Wall clock time and date at job start Tue Mar 31 2020 05:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08990 * 109.47475 * 2 1 4 4 C 1.50696 * 109.47107 * 120.00987 * 2 1 3 5 5 H 1.07994 * 120.00672 * 114.40651 * 4 2 1 6 6 C 1.37884 * 119.99487 * 294.40089 * 4 2 1 7 7 N 1.31511 * 120.00068 * 0.58324 * 6 4 2 8 8 Si 1.86801 * 119.99641 * 180.85613 * 6 4 2 9 9 H 1.48498 * 109.47443 * 264.73134 * 8 6 4 10 10 H 1.48495 * 109.47267 * 24.73659 * 8 6 4 11 11 H 1.48509 * 109.46836 * 144.73171 * 8 6 4 12 12 N 1.46907 * 109.46927 * 240.00159 * 2 1 3 13 13 C 1.46901 * 110.99508 * 105.28918 * 12 2 1 14 14 C 1.53117 * 109.52276 * 270.04246 * 13 12 2 15 15 C 1.53045 * 109.27689 * 182.50265 * 14 13 12 16 16 N 1.46856 * 109.57097 * 59.08975 * 15 14 13 17 17 C 1.46902 * 110.99616 * 174.19101 * 16 15 14 18 18 C 1.50697 * 109.47193 * 294.20669 * 17 16 15 19 19 C 1.38264 * 119.97819 * 90.00538 * 18 17 16 20 20 C 1.38207 * 120.03501 * 179.97438 * 19 18 17 21 21 C 1.38351 * 120.00187 * 359.97438 * 20 19 18 22 22 Cl 1.73591 * 120.02024 * 179.97438 * 21 20 19 23 23 C 1.38443 * 119.95909 * 0.02562 * 21 20 19 24 24 Cl 1.73602 * 120.01942 * 180.02562 * 23 21 20 25 25 C 1.38200 * 119.97899 * 269.72485 * 18 17 16 26 26 C 1.46845 * 111.19340 * 298.28517 * 16 15 14 27 27 C 1.53039 * 109.52286 * 61.74691 * 26 16 15 28 28 H 1.08998 * 109.46841 * 293.40454 * 1 2 3 29 29 H 1.09002 * 109.47161 * 53.40839 * 1 2 3 30 30 H 1.09005 * 109.47281 * 173.40617 * 1 2 3 31 31 H 0.96997 * 119.99824 * 180.27031 * 7 6 4 32 32 H 1.00893 * 111.00307 * 341.33976 * 12 2 1 33 33 H 1.08997 * 109.52779 * 30.17217 * 13 12 2 34 34 H 1.09003 * 109.50476 * 302.38441 * 14 13 12 35 35 H 1.09002 * 109.50277 * 62.50391 * 14 13 12 36 36 H 1.08993 * 109.41457 * 299.07286 * 15 14 13 37 37 H 1.09000 * 109.46390 * 179.13092 * 15 14 13 38 38 H 1.09004 * 109.47048 * 54.21354 * 17 16 15 39 39 H 1.09004 * 109.46686 * 174.20570 * 17 16 15 40 40 H 1.07994 * 119.98466 * 359.97263 * 19 18 17 41 41 H 1.07996 * 120.00064 * 179.97438 * 20 19 18 42 42 H 1.08006 * 120.00118 * 0.02562 * 25 18 17 43 43 H 1.09004 * 109.46566 * 301.72894 * 26 16 15 44 44 H 1.08999 * 109.45150 * 181.75186 * 26 16 15 45 45 H 1.08998 * 109.50092 * 180.87407 * 27 26 16 46 46 H 1.08996 * 109.50225 * 60.75756 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0323 -0.7106 1.2303 5 1 2.5766 -1.6383 1.1338 6 6 1.7969 -0.1762 2.4794 7 7 1.1242 0.9476 2.5977 8 14 2.4402 -1.0445 4.0031 9 1 1.3731 -1.9090 4.5679 10 1 3.6128 -1.8797 3.6389 11 1 2.8464 -0.0350 5.0137 12 7 2.0196 -0.6925 -1.1995 13 6 2.5360 0.2654 -2.1863 14 6 1.4032 0.6974 -3.1215 15 6 1.9602 1.6465 -4.1851 16 7 3.0166 0.9669 -4.9460 17 6 3.4787 1.7999 -6.0643 18 6 2.3614 1.9665 -7.0618 19 6 1.4793 3.0243 -6.9409 20 6 0.4546 3.1785 -7.8554 21 6 0.3112 2.2743 -8.8927 22 17 -0.9762 2.4671 -10.0412 23 6 1.1945 1.2151 -9.0137 24 17 1.0165 0.0801 -10.3151 25 6 2.2226 1.0651 -8.1001 26 6 4.1364 0.5859 -4.0758 27 6 3.6446 -0.3959 -3.0099 28 1 -0.3633 0.4082 0.9431 29 1 -0.3633 0.6126 -0.8251 30 1 -0.3634 -1.0209 -0.1180 31 1 0.9621 1.3256 3.4761 32 1 1.2988 -1.2727 -1.6017 33 1 2.9364 1.1387 -1.6715 34 1 0.9764 -0.1807 -3.6061 35 1 0.6308 1.2076 -2.5459 36 1 2.3734 2.5311 -3.7007 37 1 1.1592 1.9438 -4.8619 38 1 3.7794 2.7781 -5.6888 39 1 4.3291 1.3194 -6.5481 40 1 1.5911 3.7305 -6.1316 41 1 -0.2344 4.0047 -7.7602 42 1 2.9145 0.2413 -8.1963 43 1 4.5393 1.4756 -3.5918 44 1 4.9157 0.1129 -4.6733 45 1 4.4726 -0.6665 -2.3547 46 1 3.2541 -1.2917 -3.4927 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067407635.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:41 Heat of formation + Delta-G solvation = -6.405133 kcal Electronic energy + Delta-G solvation = -26710.119081 eV Core-core repulsion = 22877.949023 eV Total energy + Delta-G solvation = -3832.170058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 356.112 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95495 -39.85807 -37.87533 -37.53563 -37.23178 -35.07168 -33.41264 -32.07434 -31.76314 -31.44003 -29.18241 -27.19464 -26.48684 -24.35771 -23.69680 -23.45470 -22.26680 -22.06014 -20.65960 -18.30291 -18.28828 -17.22506 -17.05770 -16.79557 -16.67765 -15.91858 -15.66692 -15.40831 -15.29457 -14.99803 -14.89856 -14.82915 -14.39419 -14.13772 -13.96242 -13.41188 -13.25104 -13.10746 -12.99526 -12.90474 -12.83445 -12.74804 -12.64979 -12.40907 -12.27406 -12.21002 -12.09987 -11.99060 -11.96195 -11.89950 -11.74884 -11.56948 -11.27311 -10.81096 -10.46275 -9.95516 -9.69933 -9.23759 -8.88495 -8.06982 -6.17411 -0.11540 0.10240 0.82072 1.20187 1.42361 1.43360 1.54784 2.33630 2.45476 3.09414 3.20645 3.58166 3.61573 3.69522 3.91690 4.01579 4.08308 4.12687 4.19257 4.28450 4.35598 4.48066 4.52875 4.66945 4.67705 4.73498 4.76719 4.80845 4.85471 4.86530 4.93599 4.97116 5.03455 5.05813 5.11348 5.19844 5.35004 5.39929 5.40077 5.50882 5.59046 5.71217 5.83566 6.11789 6.14419 6.32299 6.72574 6.93590 6.98150 7.52279 8.98058 Molecular weight = 356.11amu Principal moments of inertia in cm(-1) A = 0.019745 B = 0.001924 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.747962 B =14551.820925 C =15017.586351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.220 3.780 3 H -0.004 1.004 4 C -0.508 4.508 5 H 0.052 0.948 6 C 0.005 3.995 7 N -0.926 5.926 8 Si 0.957 3.043 9 H -0.277 1.277 10 H -0.270 1.270 11 H -0.285 1.285 12 N -0.685 5.685 13 C 0.090 3.910 14 C -0.134 4.134 15 C 0.064 3.936 16 N -0.536 5.536 17 C 0.092 3.908 18 C -0.059 4.059 19 C -0.097 4.097 20 C -0.100 4.100 21 C -0.045 4.045 22 Cl -0.058 7.058 23 C -0.043 4.043 24 Cl -0.057 7.057 25 C -0.080 4.080 26 C 0.065 3.935 27 C -0.094 4.094 28 H 0.050 0.950 29 H 0.029 0.971 30 H 0.036 0.964 31 H 0.260 0.740 32 H 0.330 0.670 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.031 0.969 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.105 0.895 40 H 0.152 0.848 41 H 0.158 0.842 42 H 0.152 0.848 43 H 0.032 0.968 44 H 0.097 0.903 45 H 0.061 0.939 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.283 5.294 -26.876 27.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.111 3.889 3 H 0.014 0.986 4 C -0.547 4.547 5 H 0.070 0.930 6 C -0.192 4.192 7 N -0.566 5.566 8 Si 0.783 3.217 9 H -0.203 1.203 10 H -0.195 1.195 11 H -0.210 1.210 12 N -0.314 5.314 13 C -0.020 4.020 14 C -0.173 4.173 15 C -0.065 4.065 16 N -0.261 5.261 17 C -0.034 4.034 18 C -0.060 4.060 19 C -0.116 4.116 20 C -0.118 4.118 21 C -0.073 4.073 22 Cl -0.029 7.029 23 C -0.071 4.071 24 Cl -0.028 7.028 25 C -0.100 4.100 26 C -0.063 4.063 27 C -0.133 4.133 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.148 0.852 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.050 0.950 37 H 0.102 0.898 38 H 0.077 0.923 39 H 0.123 0.877 40 H 0.169 0.831 41 H 0.176 0.824 42 H 0.170 0.830 43 H 0.050 0.950 44 H 0.116 0.884 45 H 0.079 0.921 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.539 4.752 -26.858 27.393 hybrid contribution -0.743 0.741 0.973 1.431 sum 1.796 5.492 -25.885 26.522 Atomic orbital electron populations 1.22181 0.99565 0.98733 1.00192 1.18976 0.90239 0.91873 0.87805 0.98620 1.21556 1.33835 1.07972 0.91333 0.92997 1.25726 0.95814 0.95859 1.01845 1.70036 1.41975 1.20566 1.24053 0.85562 0.78693 0.78229 0.79239 1.20292 1.19510 1.21033 1.60705 1.41023 1.23159 1.06515 1.21688 0.95183 0.93683 0.91480 1.22248 0.98139 1.00138 0.96803 1.22041 0.95067 0.94552 0.94832 1.61941 1.11081 1.42630 1.10421 1.21115 0.94918 0.97338 0.90065 1.19898 0.97111 0.94017 0.94958 1.21408 0.93454 0.98023 0.98700 1.21242 0.99285 0.98799 0.92488 1.20962 0.93094 0.97702 0.95514 1.98387 1.48482 1.97055 1.58934 1.20907 0.98568 0.93411 0.94183 1.98388 1.97251 1.59586 1.47555 1.21050 0.96585 0.99711 0.92625 1.22076 0.92587 0.97763 0.93885 1.21471 0.97495 0.98554 0.95756 0.93061 0.95240 0.94487 0.93149 0.85231 0.94061 0.91362 0.93163 0.95037 0.89750 0.92344 0.87712 0.83072 0.82429 0.82990 0.94967 0.88435 0.92068 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.98 9.03 71.98 0.65 -6.33 16 2 C 0.22 11.01 2.62 44.17 0.12 11.12 16 3 H 0.00 -0.23 7.10 -2.39 -0.02 -0.25 16 4 C -0.51 -28.46 8.77 25.60 0.22 -28.23 16 5 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 6 C 0.01 0.29 5.30 84.66 0.45 0.74 16 7 N -0.93 -53.83 11.71 21.45 0.25 -53.58 16 8 Si 0.96 44.41 29.54 68.60 2.03 46.43 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 12 N -0.69 -28.39 6.13 -472.92 -2.90 -31.29 16 13 C 0.09 3.07 2.52 44.99 0.11 3.18 16 14 C -0.13 -3.86 5.39 30.65 0.17 -3.69 16 15 C 0.06 1.42 5.15 86.33 0.44 1.86 16 16 N -0.54 -10.42 4.65 -900.88 -4.19 -14.60 16 17 C 0.09 1.28 5.12 85.56 0.44 1.72 16 18 C -0.06 -0.86 4.89 -19.87 -0.10 -0.96 16 19 C -0.10 -1.31 7.87 22.27 0.18 -1.13 16 20 C -0.10 -1.41 9.83 22.29 0.22 -1.19 16 21 C -0.05 -0.77 6.32 22.35 0.14 -0.63 16 22 Cl -0.06 -0.99 27.96 -2.72 -0.08 -1.07 16 23 C -0.04 -0.76 6.32 22.35 0.14 -0.62 16 24 Cl -0.06 -1.01 27.96 -2.72 -0.08 -1.09 16 25 C -0.08 -1.26 9.48 22.29 0.21 -1.04 16 26 C 0.06 1.34 5.46 86.33 0.47 1.81 16 27 C -0.09 -2.61 5.70 30.65 0.17 -2.44 16 28 H 0.05 2.73 6.38 -2.39 -0.02 2.71 16 29 H 0.03 1.22 6.91 -2.39 -0.02 1.21 16 30 H 0.04 1.64 8.02 -2.38 -0.02 1.62 16 31 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 32 H 0.33 12.81 7.75 -89.70 -0.70 12.12 16 33 H 0.04 1.61 7.24 -2.39 -0.02 1.60 16 34 H 0.07 1.96 8.09 -2.39 -0.02 1.94 16 35 H 0.05 1.61 6.91 -2.39 -0.02 1.59 16 36 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 1.69 5.75 -2.39 -0.01 1.68 16 38 H 0.06 0.73 8.07 -2.38 -0.02 0.71 16 39 H 0.10 1.13 7.93 -2.38 -0.02 1.12 16 40 H 0.15 1.57 7.95 -2.91 -0.02 1.55 16 41 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 42 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 43 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.10 1.58 8.01 -2.39 -0.02 1.57 16 45 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -61.71 389.98 -0.63 -62.34 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.29 Total: 18.68 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 4.04 Total: -25.83 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -6.84 Total: -99.47 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -0.15 Total: -2.16 kcal Total: -61.71 -0.63 -62.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067407635.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.932 kcal (2) G-P(sol) polarization free energy of solvation -61.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds