0.88065 0.79963 0.91671 0.91194 0.93005 0.87049 0.84866 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.28 37.16 0.38 -0.34 16 2 C 0.05 0.33 5.46 37.16 0.20 0.53 16 3 O -0.31 -2.91 10.14 -19.52 -0.20 -3.11 16 4 C 0.14 1.34 6.69 -39.19 -0.26 1.08 16 5 C -0.14 -1.36 9.98 -39.45 -0.39 -1.76 16 6 C -0.07 -0.73 9.61 -39.41 -0.38 -1.11 16 7 C 0.08 1.04 4.43 -83.57 -0.37 0.67 16 8 N -0.40 -5.68 2.74 -51.86 -0.14 -5.82 16 9 C 0.00 0.04 6.76 -81.62 -0.55 -0.51 16 10 C -0.08 -0.73 9.81 36.00 0.35 -0.38 16 11 C -0.16 -2.32 10.99 -37.48 -0.41 -2.73 16 12 C -0.12 -2.16 6.34 -102.86 -0.65 -2.81 16 13 C 0.07 1.31 11.05 -14.65 -0.16 1.15 16 14 N -0.21 -4.92 8.64 32.08 0.28 -4.65 16 15 N -0.60 -14.84 6.26 28.80 0.18 -14.66 16 16 C 0.56 16.71 7.62 -15.57 -0.12 16.59 16 17 O -0.56 -18.80 15.21 4.86 0.07 -18.72 16 18 C -0.54 -15.28 9.22 -38.20 -0.35 -15.63 16 19 H 0.07 1.78 7.86 -52.49 -0.41 1.36 16 20 C 0.09 2.46 5.49 -17.35 -0.10 2.37 16 21 N -0.74 -22.11 11.72 55.55 0.65 -21.46 16 22 Si 0.91 19.75 29.56 -169.99 -5.03 14.73 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 25 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 26 C 0.07 1.24 6.88 -80.94 -0.56 0.69 16 27 C -0.09 -1.55 9.25 36.01 0.33 -1.22 16 28 C -0.07 -0.74 9.59 -39.41 -0.38 -1.12 16 29 C -0.20 -1.91 9.03 -39.46 -0.36 -2.26 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 34 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 35 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.54 7.75 -51.93 -0.40 0.14 16 40 H 0.14 1.65 8.06 -52.49 -0.42 1.22 16 41 H 0.10 1.66 8.04 -52.49 -0.42 1.24 16 42 H 0.37 7.77 8.62 -182.59 -1.57 6.20 16 43 H 0.27 7.23 8.29 -40.82 -0.34 6.90 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.05 0.84 7.77 -51.93 -0.40 0.44 16 46 H 0.11 2.45 6.34 -51.93 -0.33 2.12 16 47 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 48 H 0.14 1.01 6.29 -52.48 -0.33 0.68 16 LS Contribution 411.41 15.07 6.20 6.20 Total: -1.00 -36.66 411.41 -9.78 -46.44 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -8.03 Total: 7.84 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -3.77 Total: -6.80 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.97 Total: -46.58 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.12 Total: -21.84 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.66 -9.78 -46.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059197366.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.530 kcal (2) G-P(sol) polarization free energy of solvation -36.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds