Wall clock time and date at job start Tue Mar 31 2020 05:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34946 * 126.03678 * 2 1 4 4 C 1.35319 * 107.74641 * 180.02562 * 3 2 1 5 5 C 1.50692 * 126.03975 * 180.02562 * 4 3 2 6 6 H 1.09002 * 110.00050 * 20.35836 * 5 4 3 7 7 C 1.54322 * 109.88420 * 259.26464 * 5 4 3 8 8 C 1.55160 * 102.94331 * 218.38867 * 7 5 4 9 9 C 1.54687 * 101.67582 * 35.33757 * 8 7 5 10 10 N 1.47022 * 109.88472 * 141.45597 * 5 4 3 11 11 C 1.34773 * 125.64817 * 298.32847 * 10 5 4 12 12 O 1.21288 * 120.00074 * 359.97438 * 11 10 5 13 13 C 1.50703 * 120.00222 * 179.97438 * 11 10 5 14 14 O 1.42895 * 109.47227 * 179.97438 * 13 11 10 15 15 C 1.35672 * 117.00415 * 179.97438 * 14 13 11 16 16 C 1.39321 * 119.81454 * 359.73058 * 15 14 13 17 17 C 1.36429 * 120.18639 * 179.76144 * 16 15 14 18 18 C 1.40840 * 119.81175 * 0.50426 * 17 16 15 19 19 C 1.41214 * 120.17869 * 179.71800 * 18 17 16 20 20 H 1.08003 * 120.00102 * 24.56884 * 19 18 17 21 21 C 1.39895 * 119.99907 * 204.56003 * 19 18 17 22 22 N 1.30881 * 119.99752 * 17.94192 * 21 19 18 23 23 Si 1.86801 * 119.99937 * 197.94157 * 21 19 18 24 24 H 1.48503 * 109.47032 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46818 * 119.99829 * 23 21 19 26 26 H 1.48494 * 109.47088 * 240.00148 * 23 21 19 27 27 C 1.40833 * 119.63896 * 359.74849 * 18 17 16 28 28 C 1.36441 * 119.81306 * 359.97438 * 27 18 17 29 29 C 1.39869 * 107.91967 * 0.26616 * 4 3 2 30 30 N 1.30838 * 108.20319 * 359.55440 * 29 4 3 31 31 H 1.09007 * 109.47292 * 90.00104 * 1 2 3 32 32 H 1.09003 * 109.47224 * 209.99273 * 1 2 3 33 33 H 1.08996 * 109.47506 * 329.99617 * 1 2 3 34 34 H 1.07999 * 126.12882 * 0.02562 * 3 2 1 35 35 H 1.08999 * 110.72066 * 336.75651 * 7 5 4 36 36 H 1.09003 * 110.72028 * 100.02407 * 7 5 4 37 37 H 1.09004 * 111.00150 * 153.57540 * 8 7 5 38 38 H 1.08994 * 111.00860 * 277.38874 * 8 7 5 39 39 H 1.09001 * 110.39280 * 204.36627 * 9 8 7 40 40 H 1.09007 * 110.23893 * 82.10982 * 9 8 7 41 41 H 1.09000 * 109.46858 * 59.99845 * 13 11 10 42 42 H 1.08998 * 109.46836 * 299.99656 * 13 11 10 43 43 H 1.08004 * 119.90578 * 0.02562 * 16 15 14 44 44 H 1.08002 * 120.09870 * 180.25360 * 17 16 15 45 45 H 0.97000 * 119.99608 * 179.97438 * 22 21 19 46 46 H 1.08000 * 120.09418 * 180.02562 * 27 18 17 47 47 H 1.07999 * 119.90495 * 179.97438 * 28 27 18 48 48 H 1.08004 * 125.89883 * 179.73425 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7679 1.5453 -0.0002 6 1 4.5109 2.5425 0.3568 7 6 5.3517 1.6327 -1.4261 8 6 6.8829 1.6134 -1.1766 9 6 6.9904 0.6597 0.0365 10 7 5.8049 0.9578 0.8606 11 6 5.6924 0.7340 2.1849 12 8 4.6674 1.0252 2.7642 13 6 6.8403 0.1221 2.9459 14 8 6.4810 -0.0132 4.3223 15 6 7.4099 -0.5522 5.1514 16 6 8.6449 -0.9489 4.6432 17 6 9.5864 -1.4873 5.4709 18 6 9.3029 -1.6515 6.8407 19 6 10.2695 -2.2134 7.7033 20 1 11.3178 -2.1557 7.4502 21 6 9.8691 -2.8447 8.8857 22 7 8.6268 -3.2292 9.0340 23 14 11.1074 -3.1389 10.2530 24 1 12.4340 -2.6140 9.8407 25 1 10.6602 -2.4401 11.4846 26 1 11.2124 -4.5957 10.5207 27 6 8.0500 -1.2527 7.3453 28 6 7.1216 -0.7107 6.5050 29 6 3.5347 -0.7321 -0.0071 30 7 2.2892 -1.1328 -0.0007 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8901 0.5137 33 1 -0.3634 0.8899 0.5139 34 1 1.9281 2.1193 0.0004 35 1 5.0470 0.7717 -2.0211 36 1 5.0513 2.5624 -1.9095 37 1 7.4144 1.2122 -2.0396 38 1 7.2499 2.6077 -0.9221 39 1 7.9029 0.8606 0.5979 40 1 6.9697 -0.3780 -0.2966 41 1 7.7164 0.7649 2.8609 42 1 7.0685 -0.8599 2.5314 43 1 8.8593 -0.8259 3.5918 44 1 10.5449 -1.7906 5.0762 45 1 8.3493 -3.6673 9.8537 46 1 7.8250 -1.3748 8.3945 47 1 6.1602 -0.4048 6.8903 48 1 4.4055 -1.3710 -0.0132 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069847113.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:33 Heat of formation + Delta-G solvation = 19.105297 kcal Electronic energy + Delta-G solvation = -30547.268400 eV Core-core repulsion = 26375.646904 eV Total energy + Delta-G solvation = -4171.621496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 355.168 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.32605 -41.13999 -40.23324 -38.55647 -37.83534 -35.20520 -34.24255 -33.00699 -32.05624 -31.76359 -30.97043 -29.57644 -28.82554 -27.10897 -26.59788 -24.48885 -23.00446 -22.54156 -22.39097 -22.01418 -21.39664 -19.99251 -19.28267 -18.89987 -18.01040 -17.60611 -17.37661 -16.95865 -16.88266 -16.33198 -16.28152 -15.74890 -15.51940 -15.28204 -14.99499 -14.77761 -14.62019 -14.25323 -14.12888 -14.02334 -13.83901 -13.71658 -13.58901 -13.46136 -13.31923 -13.17634 -12.93197 -12.80213 -12.61580 -12.37661 -12.28760 -12.04587 -11.79358 -11.77551 -11.61996 -11.42829 -11.28448 -10.89645 -10.83332 -10.39483 -9.77224 -9.56597 -9.26158 -8.94878 -8.59772 -6.22796 0.92470 0.93354 1.02795 1.40544 1.47197 1.51498 1.56216 1.57979 1.69769 1.89105 2.23236 2.72141 2.85261 3.48857 3.60698 3.70058 3.74414 3.93127 3.96172 4.07612 4.11921 4.21469 4.28295 4.32205 4.35996 4.37515 4.37965 4.40700 4.63514 4.64606 4.79730 4.81857 4.83285 5.01154 5.05697 5.06809 5.12316 5.20095 5.21393 5.27812 5.43510 5.46615 5.58172 5.62598 5.63382 5.86904 6.06141 6.12940 6.24775 6.42939 6.56067 6.69745 6.78086 6.95175 7.07607 7.14575 8.37149 Molecular weight = 355.17amu Principal moments of inertia in cm(-1) A = 0.016990 B = 0.002003 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.672182 B =13973.318463 C =15085.267754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.381 5.381 3 C 0.066 3.934 4 C -0.252 4.252 5 C 0.214 3.786 6 H 0.075 0.925 7 C -0.110 4.110 8 C -0.122 4.122 9 C 0.081 3.919 10 N -0.606 5.606 11 C 0.532 3.468 12 O -0.565 6.565 13 C 0.049 3.951 14 O -0.329 6.329 15 C -0.005 4.005 16 C -0.159 4.159 17 C -0.202 4.202 18 C 0.055 3.945 19 C -0.495 4.495 20 H 0.080 0.920 21 C 0.030 3.970 22 N -0.833 5.833 23 Si 0.983 3.017 24 H -0.255 1.255 25 H -0.268 1.268 26 H -0.267 1.267 27 C -0.154 4.154 28 C -0.135 4.135 29 C 0.052 3.948 30 N -0.341 5.341 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.111 0.889 34 H 0.204 0.796 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.139 0.861 44 H 0.114 0.886 45 H 0.287 0.713 46 H 0.108 0.892 47 H 0.098 0.902 48 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.523 10.540 -24.691 27.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.163 5.163 3 C -0.082 4.082 4 C -0.264 4.264 5 C 0.110 3.890 6 H 0.093 0.907 7 C -0.148 4.148 8 C -0.160 4.160 9 C -0.040 4.040 10 N -0.341 5.341 11 C 0.320 3.680 12 O -0.443 6.443 13 C -0.030 4.030 14 O -0.244 6.244 15 C -0.049 4.049 16 C -0.177 4.177 17 C -0.222 4.222 18 C 0.053 3.947 19 C -0.524 4.524 20 H 0.099 0.901 21 C -0.183 4.183 22 N -0.459 5.459 23 Si 0.804 3.196 24 H -0.178 1.178 25 H -0.192 1.192 26 H -0.192 1.192 27 C -0.173 4.173 28 C -0.154 4.154 29 C -0.134 4.134 30 N -0.163 5.163 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.129 0.871 34 H 0.221 0.779 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.157 0.843 44 H 0.132 0.868 45 H 0.097 0.903 46 H 0.126 0.874 47 H 0.116 0.884 48 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -9.387 9.598 -24.092 27.580 hybrid contribution 0.701 0.041 1.106 1.310 sum -8.686 9.638 -22.986 26.395 Atomic orbital electron populations 1.22168 0.72163 1.05515 1.04775 1.48771 1.07900 1.03343 1.56317 1.22769 0.90465 0.94505 1.00440 1.20401 0.95296 0.93757 1.16938 1.19889 0.83992 0.93762 0.91324 0.90743 1.22676 0.95334 1.04317 0.92468 1.22761 0.95736 1.00095 0.97363 1.22751 0.87472 1.01021 0.92788 1.48456 1.17775 1.62347 1.05492 1.19988 0.87989 0.78383 0.81641 1.90696 1.32196 1.52623 1.68813 1.22431 0.96541 1.02535 0.81455 1.85900 1.40802 1.79637 1.18070 1.18693 0.90006 1.06183 0.89979 1.20733 0.93028 1.03958 0.99993 1.20840 1.00104 1.08281 0.92980 1.17987 0.93048 0.91141 0.92498 1.19758 0.94798 1.33185 1.04701 0.90140 1.26799 0.97773 0.92597 1.01167 1.69914 1.19669 1.29170 1.27196 0.85141 0.78819 0.78611 0.77005 1.17815 1.19237 1.19227 1.20868 0.95321 1.02297 0.98830 1.19971 0.99482 1.04268 0.91640 1.23702 0.94882 0.95355 0.99444 1.77260 1.02569 1.10171 1.26306 0.88766 0.89955 0.87105 0.77900 0.90245 0.87899 0.87204 0.89781 0.89099 0.89843 0.87648 0.88377 0.84292 0.86813 0.90284 0.87390 0.88377 0.80699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.17 11.47 127.77 1.47 2.63 16 2 N -0.38 -8.44 4.01 -369.55 -1.48 -9.92 16 3 C 0.07 1.31 11.40 83.54 0.95 2.26 16 4 C -0.25 -5.64 4.19 -20.15 -0.08 -5.73 16 5 C 0.21 3.87 3.29 44.59 0.15 4.02 16 6 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 7 C -0.11 -1.03 6.47 31.78 0.21 -0.83 16 8 C -0.12 -0.85 7.07 31.91 0.23 -0.62 16 9 C 0.08 0.99 6.68 86.78 0.58 1.57 16 10 N -0.61 -12.89 2.81 -792.62 -2.23 -15.12 16 11 C 0.53 16.87 7.71 87.66 0.68 17.55 16 12 O -0.57 -23.78 16.34 15.98 0.26 -23.51 16 13 C 0.05 1.54 4.22 71.24 0.30 1.84 16 14 O -0.33 -14.62 9.65 -70.85 -0.68 -15.31 16 15 C 0.00 -0.24 6.71 22.79 0.15 -0.08 16 16 C -0.16 -6.83 8.96 22.11 0.20 -6.63 16 17 C -0.20 -9.73 9.74 22.48 0.22 -9.51 16 18 C 0.06 3.04 5.57 -21.28 -0.12 2.92 16 19 C -0.49 -26.80 9.04 23.40 0.21 -26.58 16 20 H 0.08 4.14 7.91 -2.91 -0.02 4.11 16 21 C 0.03 1.56 5.13 85.24 0.44 2.00 16 22 N -0.83 -44.98 10.96 21.82 0.24 -44.75 16 23 Si 0.98 38.78 29.60 68.60 2.03 40.81 16 24 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 25 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 26 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 27 C -0.15 -8.54 8.64 22.49 0.19 -8.34 16 28 C -0.13 -7.04 9.92 22.11 0.22 -6.82 16 29 C 0.05 1.36 11.66 85.24 0.99 2.35 16 30 N -0.34 -9.82 12.58 -57.02 -0.72 -10.54 16 31 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.20 2.41 8.06 -2.91 -0.02 2.39 16 35 H 0.08 0.80 7.84 -2.39 -0.02 0.78 16 36 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.11 0.32 8.14 -2.38 -0.02 0.31 16 38 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.09 0.95 7.48 -2.39 -0.02 0.93 16 40 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.11 2.74 7.36 -2.39 -0.02 2.72 16 42 H 0.10 2.70 7.63 -2.39 -0.02 2.68 16 43 H 0.14 4.61 6.27 -2.91 -0.02 4.59 16 44 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 45 H 0.29 14.02 8.30 -92.71 -0.77 13.25 16 46 H 0.11 6.25 6.16 -2.91 -0.02 6.23 16 47 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 48 H 0.18 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -81.63 401.48 5.36 -76.26 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.97 Total: 30.08 kcal Atomic # 6 Polarization: -34.99 SS G_CDS: 6.98 Total: -28.01 kcal Atomic # 7 Polarization: -76.13 SS G_CDS: -4.19 Total: -80.32 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.42 Total: -38.82 kcal Atomic # 14 Polarization: 38.78 SS G_CDS: 2.03 Total: 40.81 kcal Total: -81.63 5.36 -76.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069847113.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.367 kcal (2) G-P(sol) polarization free energy of solvation -81.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds