Wall clock time and date at job start Tue Mar 31 2020 05:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46904 * 110.99397 * 2 1 4 4 C 1.50701 * 109.46907 * 293.94989 * 3 2 1 5 5 N 1.29820 * 118.35170 * 0.02562 * 4 3 2 6 6 C 1.35641 * 121.62632 * 179.97438 * 5 4 3 7 7 C 1.39632 * 121.62397 * 180.02562 * 6 5 4 8 8 C 1.37713 * 119.68813 * 179.97438 * 7 6 5 9 9 C 1.38873 * 120.83154 * 0.02562 * 8 7 6 10 10 C 1.37787 * 120.57080 * 359.97140 * 9 8 7 11 11 C 1.39379 * 119.51824 * 0.02846 * 10 9 8 12 12 C 1.46956 * 121.90587 * 180.02562 * 11 10 9 13 13 O 1.21728 * 121.28865 * 359.97438 * 12 11 10 14 14 N 1.35343 * 117.42392 * 179.97438 * 12 11 10 15 15 C 1.37104 * 119.71512 * 180.02562 * 14 12 11 16 16 H 1.08001 * 120.00349 * 137.11003 * 15 14 12 17 17 C 1.39072 * 120.00015 * 317.10462 * 15 14 12 18 18 N 1.31256 * 120.00191 * 339.99303 * 17 15 14 19 19 Si 1.86801 * 120.00070 * 159.98923 * 17 15 14 20 20 H 1.48497 * 109.47148 * 90.00277 * 19 17 15 21 21 H 1.48499 * 109.47446 * 210.00423 * 19 17 15 22 22 H 1.48505 * 109.47193 * 330.00411 * 19 17 15 23 23 C 1.46890 * 111.00095 * 123.95212 * 2 1 3 24 24 C 1.53004 * 109.47142 * 71.73330 * 23 2 1 25 25 C 1.53001 * 109.47231 * 182.23955 * 24 23 2 26 26 C 1.52996 * 109.47025 * 179.97438 * 25 24 23 27 27 C 1.52992 * 109.47107 * 60.00135 * 26 25 24 28 28 C 1.52993 * 109.47192 * 299.99639 * 27 26 25 29 29 C 1.52992 * 109.47016 * 62.24020 * 24 23 2 30 30 H 1.09002 * 109.47160 * 54.54192 * 1 2 3 31 31 H 1.09006 * 109.46671 * 174.53831 * 1 2 3 32 32 H 1.08999 * 109.47250 * 294.53903 * 1 2 3 33 33 H 1.09004 * 109.46593 * 173.95467 * 3 2 1 34 34 H 1.08995 * 109.47288 * 53.95475 * 3 2 1 35 35 H 1.07997 * 120.15708 * 0.02562 * 7 6 5 36 36 H 1.08006 * 119.58413 * 180.28234 * 8 7 6 37 37 H 1.08002 * 119.71261 * 179.97438 * 9 8 7 38 38 H 1.07999 * 120.24538 * 180.02562 * 10 9 8 39 39 H 0.97003 * 120.00049 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.47622 * 191.73356 * 23 2 1 41 41 H 1.09009 * 109.47436 * 311.73505 * 23 2 1 42 42 H 1.09005 * 109.46976 * 302.23698 * 24 23 2 43 43 H 1.08997 * 109.47114 * 300.00067 * 25 24 23 44 44 H 1.09003 * 109.47216 * 59.99960 * 25 24 23 45 45 H 1.09005 * 109.47091 * 299.99687 * 26 25 24 46 46 H 1.09012 * 109.46916 * 179.97438 * 26 25 24 47 47 H 1.09008 * 109.47303 * 179.97438 * 27 26 25 48 48 H 1.08997 * 109.47178 * 59.99830 * 27 26 25 49 49 H 1.08997 * 109.47215 * 300.00168 * 28 27 26 50 50 H 1.09003 * 109.47340 * 180.02562 * 28 27 26 51 51 H 1.09004 * 109.47212 * 299.99602 * 29 24 23 52 52 H 1.08997 * 109.47178 * 60.00026 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2985 5 7 0.9595 1.3734 -2.1775 6 6 0.6009 1.9162 -3.3677 7 6 -0.1281 1.1916 -4.3129 8 6 -0.4714 1.7824 -5.5085 9 6 -0.1014 3.0915 -5.7878 10 6 0.6181 3.8270 -4.8713 11 6 0.9759 3.2480 -3.6550 12 6 1.7420 3.9843 -2.6399 13 8 2.0951 5.1344 -2.8253 14 7 2.0399 3.3342 -1.4908 15 6 2.7524 3.9768 -0.5114 16 1 2.4603 3.8758 0.5234 17 6 3.8514 4.7587 -0.8506 18 7 4.4481 4.5858 -2.0068 19 14 4.4784 6.0549 0.3394 20 1 5.4971 5.4522 1.2362 21 1 5.0896 7.1729 -0.4233 22 1 3.3468 6.5701 1.1515 23 6 1.9955 -0.7659 1.1375 24 6 1.7562 -2.2586 0.9018 25 6 2.2540 -3.0522 2.1115 26 6 2.0141 -4.5448 1.8760 27 6 2.7730 -4.9922 0.6252 28 6 2.2751 -4.1987 -0.5844 29 6 2.5155 -2.7056 -0.3489 30 1 -0.3633 0.5962 -0.8371 31 1 -0.3633 -1.0231 -0.0978 32 1 -0.3634 0.4268 0.9348 33 1 3.0797 1.3445 0.1082 34 1 1.5610 1.9274 0.8309 35 1 -0.4219 0.1730 -4.1069 36 1 -1.0393 1.2220 -6.2365 37 1 -0.3799 3.5368 -6.7315 38 1 0.9028 4.8448 -5.0938 39 1 5.2148 5.1309 -2.2432 40 1 3.0650 -0.5806 1.2366 41 1 1.4870 -0.4561 2.0507 42 1 0.6900 -2.4382 0.7633 43 1 3.3201 -2.8726 2.2501 44 1 1.7131 -2.7338 3.0026 45 1 0.9478 -4.7240 1.7378 46 1 2.3693 -5.1102 2.7377 47 1 2.6024 -6.0557 0.4577 48 1 3.8392 -4.8129 0.7635 49 1 1.2089 -4.3779 -0.7227 50 1 2.8154 -4.5177 -1.4757 51 1 2.1607 -2.1402 -1.2107 52 1 3.5816 -2.5260 -0.2103 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071828124.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:41 Heat of formation + Delta-G solvation = 9.787448 kcal Electronic energy + Delta-G solvation = -32580.521422 eV Core-core repulsion = 28544.328969 eV Total energy + Delta-G solvation = -4036.192453 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 355.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.48714 -38.94522 -37.61996 -37.01579 -35.58341 -33.76101 -31.89755 -31.65453 -30.65061 -30.35213 -29.22675 -27.27608 -26.20960 -25.76990 -23.49244 -22.86441 -22.47992 -21.39884 -20.91644 -20.18733 -19.55941 -18.74156 -17.79222 -16.90391 -15.73782 -15.46025 -15.19456 -15.07795 -14.98441 -14.41149 -14.32395 -14.18469 -13.98761 -13.93953 -13.72311 -13.61313 -13.29021 -12.98335 -12.65527 -12.30140 -12.23651 -12.08418 -11.89330 -11.83592 -11.72720 -11.55504 -11.37594 -11.21930 -11.19510 -11.06560 -11.03985 -10.91841 -10.76191 -10.59340 -10.46936 -10.25653 -9.99191 -9.90387 -9.48247 -8.90559 -8.70590 -8.36864 -8.33946 -7.85341 -7.01659 -6.68283 -4.53133 1.52801 1.68369 3.02771 3.12868 3.16184 3.25447 3.72262 3.92617 4.06886 4.52242 4.69203 4.70329 4.80879 4.84647 4.93404 5.13622 5.15800 5.32278 5.39282 5.41617 5.48685 5.53323 5.55137 5.57711 5.59151 5.66193 5.70753 5.73780 5.84242 5.85947 5.91089 5.94802 6.02511 6.04062 6.08457 6.14061 6.18376 6.20219 6.23762 6.25393 6.38603 6.46182 6.58238 6.64682 6.70870 6.74906 6.83331 7.04449 7.09288 7.16554 7.39223 7.52754 7.53645 7.63646 8.13443 8.47676 8.73783 9.21216 9.51798 10.33640 Molecular weight = 355.20amu Principal moments of inertia in cm(-1) A = 0.008809 B = 0.003626 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.758648 B = 7719.510429 C =10183.011700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.515 5.515 3 C 0.125 3.875 4 C 0.366 3.634 5 N -0.544 5.544 6 C 0.168 3.832 7 C -0.131 4.131 8 C -0.090 4.090 9 C -0.177 4.177 10 C -0.039 4.039 11 C -0.211 4.211 12 C 0.522 3.478 13 O -0.506 6.506 14 N -0.352 5.352 15 C -0.387 4.387 16 H 0.105 0.895 17 C 0.082 3.918 18 N -0.801 5.801 19 Si 0.927 3.073 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.264 1.264 23 C 0.058 3.942 24 C -0.077 4.077 25 C -0.115 4.115 26 C -0.116 4.116 27 C -0.120 4.120 28 C -0.120 4.120 29 C -0.106 4.106 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.008 0.992 33 H 0.104 0.896 34 H 0.054 0.946 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.280 0.720 40 H 0.071 0.929 41 H 0.029 0.971 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.054 0.946 48 H 0.059 0.941 49 H 0.057 0.943 50 H 0.057 0.943 51 H 0.082 0.918 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.962 -13.697 4.600 15.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.238 5.238 3 C -0.005 4.005 4 C 0.103 3.897 5 N -0.271 5.271 6 C 0.052 3.948 7 C -0.151 4.151 8 C -0.110 4.110 9 C -0.196 4.196 10 C -0.058 4.058 11 C -0.219 4.219 12 C 0.316 3.684 13 O -0.380 6.380 14 N -0.056 5.056 15 C -0.514 4.514 16 H 0.123 0.877 17 C -0.135 4.135 18 N -0.429 5.429 19 Si 0.751 3.249 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.188 1.188 23 C -0.070 4.070 24 C -0.096 4.096 25 C -0.153 4.153 26 C -0.154 4.154 27 C -0.157 4.157 28 C -0.158 4.158 29 C -0.143 4.143 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.026 0.974 33 H 0.122 0.878 34 H 0.072 0.928 35 H 0.143 0.857 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.087 0.913 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.075 0.925 51 H 0.101 0.899 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.636 -13.815 3.957 15.100 hybrid contribution 0.408 1.870 0.900 2.115 sum -4.229 -11.945 4.857 13.571 Atomic orbital electron populations 1.22576 0.87128 1.02018 1.00670 1.61598 1.08359 1.12269 1.41617 1.20759 1.01319 0.87398 0.90985 1.22736 0.90838 0.80897 0.95215 1.68479 1.23246 1.32975 1.02407 1.18870 0.94150 0.89947 0.91821 1.20589 1.01353 0.99838 0.93277 1.20972 0.98775 0.94916 0.96323 1.20825 1.03685 0.95264 0.99873 1.20881 0.94062 0.99268 0.91594 1.20862 1.07093 0.96264 0.97653 1.18226 0.81014 0.86568 0.82548 1.90660 1.52774 1.17106 1.77466 1.42244 1.39032 1.08569 1.15728 1.19511 1.10863 1.32196 0.88819 0.87706 1.25398 0.94403 0.97076 0.96629 1.69801 1.16972 1.34627 1.21483 0.85974 0.79017 0.80225 0.79694 1.19841 1.20206 1.18797 1.22197 1.00115 0.93498 0.91213 1.21093 1.00228 0.93341 0.94935 1.21571 1.01254 0.94767 0.97715 1.21495 1.00312 0.96048 0.97537 1.21544 0.99939 0.98950 0.95281 1.21567 1.00840 0.96152 0.97196 1.21471 0.99792 0.94428 0.98632 0.88686 0.92220 0.97382 0.87776 0.92807 0.85739 0.86576 0.86695 0.85985 0.90962 0.91008 0.95269 0.91348 0.92033 0.92450 0.92254 0.92545 0.92714 0.92231 0.92388 0.92450 0.89898 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.95 60.07 0.54 0.89 16 2 N -0.52 -7.90 3.71 -244.36 -0.91 -8.80 16 3 C 0.12 2.23 4.09 -4.97 -0.02 2.21 16 4 C 0.37 8.01 7.18 -154.88 -1.11 6.90 16 5 N -0.54 -11.48 7.10 -8.10 -0.06 -11.53 16 6 C 0.17 3.62 6.63 -84.49 -0.56 3.06 16 7 C -0.13 -2.34 10.03 -39.25 -0.39 -2.74 16 8 C -0.09 -1.44 10.00 -39.54 -0.40 -1.83 16 9 C -0.18 -3.01 10.02 -39.51 -0.40 -3.41 16 10 C -0.04 -0.80 9.68 -39.32 -0.38 -1.18 16 11 C -0.21 -4.97 5.89 -104.77 -0.62 -5.59 16 12 C 0.52 14.00 6.93 -12.47 -0.09 13.91 16 13 O -0.51 -14.88 14.47 5.16 0.07 -14.80 16 14 N -0.35 -8.88 2.66 -59.57 -0.16 -9.04 16 15 C -0.39 -9.73 8.16 -14.88 -0.12 -9.85 16 16 H 0.11 2.39 7.14 -52.49 -0.37 2.02 16 17 C 0.08 2.11 4.35 -17.49 -0.08 2.03 16 18 N -0.80 -22.17 11.75 55.50 0.65 -21.52 16 19 Si 0.93 19.69 29.60 -169.99 -5.03 14.66 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 23 C 0.06 0.73 4.39 -3.83 -0.02 0.71 16 24 C -0.08 -0.86 2.17 -90.62 -0.20 -1.05 16 25 C -0.12 -1.09 5.20 -26.73 -0.14 -1.23 16 26 C -0.12 -1.02 5.92 -26.74 -0.16 -1.17 16 27 C -0.12 -1.08 5.92 -26.74 -0.16 -1.24 16 28 C -0.12 -1.23 5.92 -26.71 -0.16 -1.39 16 29 C -0.11 -1.26 5.07 -26.71 -0.14 -1.40 16 30 H 0.09 1.62 5.59 -51.93 -0.29 1.33 16 31 H 0.06 0.79 6.71 -51.93 -0.35 0.44 16 32 H 0.01 0.11 8.08 -51.93 -0.42 -0.31 16 33 H 0.10 1.90 7.77 -51.93 -0.40 1.50 16 34 H 0.05 0.92 7.58 -51.93 -0.39 0.53 16 35 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 36 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 37 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 38 H 0.12 2.51 7.83 -52.49 -0.41 2.10 16 39 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.07 0.91 7.81 -51.93 -0.41 0.50 16 41 H 0.03 0.35 8.01 -51.92 -0.42 -0.06 16 42 H 0.07 0.79 6.70 -51.93 -0.35 0.44 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 47 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.08 1.19 7.67 -51.93 -0.40 0.79 16 52 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 403.79 15.07 6.09 6.09 Total: -1.00 -29.69 403.79 -12.34 -42.04 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -8.42 Total: 5.28 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -4.58 Total: -2.37 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.47 Total: -50.90 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.07 Total: -14.80 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.03 Total: 14.66 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -29.69 -12.34 -42.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071828124.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.827 kcal (2) G-P(sol) polarization free energy of solvation -29.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds