Wall clock time and date at job start Tue Mar 31 2020 05:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08990 * 109.47475 * 2 1 4 4 C 1.50696 * 109.47107 * 120.00987 * 2 1 3 5 5 H 1.07994 * 120.00672 * 114.40651 * 4 2 1 6 6 C 1.37884 * 119.99487 * 294.40089 * 4 2 1 7 7 N 1.31511 * 120.00068 * 0.58324 * 6 4 2 8 8 Si 1.86801 * 119.99641 * 180.85613 * 6 4 2 9 9 H 1.48498 * 109.47443 * 264.73134 * 8 6 4 10 10 H 1.48495 * 109.47267 * 24.73659 * 8 6 4 11 11 H 1.48509 * 109.46836 * 144.73171 * 8 6 4 12 12 N 1.46907 * 109.46927 * 240.00159 * 2 1 3 13 13 C 1.46901 * 110.99508 * 105.28918 * 12 2 1 14 14 C 1.53117 * 109.52276 * 270.04246 * 13 12 2 15 15 C 1.53045 * 109.27689 * 182.50265 * 14 13 12 16 16 N 1.46856 * 109.57097 * 59.08975 * 15 14 13 17 17 C 1.46902 * 110.99616 * 174.19101 * 16 15 14 18 18 C 1.50697 * 109.47193 * 294.20669 * 17 16 15 19 19 C 1.38264 * 119.97819 * 90.00538 * 18 17 16 20 20 C 1.38207 * 120.03501 * 179.97438 * 19 18 17 21 21 C 1.38351 * 120.00187 * 359.97438 * 20 19 18 22 22 Cl 1.73591 * 120.02024 * 179.97438 * 21 20 19 23 23 C 1.38443 * 119.95909 * 0.02562 * 21 20 19 24 24 Cl 1.73602 * 120.01942 * 180.02562 * 23 21 20 25 25 C 1.38200 * 119.97899 * 269.72485 * 18 17 16 26 26 C 1.46845 * 111.19340 * 298.28517 * 16 15 14 27 27 C 1.53039 * 109.52286 * 61.74691 * 26 16 15 28 28 H 1.08998 * 109.46841 * 293.40454 * 1 2 3 29 29 H 1.09002 * 109.47161 * 53.40839 * 1 2 3 30 30 H 1.09005 * 109.47281 * 173.40617 * 1 2 3 31 31 H 0.96997 * 119.99824 * 180.27031 * 7 6 4 32 32 H 1.00893 * 111.00307 * 341.33976 * 12 2 1 33 33 H 1.08997 * 109.52779 * 30.17217 * 13 12 2 34 34 H 1.09003 * 109.50476 * 302.38441 * 14 13 12 35 35 H 1.09002 * 109.50277 * 62.50391 * 14 13 12 36 36 H 1.08993 * 109.41457 * 299.07286 * 15 14 13 37 37 H 1.09000 * 109.46390 * 179.13092 * 15 14 13 38 38 H 1.09004 * 109.47048 * 54.21354 * 17 16 15 39 39 H 1.09004 * 109.46686 * 174.20570 * 17 16 15 40 40 H 1.07994 * 119.98466 * 359.97263 * 19 18 17 41 41 H 1.07996 * 120.00064 * 179.97438 * 20 19 18 42 42 H 1.08006 * 120.00118 * 0.02562 * 25 18 17 43 43 H 1.09004 * 109.46566 * 301.72894 * 26 16 15 44 44 H 1.08999 * 109.45150 * 181.75186 * 26 16 15 45 45 H 1.08998 * 109.50092 * 180.87407 * 27 26 16 46 46 H 1.08996 * 109.50225 * 60.75756 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.5766 -1.6383 1.1338 6 6 1.7969 -0.1762 2.4794 7 7 1.1242 0.9476 2.5977 8 14 2.4402 -1.0445 4.0031 9 1 1.3731 -1.9090 4.5679 10 1 3.6128 -1.8797 3.6389 11 1 2.8464 -0.0350 5.0137 12 7 2.0196 -0.6925 -1.1995 13 6 2.5360 0.2654 -2.1863 14 6 1.4032 0.6974 -3.1215 15 6 1.9602 1.6465 -4.1851 16 7 3.0166 0.9669 -4.9460 17 6 3.4787 1.7999 -6.0643 18 6 2.3614 1.9665 -7.0618 19 6 1.4793 3.0243 -6.9409 20 6 0.4546 3.1785 -7.8554 21 6 0.3112 2.2743 -8.8927 22 17 -0.9762 2.4671 -10.0412 23 6 1.1945 1.2151 -9.0137 24 17 1.0165 0.0801 -10.3151 25 6 2.2226 1.0651 -8.1001 26 6 4.1364 0.5859 -4.0758 27 6 3.6446 -0.3959 -3.0099 28 1 -0.3633 0.4082 0.9431 29 1 -0.3633 0.6126 -0.8251 30 1 -0.3634 -1.0209 -0.1180 31 1 0.9621 1.3256 3.4761 32 1 1.2988 -1.2727 -1.6017 33 1 2.9364 1.1387 -1.6715 34 1 0.9764 -0.1807 -3.6061 35 1 0.6308 1.2076 -2.5459 36 1 2.3734 2.5311 -3.7007 37 1 1.1592 1.9438 -4.8619 38 1 3.7794 2.7781 -5.6888 39 1 4.3291 1.3194 -6.5481 40 1 1.5911 3.7305 -6.1316 41 1 -0.2344 4.0047 -7.7602 42 1 2.9145 0.2413 -8.1963 43 1 4.5393 1.4756 -3.5918 44 1 4.9157 0.1129 -4.6733 45 1 4.4726 -0.6665 -2.3547 46 1 3.2541 -1.2917 -3.4927 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067407635.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:42 Heat of formation + Delta-G solvation = 8.956713 kcal Electronic energy + Delta-G solvation = -26709.452941 eV Core-core repulsion = 22877.949023 eV Total energy + Delta-G solvation = -3831.503918 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 356.112 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.21685 -38.83739 -36.99212 -36.84945 -35.93132 -33.53418 -32.01132 -31.36896 -30.59289 -30.34102 -27.72657 -25.56487 -25.05370 -23.56689 -22.76147 -22.39952 -21.32082 -20.36044 -19.40311 -17.63300 -16.48949 -16.37134 -16.15967 -15.85500 -14.96260 -14.81163 -14.58863 -14.39788 -14.27594 -14.06379 -13.77381 -13.71785 -13.26897 -12.65706 -12.54601 -12.31879 -12.22577 -12.17552 -12.05802 -11.68473 -11.64930 -11.48955 -11.32650 -11.22324 -11.12372 -10.99828 -10.89353 -10.79321 -10.48443 -10.30570 -10.27574 -9.98944 -9.67373 -9.30808 -9.02158 -8.95341 -8.38516 -8.33887 -7.19702 -5.95912 -3.97998 0.54927 0.73287 1.50049 1.86825 3.00275 3.33477 3.40242 3.45378 3.92609 4.22099 4.33575 4.46391 4.68499 4.69860 4.83437 4.95427 5.07075 5.09979 5.19640 5.27437 5.35361 5.39191 5.44884 5.49544 5.56633 5.60174 5.66468 5.79304 5.91999 6.00174 6.02821 6.06601 6.20450 6.25668 6.32599 6.56215 6.67243 6.72401 6.86565 6.97968 7.06750 7.07526 7.35767 7.70405 7.93556 8.29822 8.58604 8.66591 9.10410 9.66939 11.11444 Molecular weight = 356.11amu Principal moments of inertia in cm(-1) A = 0.019745 B = 0.001924 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.747962 B =14551.820925 C =15017.586351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.211 3.789 3 H 0.029 0.971 4 C -0.489 4.489 5 H 0.062 0.938 6 C 0.052 3.948 7 N -0.900 5.900 8 Si 0.895 3.105 9 H -0.283 1.283 10 H -0.274 1.274 11 H -0.288 1.288 12 N -0.680 5.680 13 C 0.090 3.910 14 C -0.143 4.143 15 C 0.056 3.944 16 N -0.531 5.531 17 C 0.090 3.910 18 C -0.055 4.055 19 C -0.097 4.097 20 C -0.099 4.099 21 C -0.034 4.034 22 Cl -0.054 7.054 23 C -0.031 4.031 24 Cl -0.052 7.052 25 C -0.078 4.078 26 C 0.058 3.942 27 C -0.102 4.102 28 H 0.080 0.920 29 H 0.008 0.992 30 H 0.029 0.971 31 H 0.258 0.742 32 H 0.324 0.676 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.032 0.968 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.087 0.913 40 H 0.137 0.863 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.033 0.967 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.576 5.306 -25.832 26.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.104 3.896 3 H 0.047 0.953 4 C -0.528 4.528 5 H 0.080 0.920 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.723 3.277 9 H -0.210 1.210 10 H -0.199 1.199 11 H -0.215 1.215 12 N -0.308 5.308 13 C -0.021 4.021 14 C -0.182 4.182 15 C -0.072 4.072 16 N -0.256 5.256 17 C -0.037 4.037 18 C -0.056 4.056 19 C -0.116 4.116 20 C -0.117 4.117 21 C -0.062 4.062 22 Cl -0.025 7.025 23 C -0.058 4.058 24 Cl -0.023 7.023 25 C -0.097 4.097 26 C -0.070 4.070 27 C -0.140 4.140 28 H 0.099 0.901 29 H 0.027 0.973 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.141 0.859 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.066 0.934 39 H 0.106 0.894 40 H 0.155 0.845 41 H 0.160 0.840 42 H 0.161 0.839 43 H 0.051 0.949 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.828 4.767 -25.786 26.287 hybrid contribution -0.524 0.718 0.692 1.126 sum 1.304 5.485 -25.094 25.720 Atomic orbital electron populations 1.22370 1.00389 0.98157 1.01015 1.19257 0.89755 0.93766 0.86833 0.95346 1.21251 1.33670 1.08092 0.89743 0.91976 1.24980 0.95615 0.95180 0.99026 1.69918 1.41225 1.19471 1.23440 0.86535 0.79176 0.79227 0.82764 1.20957 1.19858 1.21452 1.60807 1.41191 1.22363 1.06422 1.21664 0.93672 0.95010 0.91743 1.22420 0.99502 0.99632 0.96676 1.22161 0.94243 0.95473 0.95342 1.61987 1.11421 1.41902 1.10299 1.21054 0.94496 0.97020 0.91148 1.19839 0.96902 0.93845 0.94981 1.21194 0.93905 0.97997 0.98518 1.21019 0.99021 0.98688 0.93013 1.20783 0.93009 0.97272 0.95089 1.98390 1.48319 1.97041 1.58715 1.20773 0.97993 0.93172 0.93889 1.98393 1.97202 1.59400 1.47273 1.20915 0.96663 0.99396 0.92756 1.22153 0.92064 0.98455 0.94315 1.21575 0.99049 0.97916 0.95490 0.90101 0.97320 0.95240 0.93193 0.85915 0.91473 0.91467 0.91457 0.94929 0.91021 0.93396 0.89439 0.84534 0.84013 0.83858 0.94857 0.90926 0.90884 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 9.03 37.16 0.34 -3.41 16 2 C 0.21 5.18 2.62 -68.86 -0.18 5.00 16 3 H 0.03 0.77 7.10 -51.93 -0.37 0.40 16 4 C -0.49 -13.46 8.77 -34.44 -0.30 -13.76 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.05 1.44 5.30 -17.82 -0.09 1.35 16 7 N -0.90 -25.77 11.71 55.43 0.65 -25.12 16 8 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 N -0.68 -13.93 6.13 -100.83 -0.62 -14.55 16 13 C 0.09 1.53 2.52 -67.59 -0.17 1.36 16 14 C -0.14 -2.11 5.39 -26.65 -0.14 -2.26 16 15 C 0.06 0.68 5.15 -3.82 -0.02 0.66 16 16 N -0.53 -5.87 4.65 -236.10 -1.10 -6.96 16 17 C 0.09 0.77 5.12 -4.98 -0.03 0.75 16 18 C -0.05 -0.47 4.89 -104.63 -0.51 -0.98 16 19 C -0.10 -0.78 7.87 -39.58 -0.31 -1.09 16 20 C -0.10 -0.80 9.83 -39.55 -0.39 -1.19 16 21 C -0.03 -0.31 6.32 -39.46 -0.25 -0.56 16 22 Cl -0.05 -0.49 27.96 -51.86 -1.45 -1.94 16 23 C -0.03 -0.29 6.32 -39.46 -0.25 -0.54 16 24 Cl -0.05 -0.48 27.96 -51.86 -1.45 -1.93 16 25 C -0.08 -0.69 9.48 -39.55 -0.38 -1.07 16 26 C 0.06 0.67 5.46 -3.83 -0.02 0.65 16 27 C -0.10 -1.46 5.70 -26.65 -0.15 -1.61 16 28 H 0.08 2.12 6.38 -51.93 -0.33 1.79 16 29 H 0.01 0.17 6.91 -51.93 -0.36 -0.19 16 30 H 0.03 0.65 8.02 -51.93 -0.42 0.23 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.32 6.31 7.75 -39.30 -0.30 6.01 16 33 H 0.07 1.28 7.24 -51.93 -0.38 0.90 16 34 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 35 H 0.07 1.09 6.91 -51.93 -0.36 0.73 16 36 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.81 5.75 -51.93 -0.30 0.51 16 38 H 0.05 0.38 8.07 -51.93 -0.42 -0.03 16 39 H 0.09 0.64 7.93 -51.93 -0.41 0.23 16 40 H 0.14 0.92 7.95 -52.49 -0.42 0.50 16 41 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 42 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 43 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.72 8.01 -51.93 -0.42 0.30 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 389.98 15.07 5.88 5.88 Total: -1.00 -28.50 389.98 -12.95 -41.46 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.98 Total: 3.38 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -2.86 Total: -16.72 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -1.07 Total: -46.64 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -2.90 Total: -3.87 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.50 -12.95 -41.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067407635.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.412 kcal (2) G-P(sol) polarization free energy of solvation -28.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds