Wall clock time and date at job start Tue Mar 31 2020 05:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47198 * 2 1 4 4 O 1.42892 * 109.46973 * 239.99243 * 2 1 3 5 5 C 1.35495 * 117.00303 * 210.00318 * 4 2 1 6 6 C 1.39166 * 119.53051 * 179.73437 * 5 4 2 7 7 C 1.37955 * 119.26601 * 179.79459 * 6 5 4 8 8 C 1.40282 * 118.35739 * 0.46531 * 7 6 5 9 9 C 1.47612 * 120.50196 * 179.77340 * 8 7 6 10 10 O 1.21589 * 120.00024 * 311.95387 * 9 8 7 11 11 N 1.34782 * 120.00377 * 131.94784 * 9 8 7 12 12 C 1.46498 * 119.99572 * 4.95670 * 11 9 8 13 13 C 1.50701 * 109.46698 * 95.81398 * 12 11 9 14 14 H 1.07995 * 120.00517 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99581 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00567 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99613 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46960 * 60.00400 * 17 15 13 19 19 H 1.48503 * 109.47056 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47516 * 300.00274 * 17 15 13 21 21 C 1.46495 * 120.00285 * 184.96156 * 11 9 8 22 22 C 1.50700 * 109.47467 * 89.99753 * 21 11 9 23 23 C 1.38221 * 119.61561 * 94.99850 * 22 21 11 24 24 C 1.38626 * 119.16319 * 179.97438 * 23 22 21 25 25 C 1.38673 * 118.41802 * 0.02562 * 24 23 22 26 26 C 1.38177 * 119.16292 * 359.97438 * 25 24 23 27 27 N 1.31858 * 119.61894 * 274.72794 * 22 21 11 28 28 C 1.39523 * 119.00378 * 359.75097 * 8 7 6 29 29 N 1.31668 * 120.62734 * 0.02562 * 28 8 7 30 30 H 1.09007 * 109.47161 * 59.99787 * 1 2 3 31 31 H 1.08999 * 109.47566 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47271 * 300.00493 * 1 2 3 33 33 H 1.09005 * 109.46666 * 120.00048 * 2 1 3 34 34 H 1.09009 * 109.47253 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47351 * 299.99628 * 3 2 1 36 36 H 1.09000 * 109.47611 * 59.99971 * 3 2 1 37 37 H 1.08008 * 120.36780 * 359.97438 * 6 5 4 38 38 H 1.07997 * 120.82046 * 180.22139 * 7 6 5 39 39 H 1.09002 * 109.47246 * 215.81381 * 12 11 9 40 40 H 1.08997 * 109.47661 * 335.81426 * 12 11 9 41 41 H 0.96997 * 119.99954 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.47028 * 210.00194 * 21 11 9 43 43 H 1.09004 * 109.46666 * 329.99819 * 21 11 9 44 44 H 1.08005 * 120.42211 * 359.96008 * 23 22 21 45 45 H 1.08004 * 120.79445 * 180.02562 * 24 23 22 46 46 H 1.08001 * 120.42193 * 179.97438 * 25 24 23 47 47 H 1.08004 * 119.61984 * 180.02562 * 26 25 24 48 48 H 1.07997 * 119.68711 * 179.97438 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6738 -1.1666 5 6 3.1970 -1.3123 -1.0652 6 6 3.7079 -1.9903 -2.1680 7 6 4.9227 -2.6350 -2.0600 8 6 5.5945 -2.5886 -0.8294 9 6 6.8949 -3.2662 -0.6597 10 8 7.0352 -4.4149 -1.0326 11 7 7.9269 -2.6114 -0.0914 12 6 7.7291 -1.2670 0.4560 13 6 7.4646 -1.3615 1.9365 14 1 7.4460 -2.3263 2.4214 15 6 7.2472 -0.2159 2.6724 16 7 7.2702 0.9591 2.0823 17 14 6.9185 -0.3331 4.5076 18 1 8.0774 -0.9756 5.1780 19 1 6.7181 1.0297 5.0626 20 1 5.6982 -1.1464 4.7411 21 6 9.2464 -3.2441 -0.0212 22 6 10.0357 -2.8983 -1.2575 23 6 10.9100 -1.8280 -1.2325 24 6 11.6319 -1.5186 -2.3749 25 6 11.4460 -2.3005 -3.5050 26 6 10.5543 -3.3549 -3.4550 27 7 9.8884 -3.6235 -2.3488 28 6 5.0153 -1.8921 0.2318 29 7 3.8554 -1.2869 0.0833 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 3.1607 -2.0090 -3.0990 38 1 5.3442 -3.1656 -2.9009 39 1 8.6244 -0.6694 0.2842 40 1 6.8781 -0.7960 -0.0359 41 1 7.1169 1.7649 2.5999 42 1 9.7758 -2.8834 0.8607 43 1 9.1276 -4.3257 0.0433 44 1 11.0292 -1.2401 -0.3344 45 1 12.3225 -0.6883 -2.3846 46 1 11.9913 -2.0881 -4.4127 47 1 10.4042 -3.9690 -4.3308 48 1 5.5227 -1.8497 1.1842 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069536852.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:53 Heat of formation + Delta-G solvation = 1.710798 kcal Electronic energy + Delta-G solvation = -31782.595442 eV Core-core repulsion = 27610.219664 eV Total energy + Delta-G solvation = -4172.375778 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 355.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.48884 -39.98132 -38.92884 -37.46078 -35.21975 -33.21366 -32.90212 -32.22204 -32.07207 -31.52910 -29.84125 -27.66896 -27.17950 -26.27850 -23.76491 -23.47803 -23.35688 -22.77499 -21.80434 -20.87915 -19.03014 -18.18629 -16.99143 -16.88184 -16.44062 -16.23456 -15.84306 -15.52030 -15.40460 -15.22365 -14.61443 -14.41459 -14.30653 -14.14998 -13.65245 -13.46869 -13.29858 -13.04288 -12.85164 -12.74593 -12.59225 -12.33935 -12.25668 -12.18089 -12.10912 -11.75703 -11.59641 -11.43315 -11.28340 -11.01423 -10.85193 -10.75250 -10.50970 -10.25598 -9.91245 -9.67996 -9.52571 -9.43417 -9.16041 -8.98987 -8.77255 -8.62806 -8.00699 -7.81684 -6.28919 -4.38845 1.27726 1.39898 1.50123 1.67880 3.19989 3.24231 3.25563 3.27934 3.41102 3.72216 4.20380 4.22907 4.35192 4.59105 4.73800 4.96327 4.97172 5.00584 5.05015 5.08171 5.22579 5.24068 5.32816 5.37013 5.40412 5.42997 5.55174 5.61076 5.76509 5.77535 5.82369 5.88713 5.95374 5.99508 6.08668 6.20300 6.23315 6.32148 6.35532 6.38305 6.40877 6.61267 6.64621 6.90389 6.95178 7.11404 7.43396 7.57623 7.64968 7.92468 8.21373 8.30569 8.32448 8.68153 8.94817 9.29872 10.76215 Molecular weight = 355.17amu Principal moments of inertia in cm(-1) A = 0.008541 B = 0.003854 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3277.397575 B = 7263.141820 C = 9342.543568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.080 3.920 3 C -0.168 4.168 4 O -0.305 6.305 5 C 0.330 3.670 6 C -0.213 4.213 7 C 0.000 4.000 8 C -0.218 4.218 9 C 0.570 3.430 10 O -0.547 6.547 11 N -0.586 5.586 12 C 0.232 3.768 13 C -0.552 4.552 14 H 0.067 0.933 15 C 0.075 3.925 16 N -0.877 5.877 17 Si 0.894 3.106 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.168 3.832 22 C 0.119 3.881 23 C -0.154 4.154 24 C -0.081 4.081 25 C -0.182 4.182 26 C 0.092 3.908 27 N -0.461 5.461 28 C 0.194 3.806 29 N -0.540 5.540 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.034 0.966 40 H 0.043 0.957 41 H 0.268 0.732 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.138 0.862 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.150 0.850 48 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.409 -0.583 -7.180 7.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.023 3.977 3 C -0.226 4.226 4 O -0.213 6.213 5 C 0.151 3.849 6 C -0.234 4.234 7 C -0.025 4.025 8 C -0.223 4.223 9 C 0.357 3.643 10 O -0.426 6.426 11 N -0.317 5.317 12 C 0.112 3.888 13 C -0.590 4.590 14 H 0.085 0.915 15 C -0.131 4.131 16 N -0.513 5.513 17 Si 0.721 3.279 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.197 1.197 21 C 0.044 3.956 22 C -0.020 4.020 23 C -0.175 4.175 24 C -0.107 4.107 25 C -0.202 4.202 26 C -0.066 4.066 27 N -0.170 5.170 28 C 0.038 3.962 29 N -0.263 5.263 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.156 0.844 45 H 0.149 0.851 46 H 0.147 0.853 47 H 0.167 0.833 48 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.512 -1.172 -6.833 7.374 hybrid contribution 0.928 0.781 0.340 1.260 sum -1.584 -0.391 -6.493 6.695 Atomic orbital electron populations 1.21895 0.93315 1.02676 1.02658 1.22322 0.93918 0.93017 0.88395 1.22202 1.02987 0.95381 1.01993 1.86197 1.32024 1.64318 1.38723 1.20083 0.85731 0.88879 0.90192 1.20785 0.98437 1.05155 0.99011 1.21287 0.91822 0.92980 0.96455 1.20786 0.98600 1.06257 0.96668 1.17932 0.83407 0.85553 0.77387 1.90727 1.83709 1.16995 1.51175 1.48032 1.07071 1.19542 1.57021 1.19626 0.98463 0.76984 0.93693 1.21430 1.51068 0.93542 0.92973 0.91525 1.24943 0.94333 0.95024 0.98795 1.69911 1.47015 0.97842 1.36574 0.86606 0.79243 0.77436 0.84621 1.19992 1.21093 1.19703 1.20133 0.83129 0.99926 0.92388 1.21895 0.93781 0.91396 0.94889 1.22128 0.97347 0.98171 0.99837 1.21552 0.97934 0.98431 0.92769 1.22088 1.01034 0.97726 0.99318 1.22754 0.92441 0.95296 0.96099 1.67636 1.21593 1.28728 0.99019 1.24096 0.87209 0.84327 1.00603 1.67470 1.11085 1.24078 1.23648 0.91909 0.92031 0.90686 0.88979 0.91285 0.92439 0.91317 0.84449 0.84301 0.94749 0.93950 0.92233 0.88363 0.88889 0.84384 0.85133 0.85341 0.83270 0.78201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.56 37.16 0.36 -1.24 16 2 C 0.08 1.14 3.10 -26.74 -0.08 1.06 16 3 C -0.17 -2.33 9.53 37.15 0.35 -1.98 16 4 O -0.30 -4.96 9.75 -18.18 -0.18 -5.14 16 5 C 0.33 5.94 7.46 -16.96 -0.13 5.81 16 6 C -0.21 -3.51 10.02 -39.34 -0.39 -3.90 16 7 C 0.00 0.01 9.86 -38.92 -0.38 -0.38 16 8 C -0.22 -4.42 4.97 -104.83 -0.52 -4.94 16 9 C 0.57 12.27 7.26 -12.43 -0.09 12.18 16 10 O -0.55 -12.70 16.58 5.29 0.09 -12.61 16 11 N -0.59 -12.18 2.44 -177.64 -0.43 -12.61 16 12 C 0.23 5.24 4.67 -5.19 -0.02 5.22 16 13 C -0.55 -13.16 6.86 -34.44 -0.24 -13.39 16 14 H 0.07 1.60 7.81 -52.49 -0.41 1.19 16 15 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 16 N -0.88 -22.72 13.29 55.43 0.74 -21.98 16 17 Si 0.89 19.43 29.54 -169.99 -5.02 14.41 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 21 C 0.17 3.11 5.77 -5.20 -0.03 3.08 16 22 C 0.12 2.08 6.36 -82.59 -0.53 1.55 16 23 C -0.15 -2.34 9.72 -39.44 -0.38 -2.72 16 24 C -0.08 -1.03 10.18 -39.28 -0.40 -1.43 16 25 C -0.18 -2.21 10.11 -39.44 -0.40 -2.60 16 26 C 0.09 1.30 11.18 -17.55 -0.20 1.10 16 27 N -0.46 -8.15 10.27 -9.48 -0.10 -8.25 16 28 C 0.19 4.06 8.69 -17.14 -0.15 3.91 16 29 N -0.54 -10.77 8.61 -12.97 -0.11 -10.88 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.09 1.46 6.97 -51.93 -0.36 1.10 16 34 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.14 1.86 8.06 -52.48 -0.42 1.43 16 38 H 0.14 2.22 8.06 -52.49 -0.42 1.80 16 39 H 0.03 0.81 8.11 -51.93 -0.42 0.39 16 40 H 0.04 1.04 5.39 -51.93 -0.28 0.76 16 41 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 42 H 0.10 1.67 7.97 -51.93 -0.41 1.26 16 43 H 0.09 1.77 7.36 -51.93 -0.38 1.39 16 44 H 0.14 1.98 8.06 -52.48 -0.42 1.55 16 45 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 46 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 47 H 0.15 1.70 8.06 -52.48 -0.42 1.27 16 48 H 0.20 4.55 4.74 -52.49 -0.25 4.31 16 LS Contribution 406.44 15.07 6.12 6.12 Total: -1.00 -29.28 406.44 -8.95 -38.23 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -6.73 Total: 9.64 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -3.33 Total: 3.06 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.09 Total: -53.72 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.09 Total: -17.75 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.28 -8.95 -38.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069536852.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.943 kcal (2) G-P(sol) polarization free energy of solvation -29.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds