Wall clock time and date at job start Tue Mar 31 2020 04:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30887 * 1 3 3 Si 1.86810 * 119.99756 * 2 1 4 4 H 1.48494 * 109.46874 * 240.00020 * 3 2 1 5 5 H 1.48502 * 109.46932 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46933 * 119.99587 * 3 2 1 7 7 C 1.39886 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99686 * 190.66663 * 7 2 1 9 9 C 1.41213 * 120.00120 * 10.67062 * 7 2 1 10 10 C 1.40827 * 120.17811 * 29.46444 * 9 7 2 11 11 C 1.36446 * 119.80787 * 180.02562 * 10 9 7 12 12 C 1.39308 * 120.18762 * 0.02562 * 11 10 9 13 13 O 1.35671 * 119.81940 * 179.97438 * 12 11 10 14 14 C 1.42901 * 117.00308 * 180.02562 * 13 12 11 15 15 C 1.50692 * 109.47471 * 180.02562 * 14 13 12 16 16 O 1.21281 * 120.00048 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00203 * 179.72738 * 15 14 13 18 18 C 1.47424 * 125.64776 * 354.84254 * 17 15 14 19 19 C 1.54694 * 104.94131 * 204.07648 * 18 17 15 20 20 C 1.55159 * 101.67828 * 323.27802 * 19 18 17 21 21 C 1.47022 * 125.64957 * 175.15524 * 17 15 14 22 22 H 1.08998 * 109.88649 * 59.48597 * 21 17 15 23 23 C 1.52998 * 109.88397 * 298.31764 * 21 17 15 24 24 N 1.46501 * 109.47215 * 175.66576 * 23 21 17 25 25 C 1.34948 * 126.03478 * 123.30890 * 24 23 21 26 26 C 1.35315 * 107.74292 * 179.83708 * 25 24 23 27 27 C 1.39870 * 107.92066 * 0.41997 * 26 25 24 28 28 N 1.30832 * 108.20311 * 359.73729 * 27 26 25 29 29 C 1.39313 * 120.36376 * 0.25624 * 12 11 10 30 30 C 1.36439 * 120.18501 * 359.48552 * 29 12 11 31 31 H 0.96993 * 120.00037 * 0.02562 * 1 2 3 32 32 H 1.07996 * 120.09602 * 359.97438 * 10 9 7 33 33 H 1.08006 * 119.90490 * 179.97438 * 11 10 9 34 34 H 1.08998 * 109.46887 * 60.00141 * 14 13 12 35 35 H 1.09002 * 109.46957 * 300.00703 * 14 13 12 36 36 H 1.09002 * 110.36519 * 323.00836 * 18 17 15 37 37 H 1.08997 * 110.36669 * 85.33107 * 18 17 15 38 38 H 1.09002 * 111.09785 * 205.10791 * 19 18 17 39 39 H 1.08995 * 110.85175 * 81.34132 * 19 18 17 40 40 H 1.09004 * 110.71944 * 276.97494 * 20 19 18 41 41 H 1.08997 * 110.87322 * 153.77218 * 20 19 18 42 42 H 1.09000 * 109.47508 * 295.66818 * 23 21 17 43 43 H 1.09010 * 109.46965 * 55.66573 * 23 21 17 44 44 H 1.07993 * 126.12811 * 359.97438 * 25 24 23 45 45 H 1.08000 * 126.04132 * 180.15357 * 26 25 24 46 46 H 1.08005 * 125.90197 * 179.71724 * 27 26 25 47 47 H 1.08000 * 119.90713 * 179.72274 * 29 12 11 48 48 H 1.08004 * 120.09675 * 180.25878 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6179 0.0000 4 1 3.0965 1.6965 -1.2125 5 1 1.2778 2.7465 -0.0006 6 1 3.0965 1.6966 1.2125 7 6 2.0083 -1.2114 0.0005 8 1 3.0743 -1.2194 0.1737 9 6 1.3206 -2.4239 -0.2254 10 6 0.1618 -2.4421 -1.0255 11 6 -0.4970 -3.6178 -1.2383 12 6 -0.0268 -4.7978 -0.6663 13 8 -0.6881 -5.9626 -0.8825 14 6 -0.1537 -7.1361 -0.2666 15 6 -1.0134 -8.3231 -0.6167 16 8 -1.9876 -8.1787 -1.3244 17 7 -0.6963 -9.5464 -0.1482 18 6 0.5143 -9.8841 0.6224 19 6 0.7296 -11.3974 0.3841 20 6 -0.7306 -11.9211 0.3521 21 6 -1.4971 -10.7664 -0.3267 22 1 -1.6199 -10.9772 -1.3891 23 6 -2.8660 -10.5916 0.3337 24 7 -3.6932 -11.7698 0.0624 25 6 -4.2752 -12.5613 0.9875 26 6 -4.9516 -13.5330 0.3322 27 6 -4.7691 -13.3339 -1.0402 28 7 -4.0149 -12.2773 -1.2031 29 6 1.1154 -4.7875 0.1312 30 6 1.7889 -3.6212 0.3497 31 1 -0.4850 0.8400 -0.0004 32 1 -0.2047 -1.5280 -1.4686 33 1 -1.3861 -3.6335 -1.8514 34 1 -0.1391 -7.0040 0.8153 35 1 0.8616 -7.3046 -0.6257 36 1 1.3689 -9.3163 0.2545 37 1 0.3558 -9.6883 1.6829 38 1 1.2885 -11.8481 1.2043 39 1 1.2287 -11.5729 -0.5688 40 1 -1.1023 -12.0890 1.3629 41 1 -0.8031 -12.8331 -0.2404 42 1 -2.7383 -10.4774 1.4102 43 1 -3.3537 -9.7043 -0.0704 44 1 -4.2141 -12.4397 2.0588 45 1 -5.5269 -14.3251 0.7883 46 1 -5.1794 -13.9468 -1.8292 47 1 1.4708 -5.7058 0.5747 48 1 2.6766 -3.6156 0.9649 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069895644.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:00 Heat of formation + Delta-G solvation = 38.682389 kcal Electronic energy + Delta-G solvation = -30189.220578 eV Core-core repulsion = 26018.448009 eV Total energy + Delta-G solvation = -4170.772569 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 355.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.46458 -40.40774 -38.86586 -37.61207 -36.25945 -34.01240 -33.31000 -32.10266 -30.60741 -30.05744 -29.60715 -29.10875 -27.82361 -26.01985 -24.77500 -23.35614 -21.90980 -21.37741 -21.23545 -20.81277 -20.47162 -19.11613 -17.85184 -17.65273 -17.24352 -16.56969 -16.45247 -15.89333 -15.73127 -15.21371 -15.06425 -14.51032 -14.24336 -14.03038 -14.02334 -13.91782 -13.71722 -13.49941 -13.14021 -13.06383 -12.92994 -12.67400 -12.35030 -12.22133 -12.08727 -11.77950 -11.72735 -11.50826 -11.40903 -11.26853 -11.13694 -10.97376 -10.83502 -10.71804 -10.03001 -9.87902 -9.80982 -9.71087 -9.34659 -9.11378 -9.07269 -8.76554 -7.69046 -7.02132 -6.69050 -4.30868 1.65854 2.05730 2.47490 2.62111 2.64753 2.76164 2.90268 3.08069 3.10499 3.18664 3.85993 3.95503 4.01296 4.13802 4.25814 4.49030 4.55232 4.62002 4.63341 4.70761 4.79244 4.84173 5.05620 5.15186 5.22423 5.26556 5.28866 5.35209 5.37741 5.43270 5.51356 5.57823 5.62006 5.73355 5.76599 5.93744 5.97226 6.16463 6.41199 6.66354 6.73684 6.92575 7.06026 7.14329 7.17854 7.40726 7.48192 7.52314 7.71362 7.97919 8.02143 8.17893 8.37841 8.61194 8.88676 8.94325 10.26108 Molecular weight = 355.17amu Principal moments of inertia in cm(-1) A = 0.024403 B = 0.001724 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.137305 B =16233.963936 C =16950.749594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.464 4.464 8 H 0.075 0.925 9 C 0.088 3.912 10 C -0.124 4.124 11 C -0.118 4.118 12 C -0.007 4.007 13 O -0.304 6.304 14 C 0.058 3.942 15 C 0.532 3.468 16 O -0.507 6.507 17 N -0.620 5.620 18 C 0.095 3.905 19 C -0.131 4.131 20 C -0.124 4.124 21 C 0.132 3.868 22 H 0.092 0.908 23 C 0.122 3.878 24 N -0.363 5.363 25 C 0.052 3.948 26 C -0.277 4.277 27 C 0.040 3.960 28 N -0.289 5.289 29 C -0.172 4.172 30 C -0.192 4.192 31 H 0.280 0.720 32 H 0.128 0.872 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.171 0.829 45 H 0.146 0.854 46 H 0.182 0.818 47 H 0.093 0.907 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.171 -25.209 5.205 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.086 3.914 10 C -0.144 4.144 11 C -0.137 4.137 12 C -0.050 4.050 13 O -0.219 6.219 14 C -0.022 4.022 15 C 0.321 3.679 16 O -0.380 6.380 17 N -0.359 5.359 18 C -0.028 4.028 19 C -0.169 4.169 20 C -0.162 4.162 21 C 0.027 3.973 22 H 0.110 0.890 23 C -0.001 4.001 24 N -0.146 5.146 25 C -0.094 4.094 26 C -0.306 4.306 27 C -0.146 4.146 28 N -0.110 5.110 29 C -0.190 4.190 30 C -0.212 4.212 31 H 0.091 0.909 32 H 0.146 0.854 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.189 0.811 45 H 0.164 0.836 46 H 0.199 0.801 47 H 0.112 0.888 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.445 -23.938 3.861 24.370 hybrid contribution 0.124 0.153 1.025 1.044 sum -2.321 -23.784 4.886 24.392 Atomic orbital electron populations 1.69782 1.07341 1.29121 1.37146 1.25865 0.94843 1.01130 0.92535 0.86324 0.79945 0.80337 0.79787 1.18969 1.20408 1.19162 1.19411 0.95760 0.90441 1.43881 0.90647 1.17624 0.92106 0.92240 0.89465 1.21037 0.97829 0.95818 0.99695 1.19877 1.00684 0.90553 1.02553 1.18650 0.96029 0.84387 1.05896 1.85937 1.52029 1.13333 1.70565 1.22044 0.96403 0.84889 0.98835 1.20221 0.85859 0.82455 0.79411 1.90759 1.28166 1.84060 1.34970 1.48446 1.23559 1.07203 1.56649 1.22405 0.87561 0.96419 0.96385 1.22750 0.96532 0.94231 1.03423 1.22679 0.95044 0.97243 1.01212 1.21733 0.89443 0.84548 1.01528 0.88967 1.22127 0.90603 0.86051 1.01302 1.48592 1.39236 1.22761 1.04003 1.22577 0.97597 0.92924 0.96328 1.21493 1.10903 1.04708 0.93514 1.23919 0.97829 0.95746 0.97091 1.77454 1.19186 1.12989 1.01402 1.20381 0.97454 0.98024 1.03188 1.20604 1.02415 0.93071 1.05126 0.90905 0.85419 0.88197 0.90013 0.90127 0.89781 0.90751 0.89333 0.90214 0.90558 0.89862 0.88452 0.88258 0.81136 0.83648 0.80147 0.88849 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.97 10.88 55.54 0.60 -20.37 16 2 C 0.07 1.81 5.25 -17.34 -0.09 1.72 16 3 Si 0.91 18.71 29.57 -169.99 -5.03 13.68 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.46 -12.19 9.05 -37.84 -0.34 -12.53 16 8 H 0.08 1.89 7.87 -52.49 -0.41 1.47 16 9 C 0.09 2.32 5.54 -106.81 -0.59 1.73 16 10 C -0.12 -3.25 8.60 -39.25 -0.34 -3.59 16 11 C -0.12 -2.89 9.92 -39.83 -0.40 -3.29 16 12 C -0.01 -0.15 6.71 -38.78 -0.26 -0.41 16 13 O -0.30 -6.48 9.65 -38.62 -0.37 -6.86 16 14 C 0.06 0.90 4.31 36.00 0.16 1.05 16 15 C 0.53 8.08 7.65 -10.99 -0.08 8.00 16 16 O -0.51 -9.93 15.69 -14.35 -0.23 -10.16 16 17 N -0.62 -6.71 3.07 -163.16 -0.50 -7.21 16 18 C 0.10 0.67 6.64 -2.65 -0.02 0.65 16 19 C -0.13 -0.72 7.07 -24.70 -0.17 -0.89 16 20 C -0.12 -0.82 6.27 -24.89 -0.16 -0.97 16 21 C 0.13 1.31 2.98 -66.95 -0.20 1.11 16 22 H 0.09 1.17 8.09 -51.93 -0.42 0.75 16 23 C 0.12 1.23 5.90 -4.04 -0.02 1.21 16 24 N -0.36 -3.77 3.45 -61.36 -0.21 -3.98 16 25 C 0.05 0.42 11.45 -17.22 -0.20 0.22 16 26 C -0.28 -2.21 10.80 -40.01 -0.43 -2.64 16 27 C 0.04 0.38 12.03 -17.37 -0.21 0.17 16 28 N -0.29 -3.54 12.40 30.62 0.38 -3.16 16 29 C -0.17 -3.72 8.96 -39.83 -0.36 -4.08 16 30 C -0.19 -4.58 9.74 -39.25 -0.38 -4.96 16 31 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 32 H 0.13 3.42 6.26 -52.49 -0.33 3.10 16 33 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 34 H 0.08 1.12 7.64 -51.93 -0.40 0.72 16 35 H 0.08 1.10 7.27 -51.93 -0.38 0.73 16 36 H 0.08 0.55 7.50 -51.93 -0.39 0.16 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.41 7.78 -51.93 -0.40 0.01 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.10 0.72 7.97 -51.93 -0.41 0.31 16 43 H 0.10 1.33 6.91 -51.92 -0.36 0.97 16 44 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.18 1.17 8.06 -52.48 -0.42 0.75 16 47 H 0.09 1.66 6.27 -52.49 -0.33 1.33 16 48 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 399.61 15.07 6.02 6.02 Total: -1.00 -33.46 399.61 -10.20 -43.66 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -6.77 Total: 5.88 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -4.10 Total: -17.50 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.27 Total: -34.72 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.60 Total: -17.02 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.46 -10.20 -43.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069895644.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.342 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds