Wall clock time and date at job start Tue Mar 31 2020 06:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47174 * 2 1 4 4 N 1.46498 * 109.46773 * 239.99648 * 2 1 3 5 5 C 1.34780 * 120.00084 * 88.34949 * 4 2 1 6 6 O 1.21281 * 119.99915 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99970 * 179.97438 * 5 4 2 8 8 S 1.81005 * 109.46963 * 179.97438 * 7 5 4 9 9 C 1.76202 * 99.99881 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00374 * 0.02562 * 9 8 7 11 11 C 1.38799 * 119.99751 * 179.97438 * 9 8 7 12 12 N 1.31631 * 120.00172 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99934 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47405 * 89.99873 * 13 11 9 15 15 H 1.48497 * 109.47277 * 210.00446 * 13 11 9 16 16 H 1.48508 * 109.47077 * 330.00078 * 13 11 9 17 17 C 1.50701 * 109.46645 * 119.99895 * 2 1 3 18 18 C 1.38163 * 120.02589 * 93.38384 * 17 2 1 19 19 C 1.38250 * 120.05143 * 180.02562 * 18 17 2 20 20 C 1.38293 * 120.12223 * 359.97438 * 19 18 17 21 21 C 1.38110 * 120.05349 * 0.02562 * 20 19 18 22 22 C 1.38732 * 120.03168 * 273.39906 * 17 2 1 23 23 O 1.35887 * 120.05482 * 359.95749 * 22 17 2 24 24 C 1.35888 * 118.00143 * 179.97438 * 23 22 17 25 25 C 1.38756 * 120.05596 * 266.37121 * 24 23 22 26 26 C 1.38138 * 119.94237 * 179.73959 * 25 24 23 27 27 C 1.38274 * 120.05590 * 0.50925 * 26 25 24 28 28 C 1.38279 * 120.11473 * 359.76965 * 27 26 25 29 29 C 1.38140 * 120.05633 * 359.97152 * 28 27 26 30 30 H 1.08994 * 109.46928 * 300.00699 * 1 2 3 31 31 H 1.09001 * 109.46761 * 59.99686 * 1 2 3 32 32 H 1.08992 * 109.47551 * 180.02562 * 1 2 3 33 33 H 0.97002 * 119.99888 * 268.34430 * 4 2 1 34 34 H 1.09003 * 109.47361 * 299.99766 * 7 5 4 35 35 H 1.09001 * 109.47380 * 60.00173 * 7 5 4 36 36 H 0.97004 * 120.00154 * 179.97438 * 12 11 9 37 37 H 1.07995 * 119.97340 * 0.03682 * 18 17 2 38 38 H 1.08001 * 119.93819 * 180.02562 * 19 18 17 39 39 H 1.08002 * 119.97055 * 180.27555 * 20 19 18 40 40 H 1.08003 * 120.02991 * 179.97438 * 21 20 19 41 41 H 1.08004 * 120.03315 * 359.97438 * 25 24 23 42 42 H 1.07999 * 119.97360 * 180.28154 * 26 25 24 43 43 H 1.07993 * 119.94286 * 179.74209 * 27 26 25 44 44 H 1.07996 * 119.97019 * 180.02562 * 28 27 26 45 45 H 1.07995 * 120.02464 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.2112 -0.0036 -2.3395 6 8 1.9801 1.1863 -2.3782 7 6 2.7140 -0.7140 -3.5697 8 16 2.8679 0.4704 -4.9298 9 6 3.4565 -0.5983 -6.2011 10 1 3.6109 -1.6474 -5.9962 11 6 3.7208 -0.0921 -7.4661 12 7 3.5312 1.1863 -7.7163 13 14 4.3442 -1.2251 -8.8141 14 1 3.1902 -1.7950 -9.5548 15 1 5.2021 -0.4554 -9.7504 16 1 5.1360 -2.3259 -8.2085 17 6 2.0323 -0.7104 1.2305 18 6 2.3292 -2.0587 1.1776 19 6 2.7895 -2.7111 2.3063 20 6 2.9544 -2.0164 3.4906 21 6 2.6590 -0.6685 3.5488 22 6 2.1965 -0.0112 2.4175 23 8 1.9057 1.3150 2.4719 24 6 2.0813 1.9586 3.6558 25 6 1.0190 2.0924 4.5383 26 6 1.2015 2.7424 5.7435 27 6 2.4389 3.2686 6.0661 28 6 3.4977 3.1416 5.1858 29 6 3.3218 2.4879 3.9817 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 2.2028 -1.6425 -1.1652 34 1 3.6879 -1.1568 -3.3611 35 1 2.0106 -1.4984 -3.8494 36 1 3.7163 1.5402 -8.6003 37 1 2.2019 -2.6034 0.2538 38 1 3.0215 -3.7650 2.2627 39 1 3.3183 -2.5275 4.3697 40 1 2.7875 -0.1264 4.4741 41 1 0.0512 1.6855 4.2850 42 1 0.3762 2.8429 6.4328 43 1 2.5785 3.7800 7.0070 44 1 4.4632 3.5531 5.4404 45 1 4.1489 2.3894 3.2944 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071853708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:56 Heat of formation + Delta-G solvation = -32.319889 kcal Electronic energy + Delta-G solvation = -27806.445468 eV Core-core repulsion = 23879.909556 eV Total energy + Delta-G solvation = -3926.535912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 357.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.10927 -40.87487 -39.75651 -38.30787 -36.60327 -34.58278 -33.19771 -32.00628 -31.62805 -31.15825 -30.27475 -29.61952 -27.66066 -24.98391 -24.77444 -23.73004 -22.76073 -22.25000 -21.34544 -20.02757 -19.56123 -18.29556 -17.74186 -17.53103 -17.06240 -17.03028 -16.87849 -16.46947 -16.23844 -15.85277 -15.58460 -15.33811 -15.07457 -14.84315 -14.63491 -14.49566 -14.45210 -14.35311 -14.13266 -13.51532 -13.43503 -13.22563 -13.16385 -12.92354 -12.89005 -12.77617 -12.65305 -12.59524 -12.19336 -11.86266 -11.84892 -11.70887 -11.14077 -10.99056 -10.29425 -10.27441 -10.04589 -9.89159 -9.77229 -9.25046 -8.67038 -8.34277 -6.12681 0.06049 0.23414 0.32142 0.37106 1.26080 1.42863 1.46545 1.57230 1.58901 2.12650 2.21187 2.27863 2.70909 2.77699 2.99724 3.31414 3.48598 3.82147 3.89985 3.90980 3.92596 4.04151 4.14613 4.19643 4.22314 4.29515 4.32532 4.40363 4.45199 4.49120 4.49218 4.50354 4.66613 4.82574 4.87792 4.94214 4.98907 5.16187 5.20921 5.34046 5.36042 5.37078 5.42153 5.47553 5.48394 5.55679 5.72587 5.92002 6.20195 6.44763 6.56364 7.06710 7.21098 8.74972 Molecular weight = 357.12amu Principal moments of inertia in cm(-1) A = 0.016597 B = 0.001978 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.683988 B =14151.006763 C =14947.028735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.195 3.805 3 H 0.066 0.934 4 N -0.708 5.708 5 C 0.535 3.465 6 O -0.564 6.564 7 C -0.128 4.128 8 S -0.152 6.152 9 C -0.545 4.545 10 H 0.084 0.916 11 C 0.011 3.989 12 N -0.912 5.912 13 Si 1.000 3.000 14 H -0.267 1.267 15 H -0.278 1.278 16 H -0.257 1.257 17 C -0.130 4.130 18 C -0.083 4.083 19 C -0.143 4.143 20 C -0.081 4.081 21 C -0.194 4.194 22 C 0.116 3.884 23 O -0.278 6.278 24 C 0.060 3.940 25 C -0.136 4.136 26 C -0.104 4.104 27 C -0.115 4.115 28 C -0.107 4.107 29 C -0.145 4.145 30 H 0.070 0.930 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.414 0.586 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.271 0.729 37 H 0.147 0.853 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.132 0.868 41 H 0.133 0.867 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.151 0.849 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.687 -7.458 33.545 34.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.090 3.910 3 H 0.084 0.916 4 N -0.364 5.364 5 C 0.321 3.679 6 O -0.442 6.442 7 C -0.279 4.279 8 S 0.075 5.925 9 C -0.693 4.693 10 H 0.102 0.898 11 C -0.193 4.193 12 N -0.548 5.548 13 Si 0.822 3.178 14 H -0.193 1.193 15 H -0.204 1.204 16 H -0.181 1.181 17 C -0.131 4.131 18 C -0.102 4.102 19 C -0.161 4.161 20 C -0.099 4.099 21 C -0.213 4.213 22 C 0.073 3.927 23 O -0.191 6.191 24 C 0.018 3.982 25 C -0.154 4.154 26 C -0.122 4.122 27 C -0.133 4.133 28 C -0.125 4.125 29 C -0.164 4.164 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.253 0.747 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.080 0.920 37 H 0.165 0.835 38 H 0.174 0.826 39 H 0.171 0.829 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.174 0.826 43 H 0.176 0.824 44 H 0.169 0.831 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.138 -5.243 33.216 33.773 hybrid contribution 0.659 -1.643 -1.121 2.095 sum -2.479 -6.886 32.095 32.919 Atomic orbital electron populations 1.22037 0.93426 1.03075 1.01902 1.19413 0.94641 0.95619 0.81306 0.91600 1.45930 1.68072 1.13113 1.09299 1.20138 0.76396 0.86837 0.84503 1.90695 1.51795 1.17059 1.84613 1.23366 1.05555 1.03168 0.95818 1.85634 1.86931 1.15519 1.04448 1.23207 1.51220 0.97152 0.97704 0.89761 1.26162 0.95090 0.97255 1.00823 1.70194 1.46950 1.14566 1.23128 0.84929 0.78346 0.77751 0.76790 1.19267 1.20363 1.18095 1.19234 1.06578 0.94904 0.92364 1.21019 0.97254 0.91737 1.00151 1.21423 1.00905 1.01676 0.92081 1.21341 0.96578 0.92726 0.99235 1.21362 1.05645 0.96926 0.97358 1.19076 0.97196 0.81839 0.94610 1.84383 1.82284 1.20139 1.32263 1.18949 0.94831 0.98292 0.86090 1.21540 0.98793 1.01191 0.93902 1.21428 0.98822 0.96406 0.95552 1.21673 0.92344 0.98617 1.00668 1.21388 1.00887 0.97682 0.92499 1.21568 0.96197 1.00233 0.98378 0.91079 0.93784 0.90403 0.74680 0.87123 0.86834 0.92021 0.83523 0.82604 0.82862 0.84987 0.84953 0.82584 0.82449 0.83144 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.49 71.98 0.68 -3.09 16 2 C 0.19 5.53 2.58 44.25 0.11 5.64 16 3 H 0.07 2.38 6.97 -2.39 -0.02 2.37 16 4 N -0.71 -20.13 4.96 -446.09 -2.21 -22.35 16 5 C 0.54 21.03 7.84 87.66 0.69 21.72 16 6 O -0.56 -27.80 15.47 -3.03 -0.05 -27.85 16 7 C -0.13 -5.21 6.16 71.23 0.44 -4.77 16 8 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 9 C -0.55 -31.48 9.50 67.95 0.65 -30.83 16 10 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 11 C 0.01 0.65 5.49 84.86 0.47 1.12 16 12 N -0.91 -56.81 13.22 21.65 0.29 -56.52 16 13 Si 1.00 44.00 29.55 68.60 2.03 46.03 16 14 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 15 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 16 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 17 C -0.13 -3.00 5.06 -19.76 -0.10 -3.10 16 18 C -0.08 -1.44 9.24 22.25 0.21 -1.24 16 19 C -0.14 -1.96 10.04 22.29 0.22 -1.73 16 20 C -0.08 -1.15 10.04 22.25 0.22 -0.92 16 21 C -0.19 -3.62 9.15 22.37 0.20 -3.41 16 22 C 0.12 2.73 6.64 22.52 0.15 2.88 16 23 O -0.28 -7.35 9.09 -35.59 -0.32 -7.68 16 24 C 0.06 1.29 4.02 22.52 0.09 1.38 16 25 C -0.14 -2.31 9.99 22.37 0.22 -2.09 16 26 C -0.10 -1.21 10.04 22.25 0.22 -0.98 16 27 C -0.12 -1.18 10.04 22.29 0.22 -0.96 16 28 C -0.11 -1.40 10.04 22.26 0.22 -1.18 16 29 C -0.15 -2.78 9.69 22.37 0.22 -2.56 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.41 8.52 6.31 -92.71 -0.59 7.94 16 34 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 35 H 0.11 4.09 8.14 -2.40 -0.02 4.07 16 36 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 37 H 0.15 1.89 6.13 -2.91 -0.02 1.88 16 38 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.13 2.28 6.64 -2.91 -0.02 2.26 16 41 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 42 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 43 H 0.16 0.65 8.06 -2.91 -0.02 0.63 16 44 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 45 H 0.12 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -81.93 398.52 4.14 -77.79 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.43 Total: 24.54 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: 5.14 Total: -24.14 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -1.93 Total: -78.87 kcal Atomic # 8 Polarization: -35.16 SS G_CDS: -0.37 Total: -35.53 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -81.93 4.14 -77.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071853708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.467 kcal (2) G-P(sol) polarization free energy of solvation -81.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds