Wall clock time and date at job start Tue Mar 31 2020 05:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47361 * 2 1 4 4 N 1.46493 * 109.47308 * 179.97438 * 3 2 1 5 5 C 1.37100 * 120.00533 * 264.74737 * 4 3 2 6 6 H 1.07994 * 120.00024 * 146.15994 * 5 4 3 7 7 C 1.38948 * 119.99327 * 326.16912 * 5 4 3 8 8 N 1.31410 * 120.00485 * 337.67865 * 7 5 4 9 9 Si 1.86803 * 119.99690 * 157.68357 * 7 5 4 10 10 H 1.48499 * 109.47459 * 59.99588 * 9 7 5 11 11 H 1.48500 * 109.47412 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47092 * 299.99657 * 9 7 5 13 13 C 1.34776 * 119.99899 * 84.75076 * 4 3 2 14 14 O 1.21298 * 120.00273 * 179.97438 * 13 4 3 15 15 C 1.50705 * 119.99989 * 359.97438 * 13 4 3 16 16 C 1.53005 * 109.47001 * 180.02562 * 15 13 4 17 17 N 1.46495 * 109.46764 * 180.02562 * 16 15 13 18 18 C 1.35812 * 119.62531 * 269.72709 * 17 16 15 19 19 C 1.35414 * 120.68395 * 179.72147 * 18 17 16 20 20 Br 1.89108 * 120.02874 * 180.28081 * 19 18 17 21 21 C 1.40245 * 119.93617 * 0.55014 * 19 18 17 22 22 C 1.36392 * 119.26492 * 359.73024 * 21 19 18 23 23 C 1.34658 * 119.62726 * 90.00260 * 17 16 15 24 24 O 1.22069 * 119.97361 * 0.02562 * 23 17 16 25 25 H 1.09009 * 109.46886 * 60.00353 * 1 2 3 26 26 H 1.08997 * 109.47417 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47350 * 300.00541 * 1 2 3 28 28 H 1.08998 * 109.47730 * 239.99719 * 2 1 3 29 29 H 1.09002 * 109.47225 * 119.99794 * 2 1 3 30 30 H 1.09006 * 109.46604 * 59.99345 * 3 2 1 31 31 H 1.09002 * 109.46783 * 300.00065 * 3 2 1 32 32 H 0.97002 * 119.99756 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.46762 * 60.00369 * 15 13 4 34 34 H 1.08992 * 109.47320 * 300.00345 * 15 13 4 35 35 H 1.09001 * 109.46812 * 299.99872 * 16 15 13 36 36 H 1.08994 * 109.47233 * 59.99937 * 16 15 13 37 37 H 1.07993 * 119.65250 * 359.97438 * 18 17 16 38 38 H 1.08002 * 120.36897 * 179.70206 * 21 19 18 39 39 H 1.07997 * 120.34495 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.5514 1.1832 6 1 5.1327 1.0400 1.3101 7 6 3.6713 2.3195 2.2183 8 7 2.8002 3.2687 1.9594 9 14 4.2124 2.0030 3.9780 10 1 5.6805 2.1982 4.0872 11 1 3.5186 2.9502 4.8872 12 1 3.8687 0.6093 4.3585 13 6 4.1793 1.3355 -1.1614 14 8 5.3923 1.3360 -1.1610 15 6 3.4263 1.2154 -2.4613 16 6 4.4211 1.1083 -3.6189 17 7 3.6890 0.9921 -4.8825 18 6 3.3580 -0.2370 -5.3560 19 6 2.6766 -0.3691 -6.5188 20 35 2.2183 -2.0892 -7.1569 21 6 2.3162 0.7707 -7.2521 22 6 2.6548 2.0037 -6.7773 23 6 3.3569 2.1049 -5.5642 24 8 3.6664 3.2023 -5.1283 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 2.4384 3.8052 2.6821 33 1 2.7995 2.0961 -2.6007 34 1 2.8000 0.3237 -2.4373 35 1 5.0477 1.9998 -3.6430 36 1 5.0476 0.2274 -3.4792 37 1 3.6375 -1.1179 -4.7973 38 1 1.7770 0.6733 -8.1828 39 1 2.3856 2.8931 -7.3276 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069779384.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:46 Heat of formation + Delta-G solvation = -34.640021 kcal Electronic energy + Delta-G solvation = -23665.619369 eV Core-core repulsion = 20041.255009 eV Total energy + Delta-G solvation = -3624.364359 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 356.052 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.51820 -38.73110 -37.10977 -35.63255 -35.01588 -32.88996 -31.82794 -31.33778 -30.77703 -28.82185 -26.23449 -25.43115 -24.29314 -23.56880 -22.10819 -21.01869 -18.91318 -17.80852 -17.54415 -16.90859 -16.54522 -15.79867 -15.76178 -15.03663 -14.68553 -14.50526 -14.37457 -14.24338 -13.84272 -13.14965 -13.00970 -12.76650 -12.62148 -12.54084 -12.27289 -12.08236 -11.68680 -11.47666 -11.37734 -11.04305 -10.95154 -10.73036 -10.65620 -10.59634 -10.40265 -10.28158 -10.16086 -10.02856 -9.98139 -8.98848 -8.54204 -8.11662 -7.55524 -6.37681 -3.99596 0.56322 1.26782 1.44101 2.59170 3.15840 3.23071 3.26124 3.41176 3.79491 4.10236 4.25802 4.53871 4.56546 4.72219 4.89451 4.98898 5.14485 5.19190 5.47854 5.50221 5.55799 5.61410 5.70443 5.72609 5.81623 6.01114 6.02381 6.07081 6.21807 6.27999 6.33275 6.41472 6.54718 6.85681 6.88105 7.23370 7.55328 7.89304 8.17016 8.43377 9.11189 9.34699 9.92047 10.65779 Molecular weight = 356.05amu Principal moments of inertia in cm(-1) A = 0.016485 B = 0.002762 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.133915 B =10136.854556 C =10835.582269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.099 3.901 4 N -0.434 5.434 5 C -0.312 4.312 6 H 0.093 0.907 7 C 0.037 3.963 8 N -0.866 5.866 9 Si 0.918 3.082 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.460 3.540 14 O -0.585 6.585 15 C -0.147 4.147 16 C 0.106 3.894 17 N -0.487 5.487 18 C 0.186 3.814 19 C -0.217 4.217 20 Br -0.033 7.033 21 C -0.002 4.002 22 C -0.231 4.231 23 C 0.510 3.490 24 O -0.530 6.530 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.116 0.884 31 H 0.047 0.953 32 H 0.269 0.731 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.171 0.829 38 H 0.141 0.859 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.689 -11.237 -17.734 22.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.177 4.177 3 C -0.025 4.025 4 N -0.152 5.152 5 C -0.439 4.439 6 H 0.111 0.889 7 C -0.167 4.167 8 N -0.504 5.504 9 Si 0.745 3.255 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.199 1.199 13 C 0.247 3.753 14 O -0.470 6.470 15 C -0.188 4.188 16 C -0.015 4.015 17 N -0.195 5.195 18 C 0.053 3.947 19 C -0.302 4.302 20 Br 0.051 6.949 21 C -0.024 4.024 22 C -0.254 4.254 23 C 0.311 3.689 24 O -0.410 6.410 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.133 0.867 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.100 0.900 35 H 0.131 0.869 36 H 0.119 0.881 37 H 0.188 0.812 38 H 0.159 0.841 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -6.131 -10.929 -17.490 21.516 hybrid contribution 0.006 0.212 0.932 0.956 sum -6.125 -10.716 -16.558 20.653 Atomic orbital electron populations 1.21677 0.96251 1.00722 1.01641 1.21964 0.94989 0.99215 1.01571 1.21710 0.81956 0.94548 1.04327 1.43478 1.04668 1.62204 1.04831 1.19429 1.06969 1.28846 0.88695 0.88887 1.25341 0.97210 0.93582 1.00578 1.69918 1.30710 1.16628 1.33131 0.86131 0.79192 0.78290 0.81935 1.19679 1.20935 1.19855 1.19896 0.87883 0.83086 0.84398 1.90535 1.13856 1.55772 1.86788 1.21916 0.99015 1.03759 0.94131 1.21935 0.94141 1.06582 0.78806 1.45910 1.45855 1.06028 1.21733 1.21990 0.90480 0.89441 0.92801 1.20825 1.15206 0.93057 1.01070 1.96708 1.92775 1.17719 1.87731 1.21241 0.92861 0.90521 0.97786 1.22150 1.06345 0.98987 0.97898 1.17273 0.81841 0.83759 0.85999 1.91035 1.55391 1.24617 1.69948 0.93214 0.93380 0.92638 0.93404 0.91609 0.86675 0.93491 0.92057 0.89274 0.90042 0.86913 0.88095 0.81210 0.84111 0.82713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.91 37.16 0.37 -1.69 16 2 C -0.14 -2.40 6.17 -26.73 -0.16 -2.57 16 3 C 0.10 2.10 4.71 -4.04 -0.02 2.08 16 4 N -0.43 -10.72 2.56 -114.81 -0.29 -11.01 16 5 C -0.31 -8.48 8.98 -14.93 -0.13 -8.61 16 6 H 0.09 2.64 7.70 -52.49 -0.40 2.23 16 7 C 0.04 0.97 4.92 -17.47 -0.09 0.89 16 8 N -0.87 -23.11 11.33 55.50 0.63 -22.48 16 9 Si 0.92 20.28 29.61 -169.99 -5.03 15.25 16 10 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 13 C 0.46 10.82 7.59 -10.98 -0.08 10.73 16 14 O -0.58 -15.59 15.81 5.54 0.09 -15.50 16 15 C -0.15 -2.61 4.63 -27.88 -0.13 -2.74 16 16 C 0.11 1.66 4.62 -4.04 -0.02 1.64 16 17 N -0.49 -6.49 2.59 -119.75 -0.31 -6.80 16 18 C 0.19 1.89 10.00 -16.80 -0.17 1.73 16 19 C -0.22 -2.04 6.19 -39.84 -0.25 -2.28 16 20 Br -0.03 -0.27 33.70 -68.01 -2.29 -2.56 16 21 C 0.00 -0.02 9.85 -39.49 -0.39 -0.40 16 22 C -0.23 -2.64 9.99 -39.38 -0.39 -3.03 16 23 C 0.51 7.72 7.41 -15.45 -0.11 7.61 16 24 O -0.53 -10.34 16.64 4.86 0.08 -10.26 16 25 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.76 6.59 -51.93 -0.34 0.42 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.12 2.73 5.34 -51.93 -0.28 2.45 16 31 H 0.05 0.94 6.66 -51.93 -0.35 0.60 16 32 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 33 H 0.09 1.68 7.41 -51.93 -0.38 1.29 16 34 H 0.08 1.24 6.53 -51.93 -0.34 0.90 16 35 H 0.11 2.08 7.34 -51.93 -0.38 1.70 16 36 H 0.10 1.41 7.97 -51.93 -0.41 0.99 16 37 H 0.17 1.32 8.03 -52.49 -0.42 0.90 16 38 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 349.10 15.07 5.26 5.26 Total: -1.00 -32.13 349.10 -8.43 -40.57 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -4.98 Total: 4.20 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -1.58 Total: 3.34 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.03 Total: -40.30 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: 0.17 Total: -25.76 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Atomic # 35 Polarization: -0.27 SS G_CDS: -2.29 Total: -2.56 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.13 -8.43 -40.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069779384.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.925 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds