Wall clock time and date at job start Tue Mar 31 2020 05:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86794 * 120.00170 * 2 1 4 4 H 1.48499 * 109.47257 * 270.00456 * 3 2 1 5 5 H 1.48503 * 109.47212 * 30.00254 * 3 2 1 6 6 H 1.48498 * 109.47216 * 150.00174 * 3 2 1 7 7 C 1.37880 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00199 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99990 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47312 * 180.02562 * 9 7 2 11 11 O 1.42899 * 109.47534 * 180.02562 * 10 9 7 12 12 C 1.35983 * 117.00354 * 180.02562 * 11 10 9 13 13 C 1.38787 * 120.49527 * 0.25209 * 12 11 10 14 14 C 1.38786 * 118.44583 * 180.24565 * 13 12 11 15 15 C 1.38077 * 119.36062 * 359.74678 * 14 13 12 16 16 N 1.31955 * 120.95712 * 359.97438 * 15 14 13 17 17 C 1.32297 * 121.68886 * 0.02562 * 16 15 14 18 18 N 1.39487 * 119.72883 * 179.97438 * 17 16 15 19 19 C 1.34778 * 120.00137 * 359.97438 * 18 17 16 20 20 O 1.21585 * 120.00003 * 0.02562 * 19 18 17 21 21 C 1.47572 * 119.99907 * 180.02562 * 19 18 17 22 22 C 1.39722 * 120.08616 * 0.02562 * 21 19 18 23 23 C 1.37756 * 120.00272 * 179.75251 * 22 21 19 24 24 C 1.38862 * 120.22215 * 0.44452 * 23 22 21 25 25 C 1.39542 * 120.05647 * 359.55718 * 24 23 22 26 26 C 1.38126 * 119.98494 * 0.22281 * 25 24 23 27 27 O 1.36538 * 108.59744 * 180.23541 * 25 24 23 28 28 C 1.43977 * 105.44817 * 342.69639 * 27 25 24 29 29 O 1.36365 * 131.35362 * 179.86623 * 24 23 22 30 30 H 0.96999 * 119.99972 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.47385 * 60.00062 * 9 7 2 32 32 H 1.08999 * 109.47084 * 300.00413 * 9 7 2 33 33 H 1.09003 * 109.47151 * 59.99544 * 10 9 7 34 34 H 1.08999 * 109.47077 * 300.00042 * 10 9 7 35 35 H 1.08001 * 120.77601 * 359.97438 * 13 12 11 36 36 H 1.08001 * 120.31933 * 179.72005 * 14 13 12 37 37 H 1.08004 * 119.52209 * 180.02562 * 15 14 13 38 38 H 0.97006 * 119.99982 * 179.97438 * 18 17 16 39 39 H 1.08004 * 119.99516 * 359.97438 * 22 21 19 40 40 H 1.08000 * 119.89168 * 180.30790 * 23 22 21 41 41 H 1.07995 * 120.04820 * 180.02562 * 26 25 24 42 42 H 1.09005 * 110.56269 * 268.61330 * 28 27 25 43 43 H 1.09000 * 110.56746 * 145.75573 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 8 1.5307 -4.8997 -0.0011 12 6 2.2713 -6.0401 -0.0007 13 6 3.6578 -5.9796 0.0056 14 6 4.3716 -7.1698 0.0006 15 6 3.6877 -8.3693 -0.0051 16 7 2.3684 -8.3985 -0.0053 17 6 1.6488 -7.2884 -0.0006 18 7 0.2561 -7.3669 -0.0016 19 6 -0.3510 -8.5702 -0.0078 20 8 0.3152 -9.5872 -0.0120 21 6 -1.8244 -8.6532 -0.0094 22 6 -2.5917 -7.4855 -0.0050 23 6 -3.9670 -7.5650 -0.0116 24 6 -4.5956 -8.8032 -0.0134 25 6 -3.8350 -9.9731 -0.0177 26 6 -2.4557 -9.8998 -0.0156 27 8 -4.6826 -11.0435 -0.0239 28 6 -5.9600 -10.5235 0.3894 29 8 -5.9162 -9.1432 -0.0171 30 1 -0.4850 0.8400 0.0004 31 1 0.6240 -2.5568 -0.8903 32 1 0.6247 -2.5571 0.8896 33 1 2.8719 -3.6044 0.8894 34 1 2.8719 -3.6044 -0.8905 35 1 4.1694 -5.0284 0.0098 36 1 5.4515 -7.1579 0.0007 37 1 4.2405 -9.2971 -0.0086 38 1 -0.2754 -6.5555 0.0022 39 1 -2.1066 -6.5206 0.0000 40 1 -4.5583 -6.6613 -0.0133 41 1 -1.8661 -10.8046 -0.0194 42 1 -6.0731 -10.6008 1.4709 43 1 -6.7694 -11.0470 -0.1195 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069517564.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:09 Heat of formation + Delta-G solvation = -75.545037 kcal Electronic energy + Delta-G solvation = -29894.448084 eV Core-core repulsion = 25485.170485 eV Total energy + Delta-G solvation = -4409.277599 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 356.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.29741 -42.11101 -40.70522 -39.16814 -38.36514 -37.43157 -36.11403 -35.42549 -32.93711 -32.44063 -31.89890 -31.45455 -30.10485 -27.15377 -27.03018 -25.68281 -24.57303 -24.15793 -23.70776 -22.72204 -21.72252 -20.00757 -19.35908 -19.10703 -18.82646 -18.42392 -18.02114 -17.64851 -17.30112 -17.16399 -16.68883 -16.42638 -16.28599 -16.03746 -15.59586 -15.39319 -15.17473 -15.01455 -14.85364 -14.80203 -14.34576 -14.21513 -14.11372 -13.98396 -13.82190 -13.58632 -13.27800 -12.79026 -12.73351 -12.42675 -12.36272 -12.03782 -11.86564 -11.69018 -11.62515 -11.51773 -11.37473 -10.58109 -10.41144 -10.24938 -10.11624 -9.31450 -8.85760 -8.23369 -6.35131 -0.57694 0.02519 0.16913 0.30243 1.44432 1.44849 1.44937 1.55636 1.64089 1.83242 2.12081 2.41887 2.46066 2.51688 2.90490 3.12209 3.23949 3.27946 3.59563 3.73573 3.85682 3.87252 3.89928 3.99568 4.02292 4.13689 4.21142 4.33153 4.36430 4.40227 4.48097 4.77971 4.78883 4.83573 4.96561 4.98612 5.02220 5.09068 5.17120 5.24448 5.34395 5.54600 5.54762 5.76037 5.92823 6.10599 6.12080 6.33845 6.79714 6.86224 7.18901 7.34658 8.89074 Molecular weight = 356.13amu Principal moments of inertia in cm(-1) A = 0.008938 B = 0.002437 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.089985 B =11486.588978 C =14585.776488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.543 4.543 8 H 0.070 0.930 9 C 0.030 3.970 10 C 0.083 3.917 11 O -0.327 6.327 12 C 0.046 3.954 13 C -0.148 4.148 14 C -0.142 4.142 15 C 0.074 3.926 16 N -0.473 5.473 17 C 0.309 3.691 18 N -0.644 5.644 19 C 0.557 3.443 20 O -0.510 6.510 21 C -0.135 4.135 22 C -0.062 4.062 23 C -0.103 4.103 24 C 0.058 3.942 25 C 0.013 3.987 26 C -0.047 4.047 27 O -0.321 6.321 28 C 0.203 3.797 29 O -0.314 6.314 30 H 0.266 0.734 31 H 0.003 0.997 32 H 0.004 0.996 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.158 0.842 36 H 0.176 0.824 37 H 0.187 0.813 38 H 0.429 0.571 39 H 0.162 0.838 40 H 0.169 0.831 41 H 0.143 0.857 42 H 0.109 0.891 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.596 -18.811 1.190 19.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.581 4.581 8 H 0.088 0.912 9 C -0.008 4.008 10 C 0.009 3.991 11 O -0.241 6.241 12 C -0.005 4.005 13 C -0.175 4.175 14 C -0.163 4.163 15 C -0.083 4.083 16 N -0.189 5.189 17 C 0.077 3.923 18 N -0.292 5.292 19 C 0.345 3.655 20 O -0.383 6.383 21 C -0.139 4.139 22 C -0.081 4.081 23 C -0.121 4.121 24 C 0.013 3.987 25 C -0.032 4.032 26 C -0.067 4.067 27 O -0.237 6.237 28 C 0.093 3.907 29 O -0.230 6.230 30 H 0.074 0.926 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.176 0.824 36 H 0.194 0.806 37 H 0.204 0.796 38 H 0.269 0.731 39 H 0.179 0.821 40 H 0.186 0.814 41 H 0.161 0.839 42 H 0.126 0.874 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.183 -20.332 1.086 21.010 hybrid contribution 0.204 2.004 0.024 2.015 sum -4.979 -18.328 1.109 19.024 Atomic orbital electron populations 1.70090 1.07795 1.28052 1.50759 1.25919 0.95748 1.03290 0.94425 0.85405 0.78707 0.78210 0.78493 1.19832 1.20990 1.18432 1.21400 0.93855 0.91098 1.51775 0.91175 1.18948 0.94535 0.90837 0.96454 1.22970 0.95659 0.79558 1.00942 1.86018 1.36618 1.12989 1.88459 1.19704 0.92149 0.86112 1.02530 1.21918 0.91393 1.01897 1.02265 1.22299 1.03129 0.91040 0.99784 1.23063 0.87991 0.99858 0.97409 1.67669 1.09598 1.27202 1.14399 1.17910 0.85120 0.87217 1.02009 1.43303 1.03844 1.10392 1.71691 1.18378 0.87767 0.82922 0.76418 1.90843 1.66214 1.34764 1.46494 1.19350 0.91439 0.94017 1.09055 1.21367 0.92844 0.98238 0.95608 1.20287 0.93770 0.95408 1.02656 1.20307 0.82988 0.95120 1.00315 1.19586 0.92218 0.85628 1.05727 1.19947 0.89916 0.98397 0.98424 1.87382 1.20545 1.30596 1.85206 1.26249 0.86117 0.76024 1.02348 1.87342 1.21188 1.29957 1.84513 0.92565 0.97825 0.97789 0.91741 0.91778 0.82401 0.80624 0.79621 0.73095 0.82107 0.81377 0.83902 0.87368 0.81599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.28 13.29 21.45 0.28 -52.99 16 2 C 0.01 0.27 5.46 84.65 0.46 0.73 16 3 Si 0.97 41.38 29.54 68.60 2.03 43.40 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.54 -28.38 9.11 25.60 0.23 -28.15 16 8 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.44 5.34 29.85 0.16 1.60 16 10 C 0.08 3.12 4.70 71.98 0.34 3.46 16 11 O -0.33 -11.64 9.38 -93.36 -0.88 -12.52 16 12 C 0.05 1.45 6.72 22.70 0.15 1.60 16 13 C -0.15 -3.85 9.14 22.53 0.21 -3.65 16 14 C -0.14 -2.96 10.10 22.36 0.23 -2.74 16 15 C 0.07 1.79 11.17 84.64 0.95 2.74 16 16 N -0.47 -15.36 7.87 -192.63 -1.52 -16.87 16 17 C 0.31 10.09 7.44 133.01 0.99 11.08 16 18 N -0.64 -19.14 5.34 -310.87 -1.66 -20.80 16 19 C 0.56 16.87 7.73 86.71 0.67 17.54 16 20 O -0.51 -18.54 14.59 -3.98 -0.06 -18.60 16 21 C -0.14 -3.33 5.87 -20.09 -0.12 -3.45 16 22 C -0.06 -1.24 9.53 22.51 0.21 -1.02 16 23 C -0.10 -1.90 10.04 22.31 0.22 -1.68 16 24 C 0.06 1.21 7.16 22.73 0.16 1.37 16 25 C 0.01 0.29 7.14 22.56 0.16 0.45 16 26 C -0.05 -1.15 9.60 22.61 0.22 -0.94 16 27 O -0.32 -6.45 11.41 -76.50 -0.87 -7.33 16 28 C 0.20 2.50 8.88 113.37 1.01 3.51 16 29 O -0.31 -5.79 11.39 -74.47 -0.85 -6.63 16 30 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 31 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 33 H 0.06 2.26 7.69 -2.39 -0.02 2.24 16 34 H 0.06 2.25 7.71 -2.39 -0.02 2.23 16 35 H 0.16 3.65 6.44 -2.91 -0.02 3.64 16 36 H 0.18 2.21 8.06 -2.91 -0.02 2.18 16 37 H 0.19 3.25 8.06 -2.91 -0.02 3.23 16 38 H 0.43 11.18 6.06 -92.70 -0.56 10.62 16 39 H 0.16 2.70 6.39 -2.91 -0.02 2.68 16 40 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 41 H 0.14 3.58 7.64 -2.91 -0.02 3.56 16 42 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.17 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -73.26 373.99 3.25 -70.01 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.52 Total: 19.88 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 6.25 Total: 2.46 kcal Atomic # 7 Polarization: -87.77 SS G_CDS: -2.89 Total: -90.66 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -2.66 Total: -45.08 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Total: -73.26 3.25 -70.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069517564.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.536 kcal (2) G-P(sol) polarization free energy of solvation -73.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds