Wall clock time and date at job start Tue Mar 31 2020 06:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38272 * 119.96951 * 2 1 4 4 C 1.38177 * 120.02452 * 179.97438 * 3 2 1 5 5 C 1.38487 * 119.97000 * 0.02562 * 4 3 2 6 6 F 1.35103 * 120.01850 * 179.97438 * 5 4 3 7 7 C 1.38433 * 119.95235 * 359.97438 * 5 4 3 8 8 S 1.76192 * 120.01254 * 180.02562 * 7 5 4 9 9 O 1.42102 * 106.40496 * 181.45848 * 8 7 5 10 10 O 1.42100 * 106.40662 * 48.53924 * 8 7 5 11 11 N 1.65603 * 107.21860 * 294.99606 * 8 7 5 12 12 C 1.46501 * 119.99516 * 95.69295 * 11 8 7 13 13 C 1.50704 * 109.47310 * 94.25134 * 12 11 8 14 14 H 1.07999 * 120.00025 * 335.28039 * 13 12 11 15 15 C 1.37874 * 119.99718 * 155.28104 * 13 12 11 16 16 N 1.31516 * 120.00643 * 5.52565 * 15 13 12 17 17 Si 1.86810 * 119.99660 * 185.52809 * 15 13 12 18 18 H 1.48494 * 109.46943 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.46864 * 60.00136 * 17 15 13 20 20 H 1.48505 * 109.46783 * 299.99827 * 17 15 13 21 21 C 1.46492 * 120.00014 * 275.68989 * 11 8 7 22 22 C 1.53005 * 109.47255 * 245.46114 * 21 11 8 23 23 H 1.08997 * 110.43689 * 303.02774 * 22 21 11 24 24 C 1.54808 * 110.48541 * 180.33728 * 22 21 11 25 25 C 1.55003 * 102.08875 * 220.44122 * 24 22 21 26 26 O 1.44378 * 103.49176 * 37.02846 * 25 24 22 27 27 C 1.43745 * 106.97298 * 319.93667 * 26 25 24 28 28 C 1.38217 * 119.97712 * 180.27587 * 2 1 3 29 29 H 1.09006 * 109.46701 * 90.00433 * 1 2 3 30 30 H 1.08995 * 109.46708 * 209.99850 * 1 2 3 31 31 H 1.08995 * 109.47378 * 329.99919 * 1 2 3 32 32 H 1.07995 * 119.98980 * 359.97438 * 3 2 1 33 33 H 1.07996 * 120.01562 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.47255 * 334.24494 * 12 11 8 35 35 H 1.09004 * 109.46791 * 214.25166 * 12 11 8 36 36 H 0.97005 * 119.99556 * 355.08620 * 16 15 13 37 37 H 1.08998 * 109.47673 * 5.46396 * 21 11 8 38 38 H 1.09000 * 109.47242 * 125.46323 * 21 11 8 39 39 H 1.08998 * 110.91257 * 338.64028 * 24 22 21 40 40 H 1.09007 * 110.90919 * 102.25022 * 24 22 21 41 41 H 1.08991 * 110.61775 * 278.52345 * 25 24 22 42 42 H 1.08998 * 110.74823 * 155.59226 * 25 24 22 43 43 H 1.08994 * 109.88141 * 267.08967 * 27 26 25 44 44 H 1.09001 * 109.88217 * 145.93587 * 27 26 25 45 45 H 1.08000 * 119.98734 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5795 1.1992 0.0005 5 6 4.2725 0.0001 0.0005 6 9 5.6235 0.0003 0.0005 7 6 3.5799 -1.1985 0.0005 8 16 4.4599 -2.7249 0.0012 9 8 3.4798 -3.7532 -0.0336 10 8 5.4419 -2.6216 1.0231 11 7 5.2843 -2.8160 -1.4321 12 6 6.6865 -2.3967 -1.4984 13 6 7.5791 -3.5954 -1.3044 14 1 7.2140 -4.4595 -0.7692 15 6 8.8617 -3.5888 -1.8100 16 7 9.3440 -2.4987 -2.3658 17 14 9.9146 -5.1284 -1.7058 18 1 11.2417 -4.8627 -2.3167 19 1 9.2466 -6.2352 -2.4364 20 1 10.0922 -5.5111 -0.2820 21 6 4.6116 -3.3160 -2.6335 22 6 5.2598 -4.6311 -3.0711 23 1 6.3272 -4.4909 -3.2418 24 6 4.5713 -5.1767 -4.3458 25 6 4.5033 -6.6972 -4.0525 26 8 4.2318 -6.7551 -2.6357 27 6 5.0220 -5.7274 -2.0146 28 6 2.1977 -1.1973 -0.0058 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6571 2.1327 -0.0004 33 1 4.1189 2.1348 0.0010 34 1 6.8845 -1.6655 -0.7148 35 1 6.8861 -1.9489 -2.4720 36 1 8.7748 -1.7223 -2.4844 37 1 3.5572 -3.4856 -2.4157 38 1 4.7037 -2.5817 -3.4337 39 1 3.5716 -4.7571 -4.4579 40 1 5.1766 -4.9779 -5.2303 41 1 5.4560 -7.1750 -4.2807 42 1 3.6963 -7.1637 -4.6174 43 1 5.9762 -6.1403 -1.6877 44 1 4.4847 -5.3107 -1.1627 45 1 1.6571 -2.1322 -0.0098 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071856546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:49 Heat of formation + Delta-G solvation = -139.083348 kcal Electronic energy + Delta-G solvation = -31829.806790 eV Core-core repulsion = 27467.872043 eV Total energy + Delta-G solvation = -4361.934748 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 357.124 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.06802 -39.33451 -39.07771 -36.75776 -36.03008 -35.34224 -32.96565 -32.72740 -31.60888 -31.56131 -28.90060 -26.99281 -26.86399 -24.58361 -23.71720 -22.81955 -22.10783 -21.92074 -19.88289 -18.58294 -18.04764 -17.33535 -17.13901 -16.58351 -16.50895 -15.94771 -15.63443 -15.62553 -15.06016 -14.68701 -14.45698 -14.29369 -13.96953 -13.92731 -13.71994 -13.68374 -13.43568 -12.82583 -12.56693 -12.54283 -12.41952 -12.23214 -12.06789 -11.75885 -11.72517 -11.62605 -11.44812 -11.23911 -11.20928 -10.97493 -10.79235 -10.60180 -10.53139 -10.34466 -10.13232 -9.94731 -9.63308 -9.37339 -9.14304 -8.78447 -8.43242 -8.00574 -6.44821 -4.13954 0.49168 0.84630 0.93707 3.07875 3.41339 3.43880 3.51205 3.61972 3.98716 4.10200 4.36762 4.41639 4.48440 4.48765 4.77948 4.88460 4.95080 5.00791 5.12187 5.21368 5.25246 5.31281 5.31935 5.47200 5.50698 5.58459 5.65154 5.66687 5.71633 5.77602 5.87101 5.90703 5.98332 6.09327 6.11415 6.17770 6.26262 6.41865 6.58806 6.62262 6.82220 6.92852 7.25743 7.31513 7.42215 7.97008 8.38795 8.74825 9.51195 10.92442 Molecular weight = 357.12amu Principal moments of inertia in cm(-1) A = 0.010907 B = 0.004718 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.569055 B = 5933.871215 C = 7546.587203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.124 4.124 3 C -0.045 4.045 4 C -0.172 4.172 5 C 0.194 3.806 6 F -0.112 7.112 7 C -0.712 4.712 8 S 2.675 3.325 9 O -0.964 6.964 10 O -0.935 6.935 11 N -0.975 5.975 12 C 0.233 3.767 13 C -0.594 4.594 14 H 0.057 0.943 15 C 0.025 3.975 16 N -0.905 5.905 17 Si 1.060 2.940 18 H -0.282 1.282 19 H -0.286 1.286 20 H -0.285 1.285 21 C 0.142 3.858 22 C -0.130 4.130 23 H 0.116 0.884 24 C -0.151 4.151 25 C 0.047 3.953 26 O -0.384 6.384 27 C 0.048 3.952 28 C 0.000 4.000 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.040 0.960 35 H 0.035 0.965 36 H 0.269 0.731 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.092 0.908 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.390 5.411 -1.564 17.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.125 4.125 3 C -0.064 4.064 4 C -0.192 4.192 5 C 0.173 3.827 6 F -0.090 7.090 7 C -0.795 4.795 8 S 2.762 3.238 9 O -0.954 6.954 10 O -0.925 6.925 11 N -0.815 5.815 12 C 0.112 3.888 13 C -0.635 4.635 14 H 0.075 0.925 15 C -0.180 4.180 16 N -0.541 5.541 17 Si 0.888 3.112 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.211 1.211 21 C 0.015 3.985 22 C -0.150 4.150 23 H 0.134 0.866 24 C -0.189 4.189 25 C -0.030 4.030 26 O -0.304 6.304 27 C -0.029 4.029 28 C -0.019 4.019 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.155 0.845 33 H 0.162 0.838 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.103 0.897 43 H 0.080 0.920 44 H 0.110 0.890 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -14.988 4.145 -1.086 15.588 hybrid contribution -1.229 1.594 -0.067 2.014 sum -16.217 5.739 -1.153 17.241 Atomic orbital electron populations 1.20789 0.90058 1.03277 1.02782 1.20086 0.96894 0.92923 1.02568 1.21144 0.93084 0.98191 0.93950 1.21249 0.95181 0.97195 1.05537 1.17143 0.77257 0.93460 0.94794 1.91671 1.27684 1.97156 1.92506 1.31619 1.07236 1.21080 1.19559 1.02718 0.73042 0.73727 0.74291 1.93516 1.62281 1.52759 1.86871 1.93625 1.57896 1.86136 1.54844 1.57698 1.22094 1.77519 1.24162 1.19400 0.74756 0.96506 0.98143 1.22265 1.00115 1.02817 1.38275 0.92504 1.25735 0.96257 1.02315 0.93726 1.70829 1.37854 1.03238 1.42215 0.83666 0.76251 0.74457 0.76851 1.20695 1.21193 1.21104 1.21162 0.94932 0.94842 0.87519 1.22919 1.03685 0.94855 0.93562 0.86564 1.23175 1.01191 0.96079 0.98493 1.23466 1.00546 0.95768 0.83242 1.88819 1.66935 1.55763 1.18837 1.23402 0.95598 0.87343 0.96531 1.20785 0.90911 0.99321 0.90876 0.90777 0.90980 0.91234 0.84451 0.83848 0.94275 0.94656 0.92021 0.90787 0.91672 0.90936 0.90388 0.92504 0.89739 0.91997 0.88999 0.83198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.01 0.36 -0.46 16 2 C -0.12 -1.33 5.88 -104.61 -0.62 -1.95 16 3 C -0.05 -0.46 9.70 -39.59 -0.38 -0.84 16 4 C -0.17 -2.12 10.03 -39.51 -0.40 -2.52 16 5 C 0.19 3.16 7.21 -39.42 -0.28 2.88 16 6 F -0.11 -2.12 14.34 2.25 0.03 -2.09 16 7 C -0.71 -11.83 5.91 -39.52 -0.23 -12.07 16 8 S 2.67 53.90 5.10 -107.50 -0.55 53.35 16 9 O -0.96 -19.38 13.69 -57.17 -0.78 -20.17 16 10 O -0.94 -22.45 16.23 -57.17 -0.93 -23.38 16 11 N -0.97 -19.82 2.61 -115.66 -0.30 -20.12 16 12 C 0.23 5.56 4.71 -5.19 -0.02 5.54 16 13 C -0.59 -15.73 7.32 -34.44 -0.25 -15.98 16 14 H 0.06 1.54 7.12 -52.49 -0.37 1.16 16 15 C 0.02 0.68 5.45 -17.82 -0.10 0.58 16 16 N -0.90 -25.82 13.63 55.43 0.76 -25.06 16 17 Si 1.06 24.57 29.91 -169.99 -5.08 19.49 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.14 2.46 4.89 -4.04 -0.02 2.44 16 22 C -0.13 -2.35 2.59 -89.09 -0.23 -2.58 16 23 H 0.12 2.41 6.53 -51.93 -0.34 2.07 16 24 C -0.15 -2.16 6.71 -24.72 -0.17 -2.32 16 25 C 0.05 0.69 7.72 38.22 0.29 0.98 16 26 O -0.38 -7.19 11.52 -35.23 -0.41 -7.60 16 27 C 0.05 0.95 6.92 37.73 0.26 1.21 16 28 C 0.00 0.00 9.20 -39.59 -0.36 -0.36 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 31 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.04 0.99 5.58 -51.93 -0.29 0.70 16 35 H 0.04 0.85 6.91 -51.93 -0.36 0.49 16 36 H 0.27 7.55 6.78 -40.82 -0.28 7.28 16 37 H 0.07 1.17 7.18 -51.93 -0.37 0.79 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 0.92 7.87 -51.93 -0.41 0.51 16 40 H 0.08 1.00 8.14 -51.92 -0.42 0.57 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.06 1.30 7.73 -51.93 -0.40 0.89 16 44 H 0.09 1.94 5.11 -51.93 -0.27 1.67 16 45 H 0.15 1.85 7.33 -52.49 -0.38 1.47 16 LS Contribution 373.74 15.07 5.63 5.63 Total: -1.00 -32.93 373.74 -9.85 -42.78 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.07 Total: 2.62 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: -2.15 Total: -25.46 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.45 Total: -45.18 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -2.12 Total: -51.15 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.03 Total: -2.09 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.08 Total: 19.49 kcal Atomic # 16 Polarization: 53.90 SS G_CDS: -0.55 Total: 53.35 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.93 -9.85 -42.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071856546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.300 kcal (2) G-P(sol) polarization free energy of solvation -32.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds