Wall clock time and date at job start Tue Mar 31 2020 05:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.50581 * 2 1 4 4 C 1.53046 * 109.48981 * 239.94206 * 2 1 3 5 5 N 1.46958 * 109.36661 * 181.62917 * 4 2 1 6 6 C 1.46897 * 111.00578 * 183.18830 * 5 4 2 7 7 C 1.52999 * 109.47284 * 170.31622 * 6 5 4 8 8 H 1.08994 * 109.46645 * 57.66277 * 7 6 5 9 9 C 1.47198 * 109.47432 * 297.66320 * 7 6 5 10 10 N 5.43848 * 147.10231 * 297.69037 * 2 1 3 11 11 C 1.53000 * 109.46892 * 177.65920 * 7 6 5 12 12 C 1.50702 * 109.47122 * 185.00348 * 11 7 6 13 13 H 1.08002 * 119.99938 * 359.97438 * 12 11 7 14 14 C 1.37872 * 120.00088 * 180.02562 * 12 11 7 15 15 N 1.31515 * 119.99978 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99919 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47161 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47011 * 120.00134 * 16 14 12 19 19 H 1.48500 * 109.47178 * 239.99808 * 16 14 12 20 20 C 1.46963 * 110.87880 * 59.32123 * 5 4 2 21 21 C 1.53055 * 109.36258 * 300.68452 * 20 5 4 22 22 N 1.46953 * 109.36698 * 58.40149 * 21 20 5 23 23 C 1.39088 * 110.99886 * 176.81312 * 22 21 20 24 24 C 1.40874 * 119.58925 * 266.81410 * 23 22 21 25 25 C 1.35899 * 120.09672 * 179.97438 * 24 23 22 26 26 C 1.40798 * 119.14186 * 359.97438 * 25 24 23 27 27 N 1.32361 * 133.78144 * 180.02562 * 26 25 24 28 28 N 1.28751 * 109.23391 * 179.97438 * 27 26 25 29 29 C 1.31032 * 110.16201 * 359.97438 * 28 27 26 30 30 N 1.34983 * 107.69193 * 0.02562 * 29 28 27 31 31 N 1.31251 * 119.59006 * 86.53752 * 23 22 21 32 32 H 1.09000 * 109.47186 * 296.56295 * 1 2 3 33 33 H 1.09000 * 109.47166 * 56.56499 * 1 2 3 34 34 H 1.09002 * 109.46764 * 176.55995 * 1 2 3 35 35 H 1.08997 * 109.49422 * 301.59835 * 4 2 1 36 36 H 1.09002 * 109.49126 * 61.66450 * 4 2 1 37 37 H 1.08995 * 109.47321 * 290.32391 * 6 5 4 38 38 H 1.09005 * 109.46391 * 50.31991 * 6 5 4 39 39 H 1.08996 * 109.47349 * 305.00222 * 11 7 6 40 40 H 1.09001 * 109.47128 * 65.00250 * 11 7 6 41 41 H 0.97004 * 120.00060 * 180.02562 * 15 14 12 42 42 H 1.09000 * 109.49002 * 180.71339 * 20 5 4 43 43 H 1.08996 * 109.48614 * 60.64914 * 20 5 4 44 44 H 1.09001 * 109.48539 * 298.42682 * 21 20 5 45 45 H 1.09005 * 109.50090 * 178.37803 * 21 20 5 46 46 H 1.08000 * 119.94853 * 359.95084 * 24 23 22 47 47 H 1.08006 * 120.42951 * 179.97438 * 25 24 23 48 48 H 1.08003 * 126.15141 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0407 -0.7226 -1.2487 5 7 3.5097 -0.7553 -1.2264 6 6 4.0413 -1.3752 -2.4475 7 6 5.5573 -1.1765 -2.5020 8 1 6.0121 -1.6046 -1.6089 9 6 5.8616 0.2623 -2.5661 10 7 6.0964 1.3726 -2.6156 11 6 6.1185 -1.8723 -3.7437 12 6 7.6228 -1.7821 -3.7334 13 1 8.1280 -1.2785 -2.9225 14 6 8.3540 -2.3416 -4.7596 15 7 7.7388 -2.9544 -5.7473 16 14 10.2186 -2.2292 -4.7471 17 1 10.6620 -1.4943 -3.5354 18 1 10.7968 -3.5970 -4.7364 19 1 10.6791 -1.5066 -5.9600 20 6 4.0000 -1.4491 -0.0272 21 6 3.4893 -0.7264 1.2216 22 7 2.0203 -0.6938 1.1992 23 6 1.5171 -0.1068 2.3554 24 6 1.1694 -0.9186 3.4530 25 6 0.6773 -0.3558 4.5879 26 6 0.5222 1.0423 4.6485 27 7 0.0843 1.8757 5.5789 28 7 0.1444 3.0812 5.1307 29 6 0.6172 3.0857 3.9087 30 7 0.8710 1.8059 3.5623 31 7 1.3772 1.1970 2.4122 32 1 -0.3633 0.4595 0.9192 33 1 -0.3633 0.5662 -0.8576 34 1 -0.3633 -1.0259 -0.0617 35 1 1.6545 -1.7418 -1.2626 36 1 1.7022 -0.1931 -2.1393 37 1 3.8145 -2.4413 -2.4421 38 1 3.5822 -0.9105 -3.3202 39 1 5.8173 -2.9198 -3.7406 40 1 5.7315 -1.3856 -4.6390 41 1 8.2532 -3.3484 -6.4692 42 1 5.0900 -1.4490 -0.0272 43 1 3.6361 -2.4765 -0.0272 44 1 3.8756 0.2928 1.2354 45 1 3.8278 -1.2557 2.1123 46 1 1.2938 -1.9897 3.3923 47 1 0.4087 -0.9731 5.4325 48 1 0.7746 3.9565 3.2896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071876897.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:12 Heat of formation + Delta-G solvation = 192.434574 kcal Electronic energy + Delta-G solvation = -30996.403914 eV Core-core repulsion = 26896.884042 eV Total energy + Delta-G solvation = -4099.519872 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 355.182 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.74120 -40.88704 -38.74768 -36.96969 -35.30763 -34.40928 -33.66872 -32.99618 -32.12915 -31.15506 -30.47528 -28.41959 -27.33398 -25.64944 -24.91054 -23.73862 -23.42124 -22.71795 -22.02477 -21.54561 -20.30440 -19.29342 -18.13937 -17.30599 -17.13077 -16.79737 -16.54288 -15.92481 -15.68850 -15.44609 -15.01874 -14.78931 -14.57055 -14.50195 -14.28821 -13.95060 -13.61510 -13.32540 -12.98394 -12.73933 -12.60978 -12.52257 -12.42989 -12.21807 -12.04108 -11.89131 -11.69979 -11.58954 -11.41170 -11.35427 -11.29537 -11.16762 -11.12193 -10.89296 -10.73261 -10.55519 -10.44162 -10.21834 -9.62143 -9.32041 -9.27428 -9.11984 -8.52501 -8.40590 -6.15870 -4.19176 -0.21868 0.60236 1.21042 2.16314 2.58273 2.83350 3.23848 3.32636 3.36555 3.48890 3.54585 3.62406 3.71318 3.79092 4.06493 4.28277 4.34809 4.36182 4.54291 4.64177 4.72328 4.82935 4.90963 4.94924 5.00971 5.03614 5.14934 5.17007 5.21986 5.22608 5.27632 5.38481 5.43553 5.46527 5.49830 5.56575 5.62986 5.68100 5.74171 5.86272 5.91288 6.16504 6.25510 6.36960 6.43430 6.91323 6.94037 6.95355 7.34781 7.44957 7.79253 7.97262 8.16091 8.51484 8.85698 9.46800 10.94943 Molecular weight = 355.18amu Principal moments of inertia in cm(-1) A = 0.020853 B = 0.001981 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.393665 B =14128.593616 C =14379.557797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.081 3.919 3 H 0.074 0.926 4 C 0.064 3.936 5 N -0.545 5.545 6 C 0.064 3.936 7 C 0.010 3.990 8 H 0.099 0.901 9 C 0.255 3.745 10 N -0.478 5.478 11 C 0.031 3.969 12 C -0.526 4.526 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.283 1.283 20 C 0.053 3.947 21 C 0.061 3.939 22 N -0.464 5.464 23 C 0.351 3.649 24 C -0.136 4.136 25 C -0.005 4.005 26 C 0.133 3.867 27 N -0.256 5.256 28 N -0.263 5.263 29 C 0.181 3.819 30 N -0.287 5.287 31 N -0.291 5.291 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.038 0.962 40 H 0.026 0.974 41 H 0.262 0.738 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.090 0.910 46 H 0.168 0.832 47 H 0.172 0.828 48 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.416 -0.323 16.830 24.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 H 0.092 0.908 4 C -0.064 4.064 5 N -0.270 5.270 6 C -0.064 4.064 7 C -0.011 4.011 8 H 0.117 0.883 9 C -0.062 4.062 10 N -0.155 5.155 11 C -0.007 4.007 12 C -0.564 4.564 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.210 1.210 20 C -0.075 4.075 21 C -0.065 4.065 22 N -0.190 5.190 23 C 0.087 3.913 24 C -0.164 4.164 25 C -0.034 4.034 26 C -0.121 4.121 27 N -0.104 5.104 28 N -0.106 5.106 29 C -0.104 4.104 30 N -0.065 5.065 31 N -0.109 5.109 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.115 0.885 43 H 0.071 0.929 44 H 0.078 0.922 45 H 0.109 0.891 46 H 0.185 0.815 47 H 0.189 0.811 48 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -17.440 2.723 17.338 24.742 hybrid contribution 1.340 -1.428 -0.910 2.160 sum -16.100 1.294 16.428 23.038 Atomic orbital electron populations 1.21855 0.93513 1.02799 1.02240 1.21877 0.95418 0.97618 0.87727 0.90791 1.22178 0.87791 0.99788 0.96675 1.62192 1.07677 1.54383 1.02719 1.22239 0.94499 0.98145 0.91523 1.19250 0.93855 0.83672 1.04373 0.88297 1.28828 0.91415 0.94523 0.91470 1.80995 1.10369 1.13567 1.10530 1.19176 0.96090 0.95763 0.89712 1.21154 0.91155 1.36323 1.07783 0.92482 1.24952 0.98690 0.95000 0.95341 1.69942 1.35581 1.36662 1.10740 0.86542 0.85592 0.77800 0.78188 1.19693 1.20831 1.20952 1.22259 1.01256 0.95904 0.88129 1.22412 0.82369 1.01841 0.99886 1.60606 1.10974 1.48381 0.99001 1.21115 0.90911 0.86970 0.92343 1.21514 1.00629 1.02931 0.91312 1.20511 0.94587 0.89029 0.99242 1.22668 1.06195 0.95793 0.87456 1.75012 1.18147 0.95235 1.21996 1.74603 1.16076 1.13372 1.06522 1.26301 1.02789 0.85740 0.95588 1.47450 1.41230 1.07964 1.09817 1.75912 1.17968 1.12237 1.04781 0.93130 0.91041 0.91457 0.93287 0.89461 0.92426 0.89917 0.94401 0.95539 0.92813 0.88517 0.92855 0.92157 0.89133 0.81463 0.81089 0.75414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.04 37.16 0.34 -0.79 16 2 C 0.08 0.72 2.17 -67.65 -0.15 0.58 16 3 H 0.07 0.82 7.70 -51.93 -0.40 0.42 16 4 C 0.06 0.59 4.89 -3.77 -0.02 0.58 16 5 N -0.55 -6.13 4.34 -234.46 -1.02 -7.14 16 6 C 0.06 0.82 4.35 -3.83 -0.02 0.81 16 7 C 0.01 0.17 2.10 -93.41 -0.20 -0.02 16 8 H 0.10 1.52 6.38 -51.93 -0.33 1.19 16 9 C 0.25 5.00 13.60 -20.76 -0.28 4.71 16 10 N -0.48 -10.39 18.54 42.15 0.78 -9.61 16 11 C 0.03 0.68 4.42 -27.88 -0.12 0.55 16 12 C -0.53 -13.42 8.60 -34.44 -0.30 -13.72 16 13 H 0.06 1.46 7.59 -52.49 -0.40 1.06 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -24.73 13.29 55.43 0.74 -23.99 16 16 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 C 0.05 0.50 5.41 -3.76 -0.02 0.48 16 21 C 0.06 0.52 5.55 -3.77 -0.02 0.50 16 22 N -0.46 -3.79 4.51 -165.20 -0.75 -4.54 16 23 C 0.35 2.94 4.45 -155.24 -0.69 2.25 16 24 C -0.14 -0.82 9.94 -39.42 -0.39 -1.21 16 25 C -0.01 -0.03 10.11 -39.45 -0.40 -0.43 16 26 C 0.13 1.38 7.99 -156.07 -1.25 0.13 16 27 N -0.26 -3.19 12.33 31.13 0.38 -2.81 16 28 N -0.26 -3.22 12.21 29.68 0.36 -2.86 16 29 C 0.18 1.80 13.16 -89.99 -1.18 0.62 16 30 N -0.29 -3.05 4.02 -13.40 -0.05 -3.11 16 31 N -0.29 -2.97 9.98 31.32 0.31 -2.66 16 32 H 0.05 0.45 6.46 -51.93 -0.34 0.11 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.80 8.07 -51.93 -0.42 0.38 16 37 H 0.06 0.67 8.12 -51.93 -0.42 0.24 16 38 H 0.08 1.08 8.03 -51.93 -0.42 0.67 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 42 H 0.10 0.96 6.28 -51.93 -0.33 0.63 16 43 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 0.59 8.13 -51.93 -0.42 0.17 16 46 H 0.17 0.54 8.06 -52.49 -0.42 0.11 16 47 H 0.17 0.58 8.06 -52.48 -0.42 0.15 16 48 H 0.23 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 397.56 15.07 5.99 5.99 Total: -1.00 -33.01 397.56 -9.90 -42.91 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -6.83 Total: -4.51 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -4.79 Total: -3.40 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.76 Total: -56.71 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.01 -9.90 -42.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071876897.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.346 kcal (2) G-P(sol) polarization free energy of solvation -33.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 202.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 192.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds