Wall clock time and date at job start Tue Mar 31 2020 05:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00170 * 2 1 4 4 H 1.48499 * 109.47257 * 270.00456 * 3 2 1 5 5 H 1.48503 * 109.47212 * 30.00254 * 3 2 1 6 6 H 1.48498 * 109.47216 * 150.00174 * 3 2 1 7 7 C 1.37880 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00199 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99990 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47312 * 180.02562 * 9 7 2 11 11 O 1.42899 * 109.47534 * 180.02562 * 10 9 7 12 12 C 1.35983 * 117.00354 * 180.02562 * 11 10 9 13 13 C 1.38787 * 120.49527 * 0.25209 * 12 11 10 14 14 C 1.38786 * 118.44583 * 180.24565 * 13 12 11 15 15 C 1.38077 * 119.36062 * 359.74678 * 14 13 12 16 16 N 1.31955 * 120.95712 * 359.97438 * 15 14 13 17 17 C 1.32297 * 121.68886 * 0.02562 * 16 15 14 18 18 N 1.39487 * 119.72883 * 179.97438 * 17 16 15 19 19 C 1.34778 * 120.00137 * 359.97438 * 18 17 16 20 20 O 1.21585 * 120.00003 * 0.02562 * 19 18 17 21 21 C 1.47572 * 119.99907 * 180.02562 * 19 18 17 22 22 C 1.39722 * 120.08616 * 0.02562 * 21 19 18 23 23 C 1.37756 * 120.00272 * 179.75251 * 22 21 19 24 24 C 1.38862 * 120.22215 * 0.44452 * 23 22 21 25 25 C 1.39542 * 120.05647 * 359.55718 * 24 23 22 26 26 C 1.38126 * 119.98494 * 0.22281 * 25 24 23 27 27 O 1.36538 * 108.59744 * 180.23541 * 25 24 23 28 28 C 1.43977 * 105.44817 * 342.69639 * 27 25 24 29 29 O 1.36365 * 131.35362 * 179.86623 * 24 23 22 30 30 H 0.96999 * 119.99972 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.47385 * 60.00062 * 9 7 2 32 32 H 1.08999 * 109.47084 * 300.00413 * 9 7 2 33 33 H 1.09003 * 109.47151 * 59.99544 * 10 9 7 34 34 H 1.08999 * 109.47077 * 300.00042 * 10 9 7 35 35 H 1.08001 * 120.77601 * 359.97438 * 13 12 11 36 36 H 1.08001 * 120.31933 * 179.72005 * 14 13 12 37 37 H 1.08004 * 119.52209 * 180.02562 * 15 14 13 38 38 H 0.97006 * 119.99982 * 179.97438 * 18 17 16 39 39 H 1.08004 * 119.99516 * 359.97438 * 22 21 19 40 40 H 1.08000 * 119.89168 * 180.30790 * 23 22 21 41 41 H 1.07995 * 120.04820 * 180.02562 * 26 25 24 42 42 H 1.09005 * 110.56269 * 268.61330 * 28 27 25 43 43 H 1.09000 * 110.56746 * 145.75573 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 8 1.5307 -4.8997 -0.0011 12 6 2.2713 -6.0401 -0.0007 13 6 3.6578 -5.9796 0.0056 14 6 4.3716 -7.1698 0.0006 15 6 3.6877 -8.3693 -0.0051 16 7 2.3684 -8.3985 -0.0053 17 6 1.6488 -7.2884 -0.0006 18 7 0.2561 -7.3669 -0.0016 19 6 -0.3510 -8.5702 -0.0078 20 8 0.3152 -9.5872 -0.0120 21 6 -1.8244 -8.6532 -0.0094 22 6 -2.5917 -7.4855 -0.0050 23 6 -3.9670 -7.5650 -0.0116 24 6 -4.5956 -8.8032 -0.0134 25 6 -3.8350 -9.9731 -0.0177 26 6 -2.4557 -9.8998 -0.0156 27 8 -4.6826 -11.0435 -0.0239 28 6 -5.9600 -10.5235 0.3894 29 8 -5.9162 -9.1432 -0.0171 30 1 -0.4850 0.8400 0.0004 31 1 0.6240 -2.5568 -0.8903 32 1 0.6247 -2.5571 0.8896 33 1 2.8719 -3.6044 0.8894 34 1 2.8719 -3.6044 -0.8905 35 1 4.1694 -5.0284 0.0098 36 1 5.4515 -7.1579 0.0007 37 1 4.2405 -9.2971 -0.0086 38 1 -0.2754 -6.5555 0.0022 39 1 -2.1066 -6.5206 0.0000 40 1 -4.5583 -6.6613 -0.0133 41 1 -1.8661 -10.8046 -0.0194 42 1 -6.0731 -10.6008 1.4709 43 1 -6.7694 -11.0470 -0.1195 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069517564.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:10 Heat of formation + Delta-G solvation = -55.141775 kcal Electronic energy + Delta-G solvation = -29893.563332 eV Core-core repulsion = 25485.170485 eV Total energy + Delta-G solvation = -4408.392847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 356.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.54497 -40.98320 -39.59989 -37.93513 -37.41247 -36.67903 -34.96558 -33.49874 -31.78401 -31.11501 -30.95143 -30.24916 -28.96391 -26.37158 -25.46776 -24.64008 -23.40996 -23.16792 -22.68200 -21.22576 -20.55947 -18.93350 -18.38090 -18.14830 -17.74403 -17.56067 -16.70702 -16.39711 -16.16397 -15.84868 -15.60394 -15.08823 -15.02987 -14.82363 -14.61119 -14.45133 -14.22107 -14.00288 -13.83345 -13.63589 -13.38909 -13.24887 -13.03528 -12.83903 -12.42539 -12.05647 -11.96109 -11.53762 -11.28762 -11.09161 -11.01081 -10.76597 -10.70255 -10.40259 -10.07557 -9.80336 -9.43951 -9.29183 -9.24545 -9.11503 -8.54127 -8.49866 -7.70387 -6.19985 -4.24827 0.33374 0.85737 1.22804 1.41893 2.25817 2.64245 2.75438 3.11191 3.21368 3.27549 3.29628 3.45407 3.49057 4.00231 4.05735 4.26761 4.27305 4.32289 4.49781 4.59123 4.70116 4.76622 4.83597 4.92448 5.05210 5.14166 5.17119 5.23312 5.43670 5.60340 5.68591 5.77768 5.82075 5.85701 5.87475 5.93425 6.02704 6.16002 6.29888 6.51121 6.58649 6.69879 7.17418 7.31318 7.50048 7.60711 7.82084 7.98863 8.12208 8.27254 8.80292 9.40261 10.91416 Molecular weight = 356.13amu Principal moments of inertia in cm(-1) A = 0.008938 B = 0.002437 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.089985 B =11486.588978 C =14585.776488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.069 3.931 13 C -0.147 4.147 14 C -0.158 4.158 15 C 0.076 3.924 16 N -0.443 5.443 17 C 0.328 3.672 18 N -0.646 5.646 19 C 0.556 3.444 20 O -0.473 6.473 21 C -0.124 4.124 22 C -0.069 4.069 23 C -0.104 4.104 24 C 0.059 3.941 25 C 0.020 3.980 26 C -0.040 4.040 27 O -0.306 6.306 28 C 0.212 3.788 29 O -0.305 6.305 30 H 0.264 0.736 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.146 0.854 36 H 0.135 0.865 37 H 0.157 0.843 38 H 0.424 0.576 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.087 0.913 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 -19.024 1.058 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.008 4.008 11 O -0.229 6.229 12 C 0.018 3.982 13 C -0.174 4.174 14 C -0.179 4.179 15 C -0.081 4.081 16 N -0.158 5.158 17 C 0.095 3.905 18 N -0.294 5.294 19 C 0.342 3.658 20 O -0.344 6.344 21 C -0.128 4.128 22 C -0.088 4.088 23 C -0.123 4.123 24 C 0.013 3.987 25 C -0.024 4.024 26 C -0.059 4.059 27 O -0.222 6.222 28 C 0.101 3.899 29 O -0.221 6.221 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.163 0.837 36 H 0.153 0.847 37 H 0.175 0.825 38 H 0.263 0.737 39 H 0.166 0.834 40 H 0.165 0.835 41 H 0.168 0.832 42 H 0.104 0.896 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.364 -20.539 0.951 21.524 hybrid contribution 0.597 2.214 0.055 2.294 sum -5.768 -18.325 1.006 19.238 Atomic orbital electron populations 1.69959 1.06089 1.27099 1.49504 1.24975 0.94917 0.99404 0.94782 0.86488 0.79757 0.82887 0.78279 1.20457 1.21013 1.19750 1.20941 0.93068 0.90118 1.52531 0.92340 1.19128 0.94136 0.88895 0.98899 1.23409 0.97279 0.80227 0.99898 1.86091 1.36307 1.12933 1.87569 1.19575 0.91162 0.87034 1.00445 1.21616 0.92198 1.00408 1.03184 1.21909 1.01251 0.92518 1.02237 1.22417 0.88733 0.97943 0.99021 1.67618 1.07940 1.26871 1.13369 1.17718 0.84496 0.87050 1.01201 1.43263 1.03987 1.10135 1.72011 1.18033 0.86875 0.83429 0.77452 1.90883 1.65222 1.33776 1.44536 1.19526 0.92834 0.93152 1.07263 1.21223 0.92604 0.98353 0.96632 1.20042 0.93915 0.94802 1.03503 1.20115 0.82529 0.95025 1.00989 1.19553 0.92309 0.84916 1.05598 1.19986 0.89444 0.98639 0.97825 1.87406 1.19483 1.30365 1.84959 1.25691 0.86658 0.77175 1.00424 1.87358 1.21830 1.28438 1.84457 0.92629 0.95315 0.95323 0.92885 0.92894 0.83656 0.84720 0.82529 0.73714 0.83447 0.83533 0.83200 0.89576 0.84906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.12 13.29 55.43 0.74 -24.38 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.53 -13.84 9.11 -34.44 -0.31 -14.15 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.64 5.34 -27.89 -0.15 0.49 16 10 C 0.07 1.25 4.70 37.15 0.17 1.43 16 11 O -0.32 -5.58 9.38 -19.69 -0.18 -5.77 16 12 C 0.07 1.11 6.72 -38.91 -0.26 0.85 16 13 C -0.15 -2.07 9.14 -39.18 -0.36 -2.42 16 14 C -0.16 -1.89 10.10 -39.44 -0.40 -2.29 16 15 C 0.08 0.99 11.17 -17.56 -0.20 0.80 16 16 N -0.44 -7.24 7.87 -12.24 -0.10 -7.33 16 17 C 0.33 5.30 7.44 -154.50 -1.15 4.15 16 18 N -0.65 -9.26 5.34 -12.23 -0.07 -9.32 16 19 C 0.56 8.05 7.73 -12.45 -0.10 7.95 16 20 O -0.47 -8.23 14.59 5.29 0.08 -8.16 16 21 C -0.12 -1.47 5.87 -104.98 -0.62 -2.09 16 22 C -0.07 -0.69 9.53 -39.20 -0.37 -1.06 16 23 C -0.10 -1.00 10.04 -39.53 -0.40 -1.40 16 24 C 0.06 0.63 7.16 -38.86 -0.28 0.35 16 25 C 0.02 0.23 7.14 -39.14 -0.28 -0.05 16 26 C -0.04 -0.46 9.60 -39.06 -0.38 -0.84 16 27 O -0.31 -3.15 11.41 -45.81 -0.52 -3.67 16 28 C 0.21 1.48 8.88 101.05 0.90 2.38 16 29 O -0.31 -3.01 11.39 -45.24 -0.52 -3.53 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.96 7.69 -51.93 -0.40 0.56 16 34 H 0.05 0.96 7.71 -51.93 -0.40 0.56 16 35 H 0.15 1.88 6.44 -52.49 -0.34 1.54 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.16 1.59 8.06 -52.48 -0.42 1.17 16 38 H 0.42 5.28 6.06 -40.82 -0.25 5.03 16 39 H 0.15 1.23 6.39 -52.48 -0.34 0.89 16 40 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.15 1.73 7.64 -52.49 -0.40 1.33 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.13 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 373.99 15.07 5.64 5.64 Total: -1.00 -33.18 373.99 -8.85 -42.03 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.62 Total: 3.47 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -4.27 Total: -4.35 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.57 Total: -41.04 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -1.15 Total: -21.12 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.18 -8.85 -42.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069517564.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.113 kcal (2) G-P(sol) polarization free energy of solvation -33.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds