Wall clock time and date at job start Tue Mar 31 2020 05:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38262 * 119.94615 * 2 1 4 4 C 1.38146 * 120.05794 * 179.97438 * 3 2 1 5 5 C 1.38731 * 119.94062 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05148 * 180.02562 * 5 4 3 7 7 C 1.42904 * 116.99788 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46972 * 180.02562 * 7 6 5 9 9 O 1.21278 * 120.00056 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99823 * 180.02562 * 8 7 6 11 11 C 1.39581 * 119.99990 * 179.97438 * 10 8 7 12 12 N 1.32276 * 119.72745 * 0.26696 * 11 10 8 13 13 C 1.31949 * 121.69079 * 180.30946 * 12 11 10 14 14 C 1.38093 * 120.95747 * 359.70619 * 13 12 11 15 15 C 1.38775 * 119.35013 * 359.97438 * 14 13 12 16 16 C 1.38801 * 118.45054 * 359.97438 * 15 14 13 17 17 O 1.35973 * 120.50125 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99587 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47574 * 89.99780 * 24 22 20 26 26 H 1.48500 * 109.47346 * 209.99892 * 24 22 20 27 27 H 1.48499 * 109.47067 * 329.99541 * 24 22 20 28 28 C 1.38731 * 119.88938 * 0.27478 * 5 4 3 29 29 C 1.38146 * 119.94343 * 359.42388 * 28 5 4 30 30 H 1.09006 * 109.46750 * 90.00143 * 1 2 3 31 31 H 1.08993 * 109.47518 * 210.00631 * 1 2 3 32 32 H 1.09000 * 109.47038 * 330.00728 * 1 2 3 33 33 H 1.08006 * 119.97155 * 359.97004 * 3 2 1 34 34 H 1.07996 * 120.03062 * 179.97438 * 4 3 2 35 35 H 1.08995 * 109.47291 * 59.99920 * 7 6 5 36 36 H 1.09002 * 109.47170 * 299.99965 * 7 6 5 37 37 H 0.97000 * 120.00150 * 359.97438 * 10 8 7 38 38 H 1.08000 * 119.52722 * 179.72569 * 13 12 11 39 39 H 1.07998 * 120.32698 * 180.02562 * 14 13 12 40 40 H 1.08002 * 120.77560 * 180.02562 * 15 14 13 41 41 H 1.09000 * 109.47490 * 59.99648 * 18 17 16 42 42 H 1.09001 * 109.47232 * 299.99002 * 18 17 16 43 43 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 44 44 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 45 45 H 0.96992 * 120.00032 * 180.02562 * 23 22 20 46 46 H 1.07999 * 120.02562 * 179.72781 * 28 5 4 47 47 H 1.08002 * 119.97061 * 180.27578 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1980 0.0000 4 6 3.5786 1.2007 0.0005 5 6 4.2734 -0.0001 0.0016 6 8 5.6324 -0.0001 0.0027 7 6 6.2812 -1.2734 0.0043 8 6 7.7752 -1.0759 0.0059 9 8 8.2387 0.0448 0.0052 10 7 8.5961 -2.1447 0.0071 11 6 9.9799 -1.9619 0.0081 12 7 10.4797 -0.7372 0.0132 13 6 11.7811 -0.5196 0.0082 14 6 12.6770 -1.5704 0.0035 15 6 12.1978 -2.8728 0.0045 16 6 10.8242 -3.0720 0.0109 17 8 10.3093 -4.3305 0.0116 18 6 11.2422 -5.4130 0.0062 19 6 10.4823 -6.7411 0.0085 20 6 11.4660 -7.8827 0.0022 21 1 12.5270 -7.6812 -0.0035 22 6 11.0115 -9.1844 0.0025 23 7 9.7194 -9.4297 0.0088 24 14 12.2308 -10.5994 -0.0047 25 1 12.5602 -10.9763 1.3934 26 1 11.6324 -11.7650 -0.7036 27 1 13.4694 -10.1821 -0.7097 28 6 3.5785 -1.2008 -0.0036 29 6 2.1971 -1.1981 0.0021 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8898 0.5139 32 1 -0.3633 0.8901 0.5137 33 1 1.6558 2.1326 -0.0005 34 1 4.1173 2.1368 0.0001 35 1 5.9890 -1.8312 -0.8853 36 1 5.9876 -1.8296 0.8946 37 1 8.2254 -3.0411 0.0073 38 1 12.1511 0.4951 0.0081 39 1 13.7402 -1.3806 -0.0002 40 1 12.8779 -3.7119 0.0013 41 1 11.8726 -5.3540 0.8934 42 1 11.8646 -5.3519 -0.8866 43 1 9.8601 -6.8020 0.9014 44 1 9.8516 -6.8004 -0.8785 45 1 9.3997 -10.3455 0.0094 46 1 4.1172 -2.1369 -0.0072 47 1 1.6557 -2.1326 0.0026 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069744273.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:09 Heat of formation + Delta-G solvation = -42.482433 kcal Electronic energy + Delta-G solvation = -29501.155375 eV Core-core repulsion = 25229.144573 eV Total energy + Delta-G solvation = -4272.010802 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.03852 -40.44823 -39.23641 -37.94086 -37.59859 -34.90517 -33.51432 -32.39427 -31.74327 -31.34454 -30.78583 -29.66670 -28.36840 -26.37905 -25.46490 -23.86788 -23.09897 -22.74960 -21.60136 -21.06533 -20.35456 -18.67351 -18.48654 -17.66279 -17.10123 -16.65310 -16.29864 -16.13589 -15.75107 -15.62306 -15.59919 -14.90924 -14.76037 -14.62641 -14.50095 -14.20410 -13.98538 -13.95915 -13.77060 -13.48745 -13.03296 -12.86161 -12.44012 -12.42092 -12.37386 -12.07904 -11.97450 -11.82154 -11.16875 -11.14661 -11.10712 -11.02366 -10.79472 -10.71614 -10.29522 -10.09538 -9.81534 -9.45244 -9.29000 -9.28408 -9.10525 -8.55621 -8.32828 -7.74299 -6.21433 -4.26433 1.05488 1.12577 1.14026 1.39456 2.22129 2.53483 3.20238 3.26333 3.28506 3.31951 3.46199 3.46956 3.94304 4.18612 4.30880 4.50224 4.55510 4.63461 4.68494 4.74685 4.76929 4.90282 4.96674 5.03954 5.06264 5.15598 5.19354 5.25759 5.30664 5.41520 5.43388 5.61228 5.75594 5.81016 5.85525 5.99740 6.00000 6.07259 6.12538 6.25953 6.32599 6.46227 6.49246 6.56214 7.04650 7.15609 7.29474 7.48169 7.58843 7.80212 7.95450 8.10535 8.24218 8.78719 9.38733 10.89963 Molecular weight = 356.16amu Principal moments of inertia in cm(-1) A = 0.008784 B = 0.002001 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.838911 B =13991.937794 C =17147.707223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.128 4.128 3 C -0.081 4.081 4 C -0.145 4.145 5 C 0.125 3.875 6 O -0.289 6.289 7 C 0.043 3.957 8 C 0.506 3.494 9 O -0.456 6.456 10 N -0.648 5.648 11 C 0.328 3.672 12 N -0.444 5.444 13 C 0.076 3.924 14 C -0.157 4.157 15 C -0.148 4.148 16 C 0.070 3.930 17 O -0.316 6.316 18 C 0.066 3.934 19 C 0.027 3.973 20 C -0.529 4.529 21 H 0.059 0.941 22 C 0.061 3.939 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.273 1.273 28 C -0.206 4.206 29 C -0.079 4.079 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.426 0.574 38 H 0.158 0.842 39 H 0.135 0.865 40 H 0.146 0.854 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.264 0.736 46 H 0.131 0.869 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.227 18.370 -0.043 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.128 4.128 3 C -0.099 4.099 4 C -0.163 4.163 5 C 0.080 3.920 6 O -0.201 6.201 7 C -0.036 4.036 8 C 0.290 3.710 9 O -0.324 6.324 10 N -0.298 5.298 11 C 0.096 3.904 12 N -0.159 5.159 13 C -0.081 4.081 14 C -0.178 4.178 15 C -0.174 4.174 16 C 0.019 3.981 17 O -0.229 6.229 18 C -0.008 4.008 19 C -0.011 4.011 20 C -0.567 4.567 21 H 0.077 0.923 22 C -0.141 4.141 23 N -0.527 5.527 24 Si 0.727 3.273 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.225 4.225 29 C -0.097 4.097 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.263 0.737 38 H 0.175 0.825 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.074 0.926 46 H 0.149 0.851 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.757 19.863 -0.039 23.082 hybrid contribution 1.320 -2.452 -0.001 2.785 sum -10.437 17.411 -0.040 20.299 Atomic orbital electron populations 1.20721 0.91071 1.02648 1.02166 1.19856 0.96273 0.93081 1.03597 1.20849 0.92865 0.97829 0.98397 1.20444 0.93713 0.96429 1.05726 1.19056 0.81828 0.94429 0.96689 1.86138 1.16318 1.29087 1.88596 1.22429 0.90679 0.86051 1.04420 1.20104 0.87591 0.85202 0.78128 1.90841 1.76352 1.22656 1.42507 1.43197 1.03082 1.10847 1.72687 1.17702 0.83659 0.87750 1.01336 1.67601 1.15617 1.19308 1.13364 1.22421 0.87097 0.99570 0.98994 1.21918 1.01322 0.92452 1.02136 1.21624 0.93695 0.98922 1.03177 1.19563 0.92219 0.85949 1.00410 1.86096 1.38016 1.11188 1.87551 1.23414 0.92182 0.85317 0.99905 1.19129 0.96229 0.86814 0.98885 1.20943 0.92779 0.90416 1.52555 0.92319 1.24982 0.95360 0.99009 0.94771 1.69959 1.12731 1.20484 1.49488 0.86477 0.81033 0.81549 0.78281 1.20454 1.21006 1.19736 1.21311 0.95570 0.97075 1.08502 1.20851 0.93241 0.97813 0.97802 0.91414 0.91667 0.91701 0.85370 0.84970 0.88488 0.88494 0.73653 0.82503 0.84668 0.83624 0.92883 0.92875 0.95341 0.95337 0.92622 0.85141 0.85644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.01 36.01 0.36 -0.27 16 2 C -0.13 -1.05 5.88 -104.60 -0.62 -1.67 16 3 C -0.08 -0.69 9.69 -39.61 -0.38 -1.07 16 4 C -0.14 -1.47 9.99 -39.43 -0.39 -1.86 16 5 C 0.13 1.40 6.69 -39.22 -0.26 1.14 16 6 O -0.29 -3.71 9.67 -39.35 -0.38 -4.09 16 7 C 0.04 0.45 5.22 36.01 0.19 0.64 16 8 C 0.51 7.18 7.87 -10.99 -0.09 7.10 16 9 O -0.46 -8.32 14.75 -14.35 -0.21 -8.53 16 10 N -0.65 -9.01 5.39 -11.29 -0.06 -9.08 16 11 C 0.33 5.29 7.45 -154.43 -1.15 4.14 16 12 N -0.44 -7.36 7.88 -12.22 -0.10 -7.45 16 13 C 0.08 1.01 11.17 -17.55 -0.20 0.82 16 14 C -0.16 -1.90 10.10 -39.44 -0.40 -2.30 16 15 C -0.15 -2.08 9.14 -39.17 -0.36 -2.43 16 16 C 0.07 1.13 6.72 -38.91 -0.26 0.86 16 17 O -0.32 -5.57 9.39 -19.66 -0.18 -5.76 16 18 C 0.07 1.25 4.70 37.16 0.17 1.43 16 19 C 0.03 0.64 5.34 -27.88 -0.15 0.49 16 20 C -0.53 -13.89 9.11 -34.44 -0.31 -14.20 16 21 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 22 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 23 N -0.89 -25.17 13.29 55.43 0.74 -24.44 16 24 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 28 C -0.21 -1.95 9.04 -39.43 -0.36 -2.31 16 29 C -0.08 -0.68 9.69 -39.61 -0.38 -1.06 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 32 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 33 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.10 0.78 7.65 -51.93 -0.40 0.38 16 36 H 0.10 0.78 7.67 -51.93 -0.40 0.38 16 37 H 0.43 4.98 8.04 -40.82 -0.33 4.66 16 38 H 0.16 1.64 8.06 -52.49 -0.42 1.21 16 39 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.15 1.89 6.44 -52.49 -0.34 1.55 16 41 H 0.05 0.96 7.70 -51.93 -0.40 0.56 16 42 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 43 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.13 0.99 6.30 -52.49 -0.33 0.66 16 47 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 402.93 15.07 6.07 6.07 Total: -1.00 -33.74 402.93 -10.18 -43.93 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.36 Total: 2.94 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -4.68 Total: -8.99 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.58 Total: -40.97 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.78 Total: -18.38 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.74 -10.18 -43.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069744273.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.445 kcal (2) G-P(sol) polarization free energy of solvation -33.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds