Wall clock time and date at job start Tue Mar 31 2020 06:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47392 * 250.78416 * 3 2 1 5 5 C 1.36863 * 119.99617 * 263.52722 * 4 3 2 6 6 H 1.08005 * 119.99383 * 140.67352 * 5 4 3 7 7 C 1.39008 * 120.00386 * 320.67357 * 5 4 3 8 8 N 1.31392 * 119.99955 * 163.37068 * 7 5 4 9 9 Si 1.86806 * 119.99765 * 343.36329 * 7 5 4 10 10 H 1.48504 * 109.46802 * 89.48151 * 9 7 5 11 11 H 1.48495 * 109.46838 * 209.47703 * 9 7 5 12 12 H 1.48492 * 109.47120 * 329.47856 * 9 7 5 13 13 C 1.34777 * 119.99799 * 83.52746 * 4 3 2 14 14 O 1.21757 * 119.99650 * 181.54224 * 13 4 3 15 15 C 1.46385 * 120.00101 * 1.54377 * 13 4 3 16 16 C 1.37034 * 126.11794 * 171.90166 * 15 13 4 17 17 N 1.30593 * 114.00974 * 180.02562 * 16 15 13 18 18 C 1.30422 * 117.30673 * 0.02562 * 17 16 15 19 19 C 1.47647 * 124.74235 * 179.97438 * 18 17 16 20 20 C 1.39686 * 120.08097 * 180.02562 * 19 18 17 21 21 C 1.37835 * 119.99584 * 180.02562 * 20 19 18 22 22 C 1.38799 * 120.22197 * 359.97438 * 21 20 19 23 23 C 1.39481 * 120.06324 * 0.02562 * 22 21 20 24 24 C 1.38199 * 119.98359 * 0.02562 * 23 22 21 25 25 O 1.36539 * 108.60413 * 180.02562 * 23 22 21 26 26 C 1.43972 * 105.46882 * 342.68989 * 25 23 22 27 27 O 1.36457 * 131.34661 * 180.02562 * 22 21 20 28 28 S 1.70916 * 110.51125 * 0.26409 * 18 17 16 29 29 H 1.09004 * 109.47191 * 130.77797 * 3 2 1 30 30 H 1.09005 * 109.47456 * 10.78596 * 3 2 1 31 31 H 0.97001 * 119.99883 * 180.02562 * 8 7 5 32 32 H 1.08000 * 122.99695 * 0.05448 * 16 15 13 33 33 H 1.07995 * 119.99797 * 0.02562 * 20 19 18 34 34 H 1.07999 * 119.89079 * 179.97438 * 21 20 19 35 35 H 1.07996 * 120.04735 * 179.97438 * 24 23 22 36 36 H 1.09000 * 110.57159 * 145.75872 * 26 25 23 37 37 H 1.09002 * 110.57064 * 268.62399 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0962 0.4555 1.3043 5 6 3.4497 1.7654 1.4837 6 1 3.2043 2.2693 2.4070 7 6 4.1245 2.4474 0.4778 8 7 4.1784 3.7601 0.4960 9 14 4.9550 1.4974 -0.8998 10 1 3.9914 1.2935 -2.0112 11 1 6.1259 2.2651 -1.3944 12 1 5.4076 0.1787 -0.3887 13 6 3.1972 -0.4161 2.3273 14 8 3.5762 -0.0323 3.4188 15 6 2.8512 -1.8242 2.1261 16 6 3.0522 -2.8414 3.0221 17 7 2.6539 -4.0102 2.5972 18 6 2.1285 -4.0662 1.4048 19 6 1.6259 -5.2977 0.7637 20 6 1.0808 -5.2457 -0.5213 21 6 0.6117 -6.3963 -1.1179 22 6 0.6792 -7.6090 -0.4462 23 6 1.2224 -7.6677 0.8372 24 6 1.6934 -6.5173 1.4410 25 8 1.1736 -8.9610 1.2721 26 6 0.2257 -9.6200 0.4118 27 8 0.2909 -8.8650 -0.8121 28 16 2.1103 -2.5161 0.6850 29 1 2.9711 0.6720 -0.7782 30 1 2.9719 -1.0087 -0.1923 31 1 4.6489 4.2359 -0.2062 32 1 3.4996 -2.6898 3.9933 33 1 1.0269 -4.3040 -1.0473 34 1 0.1902 -6.3540 -2.1114 35 1 2.1138 -6.5614 2.4348 36 1 0.5201 -10.6552 0.2395 37 1 -0.7764 -9.5716 0.8379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069898211.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:46 Heat of formation + Delta-G solvation = 42.829374 kcal Electronic energy + Delta-G solvation = -27755.599433 eV Core-core repulsion = 23592.948800 eV Total energy + Delta-G solvation = -4162.650634 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 357.062 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.49160 -39.86043 -39.17530 -37.94066 -36.64108 -36.46549 -34.97101 -32.60199 -31.93060 -30.83818 -29.39778 -28.22854 -26.76244 -25.89044 -24.84138 -23.38957 -22.83634 -21.19438 -19.45586 -18.98467 -18.42258 -18.28483 -17.74982 -17.46454 -17.03076 -16.60289 -16.01160 -15.92364 -15.04132 -14.83239 -14.80050 -14.60975 -14.21187 -14.18407 -13.92968 -13.88318 -13.50176 -13.33626 -13.19122 -13.02758 -12.94557 -12.77038 -12.58735 -12.15633 -11.90513 -11.53655 -11.41112 -11.38054 -11.16564 -10.77213 -10.25807 -9.68084 -9.58445 -9.50263 -9.22107 -9.11301 -8.92563 -8.36290 -8.02811 -6.73666 -4.36326 -0.11633 0.86618 1.07450 1.20451 1.63034 2.36365 2.64250 2.69551 2.81256 2.91944 2.98326 3.05684 3.06390 3.36245 3.64378 3.79063 3.86064 4.01633 4.10725 4.18454 4.28880 4.49850 4.69925 4.71224 4.74329 4.85469 4.90705 5.00951 5.17539 5.21168 5.38275 5.46435 5.65279 5.74764 5.81577 5.88591 6.02259 6.28665 6.73438 7.08504 7.67320 7.71405 7.83003 8.04899 8.50377 8.83354 9.20825 10.36202 Molecular weight = 357.06amu Principal moments of inertia in cm(-1) A = 0.020094 B = 0.002726 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.143534 B =10268.840976 C =10828.444931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.196 3.804 3 C 0.161 3.839 4 N -0.445 5.445 5 C -0.315 4.315 6 H 0.119 0.881 7 C 0.064 3.936 8 N -0.841 5.841 9 Si 0.859 3.141 10 H -0.262 1.262 11 H -0.273 1.273 12 H -0.252 1.252 13 C 0.541 3.459 14 O -0.528 6.528 15 C -0.260 4.260 16 C 0.102 3.898 17 N -0.464 5.464 18 C 0.037 3.963 19 C -0.006 4.006 20 C -0.090 4.090 21 C -0.095 4.095 22 C 0.041 3.959 23 C 0.030 3.970 24 C -0.056 4.056 25 O -0.306 6.306 26 C 0.213 3.787 27 O -0.307 6.307 28 S 0.188 5.812 29 H 0.133 0.867 30 H 0.107 0.893 31 H 0.282 0.718 32 H 0.191 0.809 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.149 0.851 36 H 0.132 0.868 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.724 -21.489 -6.534 22.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.092 5.092 2 C -0.125 4.125 3 C 0.033 3.967 4 N -0.167 5.167 5 C -0.442 4.442 6 H 0.136 0.864 7 C -0.146 4.146 8 N -0.475 5.475 9 Si 0.684 3.316 10 H -0.190 1.190 11 H -0.198 1.198 12 H -0.175 1.175 13 C 0.329 3.671 14 O -0.408 6.408 15 C -0.385 4.385 16 C -0.057 4.057 17 N -0.178 5.178 18 C -0.232 4.232 19 C -0.010 4.010 20 C -0.111 4.111 21 C -0.113 4.113 22 C -0.005 4.005 23 C -0.014 4.014 24 C -0.078 4.078 25 O -0.222 6.222 26 C 0.101 3.899 27 O -0.223 6.223 28 S 0.448 5.552 29 H 0.150 0.850 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.208 0.792 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.167 0.833 36 H 0.150 0.850 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.360 -21.392 -6.729 23.310 hybrid contribution 1.183 -0.434 0.043 1.261 sum -5.177 -21.826 -6.686 23.407 Atomic orbital electron populations 1.81074 1.12470 1.08653 1.06987 1.29533 0.95490 0.93198 0.94242 1.19856 0.82240 1.02041 0.92591 1.43517 1.56062 1.09894 1.07214 1.19172 1.36215 0.82608 1.06223 0.86367 1.25451 0.95587 0.95397 0.98138 1.69651 1.37838 1.06366 1.33616 0.87248 0.80689 0.81991 0.81627 1.18955 1.19817 1.17549 1.16676 0.82435 0.81793 0.86186 1.90769 1.49232 1.77239 1.23602 1.26687 1.12082 1.01276 0.98429 1.22295 0.98368 0.84379 1.00619 1.66344 1.12410 1.27009 1.12019 1.25351 1.03659 0.99221 0.95013 1.17467 1.00628 0.89436 0.93461 1.20954 0.98006 0.98401 0.93697 1.19876 1.02711 0.87496 1.01266 1.19981 1.00661 0.86397 0.93443 1.19601 1.03021 0.85484 0.93311 1.20094 0.99791 0.87031 1.00899 1.87401 1.61086 1.18360 1.55390 1.25653 0.93553 0.95636 0.75072 1.87349 1.85146 1.18786 1.31058 1.84176 1.54718 0.99161 1.17110 0.85002 0.87702 0.90680 0.79194 0.84084 0.83879 0.83279 0.85025 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.81 18.54 42.15 0.78 -7.03 16 2 C 0.20 3.54 13.23 -20.76 -0.27 3.27 16 3 C 0.16 2.90 4.00 -6.83 -0.03 2.87 16 4 N -0.45 -9.79 2.15 -119.52 -0.26 -10.05 16 5 C -0.31 -7.97 9.38 -15.02 -0.14 -8.11 16 6 H 0.12 3.39 7.93 -52.48 -0.42 2.98 16 7 C 0.06 1.55 5.35 -17.45 -0.09 1.46 16 8 N -0.84 -21.77 13.96 55.50 0.77 -20.99 16 9 Si 0.86 16.98 24.95 -169.99 -4.24 12.73 16 10 H -0.26 -4.55 6.48 56.52 0.37 -4.19 16 11 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 12 H -0.25 -4.80 7.11 56.52 0.40 -4.40 16 13 C 0.54 11.85 7.52 -12.98 -0.10 11.75 16 14 O -0.53 -13.25 16.76 5.14 0.09 -13.16 16 15 C -0.26 -4.68 6.27 -36.74 -0.23 -4.91 16 16 C 0.10 1.69 11.17 -18.51 -0.21 1.48 16 17 N -0.46 -7.28 10.03 -12.01 -0.12 -7.40 16 18 C 0.04 0.53 7.12 -14.31 -0.10 0.43 16 19 C -0.01 -0.08 5.87 -104.98 -0.62 -0.70 16 20 C -0.09 -0.91 9.55 -39.19 -0.37 -1.29 16 21 C -0.09 -0.88 10.04 -39.52 -0.40 -1.28 16 22 C 0.04 0.43 7.16 -38.91 -0.28 0.16 16 23 C 0.03 0.35 7.14 -39.13 -0.28 0.07 16 24 C -0.06 -0.68 9.68 -39.06 -0.38 -1.06 16 25 O -0.31 -3.23 11.41 -45.82 -0.52 -3.75 16 26 C 0.21 1.50 8.88 101.05 0.90 2.40 16 27 O -0.31 -2.99 11.40 -45.55 -0.52 -3.51 16 28 S 0.19 2.73 15.28 -107.50 -1.64 1.08 16 29 H 0.13 2.34 3.26 -51.93 -0.17 2.17 16 30 H 0.11 1.60 4.44 -22.46 -0.10 1.50 16 31 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.19 2.91 8.06 -52.49 -0.42 2.49 16 33 H 0.14 1.21 7.21 -52.49 -0.38 0.83 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 35 H 0.15 1.81 7.78 -52.49 -0.41 1.40 16 36 H 0.13 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 338.85 15.07 5.11 5.11 Total: -1.00 -30.23 338.85 -5.49 -35.71 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -2.33 Total: 4.72 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -2.60 Total: 6.54 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 1.18 Total: -45.47 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.96 Total: -20.42 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -4.24 Total: 12.73 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.64 Total: 1.08 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.23 -5.49 -35.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069898211.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.543 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds