Wall clock time and date at job start Tue Mar 31 2020 05:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47375 * 2 1 4 4 C 1.50701 * 109.46811 * 240.00211 * 2 1 3 5 5 O 1.21297 * 119.99995 * 274.77946 * 4 2 1 6 6 N 1.34772 * 120.00167 * 94.50749 * 4 2 1 7 7 C 1.37102 * 119.99786 * 355.66972 * 6 4 2 8 8 H 1.08002 * 119.99639 * 336.92752 * 7 6 4 9 9 C 1.38951 * 120.00073 * 156.93166 * 7 6 4 10 10 N 1.31408 * 119.99845 * 355.12128 * 9 7 6 11 11 Si 1.86802 * 119.99905 * 175.12653 * 9 7 6 12 12 H 1.48500 * 109.47181 * 89.99920 * 11 9 7 13 13 H 1.48500 * 109.46614 * 209.99779 * 11 9 7 14 14 H 1.48499 * 109.47250 * 329.99417 * 11 9 7 15 15 C 1.46503 * 120.00274 * 175.66743 * 6 4 2 16 16 C 1.47194 * 109.46909 * 276.65584 * 15 6 4 17 17 N 5.16070 * 140.19957 * 253.48606 * 2 1 3 18 18 N 1.46908 * 109.47056 * 120.00521 * 2 1 3 19 19 C 1.46848 * 110.99553 * 177.53332 * 18 2 1 20 20 C 1.53039 * 109.52043 * 185.83480 * 19 18 2 21 21 C 1.53119 * 109.28108 * 300.82030 * 20 19 18 22 22 C 1.53000 * 109.52436 * 177.55635 * 21 20 19 23 23 C 1.50701 * 109.46741 * 65.31965 * 22 21 20 24 24 C 1.38237 * 119.99779 * 269.72565 * 23 22 21 25 25 C 1.38236 * 120.00009 * 179.77325 * 24 23 22 26 26 C 1.38234 * 119.99586 * 0.49856 * 25 24 23 27 27 C 1.38235 * 120.00314 * 359.75554 * 26 25 24 28 28 C 1.38230 * 119.99884 * 359.97438 * 27 26 25 29 29 C 1.53127 * 109.15735 * 57.65340 * 21 20 19 30 30 C 1.46845 * 110.99737 * 301.73805 * 18 2 1 31 31 H 1.08997 * 109.46985 * 187.95295 * 1 2 3 32 32 H 1.09003 * 109.47033 * 307.94846 * 1 2 3 33 33 H 1.08997 * 109.47254 * 67.94932 * 1 2 3 34 34 H 0.97003 * 119.99798 * 180.02562 * 10 9 7 35 35 H 1.08996 * 109.46937 * 36.65778 * 15 6 4 36 36 H 1.09003 * 109.46924 * 156.65821 * 15 6 4 37 37 H 1.08996 * 109.46121 * 305.84857 * 19 18 2 38 38 H 1.09000 * 109.46582 * 65.82393 * 19 18 2 39 39 H 1.08999 * 109.50339 * 180.87412 * 20 19 18 40 40 H 1.09005 * 109.49803 * 60.76071 * 20 19 18 41 41 H 1.09000 * 109.52151 * 297.74944 * 21 20 19 42 42 H 1.09001 * 109.46876 * 185.32116 * 22 21 20 43 43 H 1.08998 * 109.46967 * 305.31987 * 22 21 20 44 44 H 1.08002 * 120.00063 * 359.97438 * 24 23 22 45 45 H 1.07996 * 120.00383 * 180.23372 * 25 24 23 46 46 H 1.08010 * 119.99941 * 179.72847 * 26 25 24 47 47 H 1.07997 * 120.00305 * 179.97438 * 27 26 25 48 48 H 1.08002 * 120.00363 * 179.97438 * 28 27 26 49 49 H 1.09003 * 109.49762 * 182.40455 * 29 21 20 50 50 H 1.08995 * 109.50388 * 62.28710 * 29 21 20 51 51 H 1.09004 * 109.46359 * 294.18316 * 30 18 2 52 52 H 1.09003 * 109.45998 * 54.14837 * 30 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.1519 -1.9174 -1.2276 6 7 2.3433 -0.0051 -2.3360 7 6 2.1194 1.3470 -2.3721 8 1 1.3842 1.7902 -1.7168 9 6 2.8384 2.1471 -3.2517 10 7 3.7990 1.6242 -3.9801 11 14 2.4394 3.9661 -3.3986 12 1 3.2570 4.7325 -2.4242 13 1 2.7460 4.4304 -4.7754 14 1 0.9981 4.1815 -3.1131 15 6 2.9208 -0.6832 -3.4992 16 6 4.3736 -0.8275 -3.3118 17 7 5.4949 -0.9390 -3.1672 18 7 2.0197 -0.6926 1.1994 19 6 3.4864 -0.7635 1.2041 20 6 3.9535 -1.6142 2.3875 21 6 3.4500 -0.9875 3.6906 22 6 3.8620 -1.8664 4.8733 23 6 5.3640 -1.8713 4.9962 24 6 6.1087 -2.8273 4.3312 25 6 7.4868 -2.8290 4.4401 26 6 8.1193 -1.8809 5.2223 27 6 7.3743 -0.9280 5.8915 28 6 5.9966 -0.9230 5.7781 29 6 1.9233 -0.8807 3.6398 30 6 1.5151 -0.0513 2.4203 31 1 -0.3633 -1.0178 0.1422 32 1 -0.3633 0.6320 0.8104 33 1 -0.3633 0.3858 -0.9525 34 1 4.3011 2.1828 -4.5939 35 1 2.4685 -1.6691 -3.6066 36 1 2.7268 -0.0948 -4.3961 37 1 3.8312 -1.2149 0.2739 38 1 3.8984 0.2416 1.2945 39 1 5.0427 -1.6538 2.3997 40 1 3.5532 -2.6234 2.2905 41 1 3.8810 0.0069 3.8070 42 1 3.4237 -1.4712 5.7897 43 1 3.5074 -2.8841 4.7105 44 1 5.6142 -3.5710 3.7239 45 1 8.0689 -3.5736 3.9176 46 1 9.1958 -1.8848 5.3110 47 1 7.8684 -0.1875 6.5029 48 1 5.4144 -0.1788 6.3012 49 1 1.5621 -0.3962 4.5470 50 1 1.4911 -1.8783 3.5626 51 1 1.9363 0.9506 2.5049 52 1 0.4281 0.0147 2.3732 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071896112.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:42 Heat of formation + Delta-G solvation = 21.943325 kcal Electronic energy + Delta-G solvation = -32298.128738 eV Core-core repulsion = 28262.463404 eV Total energy + Delta-G solvation = -4035.665335 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 355.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.91192 -39.27905 -38.01981 -35.72244 -34.81057 -34.39508 -32.14998 -31.60302 -31.03138 -30.67719 -29.60140 -27.56287 -26.67619 -25.01574 -23.64963 -22.81382 -22.41784 -21.74278 -20.68051 -19.49058 -19.14388 -17.71046 -16.83936 -16.57473 -16.29567 -15.54788 -15.30398 -15.22067 -14.60386 -14.48609 -14.39596 -14.19267 -13.77928 -13.65947 -13.48178 -13.39738 -13.33069 -12.96859 -12.62158 -12.59961 -12.39654 -12.05513 -11.97813 -11.80522 -11.60905 -11.41792 -11.37583 -11.28539 -11.21981 -11.08000 -11.05062 -10.94192 -10.85742 -10.64893 -10.53639 -10.44472 -10.25474 -10.03623 -9.94783 -9.35733 -8.97155 -8.71040 -8.52791 -8.08051 -7.74349 -6.53699 -4.18803 1.29546 1.33349 3.01688 3.11751 3.14298 3.53280 3.71203 3.82753 4.03887 4.25097 4.27197 4.63305 4.72783 4.86322 4.87393 4.91767 4.97152 4.97584 5.03337 5.17555 5.35269 5.44364 5.46743 5.52621 5.56566 5.62530 5.70001 5.71505 5.77244 5.80288 5.83410 5.91349 5.93675 5.96711 6.00932 6.12668 6.15919 6.18193 6.28389 6.31901 6.36199 6.40898 6.44821 6.52075 6.53172 6.56214 6.62987 6.69761 6.79540 6.94782 7.20850 7.49300 7.52339 7.57920 8.17232 8.89056 8.94756 9.27402 9.67621 10.48563 Molecular weight = 355.20amu Principal moments of inertia in cm(-1) A = 0.010862 B = 0.002885 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.083778 B = 9703.973766 C =10385.875089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.077 3.923 3 H 0.065 0.935 4 C 0.478 3.522 5 O -0.577 6.577 6 N -0.448 5.448 7 C -0.335 4.335 8 H 0.102 0.898 9 C 0.038 3.962 10 N -0.877 5.877 11 Si 0.927 3.073 12 H -0.278 1.278 13 H -0.281 1.281 14 H -0.268 1.268 15 C 0.230 3.770 16 C 0.261 3.739 17 N -0.491 5.491 18 N -0.514 5.514 19 C 0.059 3.941 20 C -0.106 4.106 21 C -0.082 4.082 22 C -0.076 4.076 23 C -0.074 4.074 24 C -0.114 4.114 25 C -0.119 4.119 26 C -0.129 4.129 27 C -0.121 4.121 28 C -0.120 4.120 29 C -0.107 4.107 30 C 0.054 3.946 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.275 0.725 35 H 0.082 0.918 36 H 0.133 0.867 37 H 0.081 0.919 38 H 0.025 0.975 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.119 0.881 49 H 0.062 0.938 50 H 0.072 0.928 51 H 0.028 0.972 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.058 -2.295 15.576 15.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.034 4.034 3 H 0.083 0.917 4 C 0.266 3.734 5 O -0.459 6.459 6 N -0.169 5.169 7 C -0.462 4.462 8 H 0.120 0.880 9 C -0.166 4.166 10 N -0.516 5.516 11 Si 0.753 3.247 12 H -0.204 1.204 13 H -0.206 1.206 14 H -0.192 1.192 15 C 0.103 3.897 16 C -0.057 4.057 17 N -0.171 5.171 18 N -0.240 5.240 19 C -0.069 4.069 20 C -0.144 4.144 21 C -0.100 4.100 22 C -0.113 4.113 23 C -0.074 4.074 24 C -0.132 4.132 25 C -0.137 4.137 26 C -0.147 4.147 27 C -0.139 4.139 28 C -0.138 4.138 29 C -0.145 4.145 30 C -0.074 4.074 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.151 0.849 37 H 0.099 0.901 38 H 0.043 0.957 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.141 0.859 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.137 0.863 49 H 0.081 0.919 50 H 0.090 0.910 51 H 0.046 0.954 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.398 -3.463 15.594 15.979 hybrid contribution 0.032 2.201 -0.302 2.222 sum -0.367 -1.261 15.292 15.348 Atomic orbital electron populations 1.21711 0.93243 1.02403 1.01867 1.21429 0.96262 0.96618 0.89095 0.91685 1.20063 0.82023 0.87395 0.83943 1.90571 1.58028 1.14152 1.83182 1.43601 1.54839 1.07943 1.10491 1.19661 1.21417 0.81224 1.23903 0.88041 1.25342 0.94397 1.00460 0.96428 1.69766 1.19981 1.36710 1.25124 0.85913 0.78938 0.81885 0.77941 1.20384 1.20596 1.19229 1.18604 0.80563 0.97723 0.92765 1.29321 0.95404 0.89122 0.91817 1.80855 1.13546 1.13340 1.09388 1.61715 1.09307 1.52463 1.00492 1.22032 0.87189 0.98046 0.99621 1.21642 0.99916 0.99877 0.92943 1.21193 0.95780 0.98775 0.94291 1.20687 0.90781 1.01116 0.98699 1.19935 0.95994 0.95082 0.96408 1.21134 0.93922 0.98895 0.99238 1.21172 0.94779 0.98929 0.98789 1.21119 0.99709 0.95848 0.98034 1.21111 0.94123 0.98776 0.99891 1.21033 0.94576 0.98702 0.99529 1.21614 0.94934 1.01188 0.96777 1.22113 1.00257 0.95198 0.89881 0.91586 0.92752 0.91473 0.91431 0.90048 0.84931 0.90050 0.95680 0.91801 0.91114 0.91587 0.91174 0.90799 0.85928 0.86191 0.86413 0.86379 0.86329 0.91944 0.90964 0.95396 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 8.55 37.16 0.32 -1.80 16 2 C 0.08 1.45 1.69 -68.86 -0.12 1.33 16 3 H 0.07 1.29 6.52 -51.93 -0.34 0.95 16 4 C 0.48 10.66 5.35 -10.99 -0.06 10.60 16 5 O -0.58 -14.20 15.59 5.54 0.09 -14.12 16 6 N -0.45 -10.25 2.60 -117.93 -0.31 -10.56 16 7 C -0.33 -7.62 8.70 -14.93 -0.13 -7.75 16 8 H 0.10 2.17 6.34 -52.49 -0.33 1.84 16 9 C 0.04 0.88 5.21 -17.47 -0.09 0.79 16 10 N -0.88 -21.40 8.90 55.50 0.49 -20.91 16 11 Si 0.93 18.28 29.56 -169.99 -5.02 13.25 16 12 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 13 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 14 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 15 C 0.23 5.10 5.09 -6.83 -0.03 5.07 16 16 C 0.26 6.39 13.65 -20.76 -0.28 6.11 16 17 N -0.49 -12.70 18.54 42.15 0.78 -11.91 16 18 N -0.51 -8.95 4.29 -228.08 -0.98 -9.93 16 19 C 0.06 1.08 5.16 -3.83 -0.02 1.06 16 20 C -0.11 -1.58 4.89 -26.65 -0.13 -1.71 16 21 C -0.08 -0.99 2.24 -90.49 -0.20 -1.19 16 22 C -0.08 -0.78 4.84 -27.88 -0.14 -0.91 16 23 C -0.07 -0.84 4.72 -104.62 -0.49 -1.33 16 24 C -0.11 -1.32 8.06 -39.58 -0.32 -1.64 16 25 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 26 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 27 C -0.12 -1.25 10.05 -39.59 -0.40 -1.65 16 28 C -0.12 -1.29 9.70 -39.59 -0.38 -1.67 16 29 C -0.11 -1.25 5.38 -26.65 -0.14 -1.39 16 30 C 0.05 0.74 5.19 -3.84 -0.02 0.72 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.71 6.71 -51.93 -0.35 0.37 16 33 H 0.07 1.07 8.01 -51.93 -0.42 0.65 16 34 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 35 H 0.08 1.67 7.57 -51.93 -0.39 1.27 16 36 H 0.13 2.91 6.26 -51.93 -0.33 2.59 16 37 H 0.08 1.81 6.30 -51.93 -0.33 1.49 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.96 6.46 -51.93 -0.34 0.63 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 43 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 44 H 0.12 1.34 8.05 -52.49 -0.42 0.92 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 46 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 47 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 48 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 51 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.08 0.98 6.14 -51.93 -0.32 0.66 16 LS Contribution 411.42 15.07 6.20 6.20 Total: -1.00 -28.60 411.42 -10.37 -38.97 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -8.18 Total: 7.83 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -3.44 Total: 1.18 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.01 Total: -53.31 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.09 Total: -14.12 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.02 Total: 13.25 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -28.60 -10.37 -38.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071896112.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.916 kcal (2) G-P(sol) polarization free energy of solvation -28.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds