Wall clock time and date at job start Tue Mar 31 2020 06:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47174 * 2 1 4 4 N 1.46498 * 109.46773 * 239.99648 * 2 1 3 5 5 C 1.34780 * 120.00084 * 88.34949 * 4 2 1 6 6 O 1.21281 * 119.99915 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99970 * 179.97438 * 5 4 2 8 8 S 1.81005 * 109.46963 * 179.97438 * 7 5 4 9 9 C 1.76202 * 99.99881 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00374 * 0.02562 * 9 8 7 11 11 C 1.38799 * 119.99751 * 179.97438 * 9 8 7 12 12 N 1.31631 * 120.00172 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99934 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47405 * 89.99873 * 13 11 9 15 15 H 1.48497 * 109.47277 * 210.00446 * 13 11 9 16 16 H 1.48508 * 109.47077 * 330.00078 * 13 11 9 17 17 C 1.50701 * 109.46645 * 119.99895 * 2 1 3 18 18 C 1.38163 * 120.02589 * 93.38384 * 17 2 1 19 19 C 1.38250 * 120.05143 * 180.02562 * 18 17 2 20 20 C 1.38293 * 120.12223 * 359.97438 * 19 18 17 21 21 C 1.38110 * 120.05349 * 0.02562 * 20 19 18 22 22 C 1.38732 * 120.03168 * 273.39906 * 17 2 1 23 23 O 1.35887 * 120.05482 * 359.95749 * 22 17 2 24 24 C 1.35888 * 118.00143 * 179.97438 * 23 22 17 25 25 C 1.38756 * 120.05596 * 266.37121 * 24 23 22 26 26 C 1.38138 * 119.94237 * 179.73959 * 25 24 23 27 27 C 1.38274 * 120.05590 * 0.50925 * 26 25 24 28 28 C 1.38279 * 120.11473 * 359.76965 * 27 26 25 29 29 C 1.38140 * 120.05633 * 359.97152 * 28 27 26 30 30 H 1.08994 * 109.46928 * 300.00699 * 1 2 3 31 31 H 1.09001 * 109.46761 * 59.99686 * 1 2 3 32 32 H 1.08992 * 109.47551 * 180.02562 * 1 2 3 33 33 H 0.97002 * 119.99888 * 268.34430 * 4 2 1 34 34 H 1.09003 * 109.47361 * 299.99766 * 7 5 4 35 35 H 1.09001 * 109.47380 * 60.00173 * 7 5 4 36 36 H 0.97004 * 120.00154 * 179.97438 * 12 11 9 37 37 H 1.07995 * 119.97340 * 0.03682 * 18 17 2 38 38 H 1.08001 * 119.93819 * 180.02562 * 19 18 17 39 39 H 1.08002 * 119.97055 * 180.27555 * 20 19 18 40 40 H 1.08003 * 120.02991 * 179.97438 * 21 20 19 41 41 H 1.08004 * 120.03315 * 359.97438 * 25 24 23 42 42 H 1.07999 * 119.97360 * 180.28154 * 26 25 24 43 43 H 1.07993 * 119.94286 * 179.74209 * 27 26 25 44 44 H 1.07996 * 119.97019 * 180.02562 * 28 27 26 45 45 H 1.07995 * 120.02464 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.2112 -0.0036 -2.3395 6 8 1.9801 1.1863 -2.3782 7 6 2.7140 -0.7140 -3.5697 8 16 2.8679 0.4704 -4.9298 9 6 3.4565 -0.5983 -6.2011 10 1 3.6109 -1.6474 -5.9962 11 6 3.7208 -0.0921 -7.4661 12 7 3.5312 1.1863 -7.7163 13 14 4.3442 -1.2251 -8.8141 14 1 3.1902 -1.7950 -9.5548 15 1 5.2021 -0.4554 -9.7504 16 1 5.1360 -2.3259 -8.2085 17 6 2.0323 -0.7104 1.2305 18 6 2.3292 -2.0587 1.1776 19 6 2.7895 -2.7111 2.3063 20 6 2.9544 -2.0164 3.4906 21 6 2.6590 -0.6685 3.5488 22 6 2.1965 -0.0112 2.4175 23 8 1.9057 1.3150 2.4719 24 6 2.0813 1.9586 3.6558 25 6 1.0190 2.0924 4.5383 26 6 1.2015 2.7424 5.7435 27 6 2.4389 3.2686 6.0661 28 6 3.4977 3.1416 5.1858 29 6 3.3218 2.4879 3.9817 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 2.2028 -1.6425 -1.1652 34 1 3.6879 -1.1568 -3.3611 35 1 2.0106 -1.4984 -3.8494 36 1 3.7163 1.5402 -8.6003 37 1 2.2019 -2.6034 0.2538 38 1 3.0215 -3.7650 2.2627 39 1 3.3183 -2.5275 4.3697 40 1 2.7875 -0.1264 4.4741 41 1 0.0512 1.6855 4.2850 42 1 0.3762 2.8429 6.4328 43 1 2.5785 3.7800 7.0070 44 1 4.4632 3.5531 5.4404 45 1 4.1489 2.3894 3.2944 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071853708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:57 Heat of formation + Delta-G solvation = -11.550632 kcal Electronic energy + Delta-G solvation = -27805.544845 eV Core-core repulsion = 23879.909556 eV Total energy + Delta-G solvation = -3925.635290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 357.119 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.34254 -39.70168 -38.77958 -37.57569 -35.39247 -32.40587 -31.97465 -31.43377 -30.89949 -30.28767 -29.29067 -28.34062 -25.46559 -24.12116 -23.96330 -23.15393 -21.96359 -21.27919 -20.06543 -18.96622 -17.95527 -17.23661 -16.65641 -16.58667 -16.34471 -16.05227 -15.15739 -15.01907 -14.93631 -14.78178 -14.67594 -14.16107 -14.03755 -13.89349 -13.84199 -13.59332 -13.25549 -12.95029 -12.84860 -12.59352 -12.33947 -12.19851 -12.11197 -11.96644 -11.77242 -11.36476 -11.24534 -11.04479 -11.00435 -10.91970 -10.73575 -9.79237 -9.45783 -9.36572 -9.18669 -9.15760 -9.04753 -8.89917 -8.47178 -8.20205 -6.46866 -6.19241 -3.89433 0.66805 0.88384 1.00355 1.10278 2.78713 3.05588 3.14885 3.23925 3.29360 3.33350 3.38862 3.44461 3.75182 4.22671 4.36678 4.47066 4.47336 4.55877 4.66219 4.72817 4.86427 4.92488 5.06276 5.07130 5.12222 5.15722 5.17291 5.33315 5.35292 5.49220 5.53077 5.59442 5.69122 5.76805 5.86147 5.90316 5.92454 5.96839 6.01770 6.02774 6.16964 6.17693 6.22259 6.25432 6.28780 6.57190 6.72487 7.28726 7.61847 7.74961 8.37572 8.66696 9.25954 10.88135 Molecular weight = 357.12amu Principal moments of inertia in cm(-1) A = 0.016597 B = 0.001978 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.683988 B =14151.006763 C =14947.028735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.190 3.810 3 H 0.103 0.897 4 N -0.735 5.735 5 C 0.533 3.467 6 O -0.515 6.515 7 C -0.153 4.153 8 S -0.059 6.059 9 C -0.535 4.535 10 H 0.072 0.928 11 C 0.073 3.927 12 N -0.867 5.867 13 Si 0.919 3.081 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C -0.109 4.109 18 C -0.080 4.080 19 C -0.146 4.146 20 C -0.086 4.086 21 C -0.191 4.191 22 C 0.133 3.867 23 O -0.254 6.254 24 C 0.086 3.914 25 C -0.124 4.124 26 C -0.108 4.108 27 C -0.119 4.119 28 C -0.107 4.107 29 C -0.126 4.126 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.395 0.605 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.268 0.732 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.234 -4.445 31.295 31.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.085 3.915 3 H 0.121 0.879 4 N -0.391 5.391 5 C 0.320 3.680 6 O -0.388 6.388 7 C -0.304 4.304 8 S 0.167 5.833 9 C -0.683 4.683 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.197 1.197 17 C -0.110 4.110 18 C -0.099 4.099 19 C -0.164 4.164 20 C -0.104 4.104 21 C -0.209 4.209 22 C 0.089 3.911 23 O -0.166 6.166 24 C 0.044 3.956 25 C -0.142 4.142 26 C -0.126 4.126 27 C -0.137 4.137 28 C -0.125 4.125 29 C -0.144 4.144 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.231 0.769 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.145 0.855 44 H 0.148 0.852 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.680 -2.182 30.918 31.213 hybrid contribution 0.843 -2.583 -0.644 2.792 sum -2.838 -4.765 30.275 30.779 Atomic orbital electron populations 1.22118 0.94246 1.02038 1.02819 1.19531 0.94036 0.97168 0.80771 0.87873 1.46207 1.69919 1.12393 1.10560 1.20305 0.76600 0.87482 0.83658 1.90704 1.49374 1.14958 1.83811 1.23536 1.03633 1.04940 0.98292 1.85410 1.86472 1.10883 1.00500 1.22871 1.51265 0.96817 0.97375 0.90942 1.24995 0.95155 0.95532 0.97955 1.70022 1.45700 1.12224 1.22331 0.86169 0.78733 0.79987 0.80611 1.20291 1.20773 1.19713 1.19357 1.04361 0.93915 0.93401 1.20776 0.97660 0.92656 0.98760 1.21071 1.02186 1.00341 0.92832 1.20942 0.97995 0.93365 0.98072 1.21240 1.05739 0.96173 0.97785 1.18833 0.96499 0.81808 0.93926 1.84414 1.81941 1.19438 1.30768 1.18659 0.93732 0.97287 0.85958 1.21405 0.99179 1.00408 0.93246 1.21078 0.97703 0.97667 0.96131 1.21286 0.93030 0.99511 0.99910 1.21099 0.99498 0.98498 0.93366 1.21511 0.96673 0.98914 0.97349 0.91744 0.91313 0.92553 0.76921 0.89245 0.89215 0.92209 0.85197 0.85546 0.85686 0.85404 0.85054 0.85219 0.85477 0.85185 0.84977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.49 37.16 0.35 -1.58 16 2 C 0.19 2.60 2.58 -69.08 -0.18 2.42 16 3 H 0.10 1.71 6.97 -51.93 -0.36 1.34 16 4 N -0.73 -10.55 4.96 -54.93 -0.27 -10.82 16 5 C 0.53 10.29 7.84 -10.99 -0.09 10.20 16 6 O -0.51 -12.01 15.47 5.56 0.09 -11.93 16 7 C -0.15 -3.15 6.16 36.00 0.22 -2.93 16 8 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 9 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 10 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 11 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 12 N -0.87 -26.39 13.22 55.49 0.73 -25.66 16 13 Si 0.92 21.58 29.55 -169.99 -5.02 16.55 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 17 C -0.11 -1.27 5.06 -104.47 -0.53 -1.80 16 18 C -0.08 -0.78 9.24 -39.60 -0.37 -1.14 16 19 C -0.15 -1.23 10.04 -39.56 -0.40 -1.63 16 20 C -0.09 -0.72 10.04 -39.61 -0.40 -1.12 16 21 C -0.19 -1.84 9.15 -39.43 -0.36 -2.21 16 22 C 0.13 1.52 6.64 -39.20 -0.26 1.26 16 23 O -0.25 -3.10 9.09 -3.54 -0.03 -3.13 16 24 C 0.09 0.87 4.02 -39.20 -0.16 0.72 16 25 C -0.12 -1.05 9.99 -39.43 -0.39 -1.44 16 26 C -0.11 -0.71 10.04 -39.60 -0.40 -1.11 16 27 C -0.12 -0.74 10.04 -39.55 -0.40 -1.14 16 28 C -0.11 -0.75 10.04 -39.60 -0.40 -1.15 16 29 C -0.13 -1.15 9.69 -39.43 -0.38 -1.53 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.39 4.45 6.31 -40.82 -0.26 4.19 16 34 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 35 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 36 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.13 1.04 6.13 -52.49 -0.32 0.71 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.13 1.13 6.64 -52.48 -0.35 0.78 16 41 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 42 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 43 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 44 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 398.52 15.07 6.01 6.01 Total: -1.00 -35.50 398.52 -10.55 -46.05 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.91 Total: 4.01 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -3.93 Total: -17.24 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.46 Total: -36.48 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.05 Total: -15.06 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.50 -10.55 -46.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071853708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.504 kcal (2) G-P(sol) polarization free energy of solvation -35.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds