Wall clock time and date at job start Tue Mar 31 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35993 * 117.00126 * 2 1 4 4 C 1.38965 * 119.90329 * 0.03231 * 3 2 1 5 5 C 1.38035 * 120.33538 * 179.73973 * 4 3 2 6 6 C 1.38673 * 120.14642 * 0.51061 * 5 4 3 7 7 O 1.35726 * 120.09515 * 179.74254 * 6 5 4 8 8 C 1.42901 * 117.00284 * 359.72531 * 7 6 5 9 9 C 1.40094 * 119.81198 * 359.46595 * 6 5 4 10 10 C 1.47532 * 120.16461 * 180.29922 * 9 6 5 11 11 O 1.21590 * 120.00719 * 325.99512 * 10 9 6 12 12 N 1.34779 * 119.99404 * 145.99694 * 10 9 6 13 13 C 1.46493 * 120.00500 * 6.71845 * 12 10 9 14 14 C 1.50704 * 109.47215 * 103.70319 * 13 12 10 15 15 H 1.07997 * 120.00180 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99989 * 180.02562 * 14 13 12 17 17 N 1.31506 * 119.99792 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99718 * 0.02562 * 16 14 13 19 19 H 1.48494 * 109.47014 * 90.00011 * 18 16 14 20 20 H 1.48500 * 109.46777 * 209.99972 * 18 16 14 21 21 H 1.48496 * 109.47341 * 329.99788 * 18 16 14 22 22 C 1.46505 * 119.99752 * 186.71877 * 12 10 9 23 23 C 1.50699 * 109.47333 * 89.99901 * 22 12 10 24 24 C 1.38674 * 120.41767 * 269.72442 * 23 22 12 25 25 C 1.38624 * 118.42023 * 179.78425 * 24 23 22 26 26 C 1.38234 * 119.15835 * 0.51126 * 25 24 23 27 27 N 1.31850 * 120.76328 * 359.72458 * 26 25 24 28 28 C 1.31882 * 121.72788 * 0.02562 * 27 26 25 29 29 C 1.38228 * 119.90716 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47472 * 59.99586 * 1 2 3 31 31 H 1.09000 * 109.46900 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46849 * 299.99315 * 1 2 3 33 33 H 1.08001 * 119.83201 * 0.02562 * 4 3 2 34 34 H 1.08005 * 119.92430 * 180.24846 * 5 4 3 35 35 H 1.09000 * 109.47423 * 179.97438 * 8 7 6 36 36 H 1.08999 * 109.47114 * 59.99534 * 8 7 6 37 37 H 1.09001 * 109.46964 * 300.00131 * 8 7 6 38 38 H 1.09007 * 109.47399 * 223.70295 * 13 12 10 39 39 H 1.09005 * 109.47069 * 343.70415 * 13 12 10 40 40 H 0.96999 * 119.99784 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.47211 * 210.00184 * 22 12 10 42 42 H 1.09003 * 109.46717 * 329.99766 * 22 12 10 43 43 H 1.07998 * 120.79013 * 0.02562 * 24 23 22 44 44 H 1.08001 * 120.42523 * 180.21829 * 25 24 23 45 45 H 1.08000 * 119.61746 * 179.75054 * 26 25 24 46 46 H 1.07997 * 119.62100 * 179.97438 * 28 27 26 47 47 H 1.07996 * 120.07939 * 0.02877 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2876 2.3759 0.0007 5 6 1.9050 3.6105 0.0061 6 6 3.2890 3.6970 0.0002 7 8 3.8950 4.9115 0.0003 8 6 3.0454 6.0605 0.0005 9 6 4.0601 2.5273 0.0001 10 6 5.5330 2.6104 0.0005 11 8 6.0912 3.5162 -0.5879 12 7 6.2600 1.6819 0.6532 13 6 5.5997 0.5116 1.2367 14 6 5.8499 -0.6926 0.3658 15 1 6.4419 -0.5959 -0.5322 16 6 5.3230 -1.9178 0.7156 17 7 5.5417 -2.9687 -0.0441 18 14 4.2984 -2.0848 2.2686 19 1 2.8693 -1.8404 1.9474 20 1 4.4546 -3.4549 2.8196 21 1 4.7568 -1.0920 3.2733 22 6 7.7107 1.8432 0.7792 23 6 8.0236 2.6091 2.0388 24 6 8.1137 3.9927 2.0151 25 6 8.3991 4.6556 3.1986 26 6 8.5935 3.9199 4.3527 27 7 8.5049 2.6045 4.3369 28 6 8.2302 1.9411 3.2306 29 6 3.4269 1.2818 -0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 0.2094 2.3144 0.0016 34 1 1.3088 4.5110 0.0107 35 1 3.6556 6.9637 0.0010 36 1 2.4162 6.0470 0.8905 37 1 2.4161 6.0472 -0.8895 38 1 5.9998 0.3282 2.2340 39 1 4.5273 0.6952 1.3036 40 1 5.1707 -3.8305 0.2017 41 1 8.1829 0.8617 0.8240 42 1 8.0916 2.3905 -0.0830 43 1 7.9613 4.5410 1.0972 44 1 8.4733 5.7329 3.2179 45 1 8.8202 4.4286 5.2780 46 1 8.1662 0.8634 3.2565 47 1 4.0149 0.3759 -0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072285167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:05 Heat of formation + Delta-G solvation = -10.478252 kcal Electronic energy + Delta-G solvation = -32746.872826 eV Core-core repulsion = 28476.249829 eV Total energy + Delta-G solvation = -4270.622997 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.61999 -39.93469 -38.86470 -38.55133 -36.01937 -35.33286 -33.17406 -32.23020 -31.65554 -30.72734 -29.60517 -28.20825 -27.41962 -26.74520 -26.09760 -23.41469 -23.31284 -22.39349 -21.98079 -21.39689 -19.40297 -17.61318 -17.40807 -17.14279 -16.74918 -16.67435 -16.28975 -15.78660 -15.62393 -15.41217 -15.35455 -15.07381 -14.56096 -14.35424 -14.22758 -13.85905 -13.60150 -13.17533 -13.15232 -12.84591 -12.74401 -12.70679 -12.53062 -12.42756 -12.28151 -11.77261 -11.61118 -11.47850 -11.32409 -11.13182 -11.04759 -10.72656 -10.34225 -10.30519 -10.14168 -9.70579 -9.58432 -9.26619 -9.23418 -8.85012 -8.76019 -8.50774 -7.84257 -7.48059 -6.26428 -4.29943 1.16741 1.29795 1.52506 1.67148 3.22888 3.28543 3.30650 3.32362 3.40004 3.58905 3.70117 4.09825 4.18609 4.26752 4.66389 4.78218 4.90113 5.03055 5.04450 5.09238 5.14659 5.16068 5.17962 5.23539 5.24403 5.30211 5.34990 5.41185 5.48468 5.55678 5.65722 5.70961 5.89812 6.05967 6.09764 6.16614 6.25095 6.32745 6.35865 6.39502 6.59597 6.61450 6.71940 6.83799 6.93619 7.21882 7.40190 7.48708 7.71899 8.03485 8.18155 8.37330 8.78345 8.87583 9.32014 10.84838 Molecular weight = 356.16amu Principal moments of inertia in cm(-1) A = 0.007535 B = 0.005402 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3714.972491 B = 5182.127409 C = 7761.585516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.306 6.306 3 C 0.075 3.925 4 C -0.151 4.151 5 C -0.193 4.193 6 C 0.140 3.860 7 O -0.292 6.292 8 C 0.026 3.974 9 C -0.126 4.126 10 C 0.569 3.431 11 O -0.545 6.545 12 N -0.580 5.580 13 C 0.180 3.820 14 C -0.548 4.548 15 H 0.084 0.916 16 C 0.087 3.913 17 N -0.880 5.880 18 Si 0.853 3.147 19 H -0.259 1.259 20 H -0.282 1.282 21 H -0.262 1.262 22 C 0.162 3.838 23 C -0.145 4.145 24 C -0.055 4.055 25 C -0.181 4.181 26 C 0.089 3.911 27 N -0.490 5.490 28 C 0.113 3.887 29 C -0.086 4.086 30 H 0.051 0.949 31 H 0.097 0.903 32 H 0.050 0.950 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.097 0.903 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.029 0.971 39 H 0.058 0.942 40 H 0.269 0.731 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.138 0.862 44 H 0.129 0.871 45 H 0.149 0.851 46 H 0.158 0.842 47 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.721 13.600 3.473 15.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.219 6.219 3 C 0.031 3.969 4 C -0.170 4.170 5 C -0.212 4.212 6 C 0.093 3.907 7 O -0.204 6.204 8 C -0.069 4.069 9 C -0.130 4.130 10 C 0.358 3.642 11 O -0.424 6.424 12 N -0.309 5.309 13 C 0.059 3.941 14 C -0.585 4.585 15 H 0.102 0.898 16 C -0.118 4.118 17 N -0.515 5.515 18 Si 0.679 3.321 19 H -0.183 1.183 20 H -0.207 1.207 21 H -0.187 1.187 22 C 0.038 3.962 23 C -0.148 4.148 24 C -0.082 4.082 25 C -0.200 4.200 26 C -0.068 4.068 27 N -0.199 5.199 28 C -0.044 4.044 29 C -0.104 4.104 30 H 0.070 0.930 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.146 0.854 34 H 0.149 0.851 35 H 0.115 0.885 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.047 0.953 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.117 0.883 42 H 0.107 0.893 43 H 0.156 0.844 44 H 0.147 0.853 45 H 0.167 0.833 46 H 0.175 0.825 47 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -6.029 13.236 3.920 15.064 hybrid contribution -1.471 0.440 0.084 1.537 sum -7.500 13.676 4.004 16.103 Atomic orbital electron populations 1.22997 0.79406 1.03706 1.00650 1.86243 1.20368 1.26121 1.89204 1.18830 0.92264 0.84277 1.01574 1.21118 0.99768 0.91763 1.04311 1.20804 0.92721 0.98255 1.09437 1.18827 0.90441 0.84873 0.96573 1.86258 1.34455 1.11612 1.88056 1.23032 0.95689 0.87404 1.00799 1.19074 0.93720 0.90602 1.09597 1.17827 0.86058 0.81567 0.78778 1.90693 1.72176 1.35214 1.44312 1.47732 1.06364 1.22684 1.54108 1.20668 0.94966 0.83693 0.94768 1.21291 1.35404 0.91157 1.10674 0.89816 1.24825 0.95306 0.95471 0.96241 1.69871 1.43780 1.00293 1.37604 0.87157 0.82480 0.78328 0.84172 1.18336 1.20731 1.18656 1.20163 0.81857 1.00543 0.93617 1.21461 1.00327 0.94957 0.98043 1.21675 0.93716 0.94021 0.98750 1.22096 1.02827 1.01106 0.94011 1.22685 0.96280 0.90073 0.97802 1.67696 1.12760 1.09559 1.29871 1.22821 0.93675 1.00652 0.87265 1.22066 0.92477 1.00063 0.95823 0.93015 0.88477 0.93164 0.85352 0.85138 0.88486 0.93124 0.92909 0.95342 0.92521 0.92138 0.88283 0.89327 0.84425 0.85273 0.83336 0.82464 0.78453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.31 -5.46 10.49 -19.72 -0.21 -5.67 16 3 C 0.08 1.35 6.68 -39.32 -0.26 1.09 16 4 C -0.15 -2.19 9.02 -39.39 -0.36 -2.55 16 5 C -0.19 -2.79 9.02 -39.50 -0.36 -3.14 16 6 C 0.14 2.46 6.66 -38.72 -0.26 2.20 16 7 O -0.29 -4.91 9.09 -37.09 -0.34 -5.24 16 8 C 0.03 0.29 9.81 101.05 0.99 1.28 16 9 C -0.13 -2.55 5.52 -104.86 -0.58 -3.13 16 10 C 0.57 12.22 7.28 -12.47 -0.09 12.13 16 11 O -0.54 -12.26 15.43 -12.92 -0.20 -12.46 16 12 N -0.58 -12.06 2.47 -177.66 -0.44 -12.50 16 13 C 0.18 4.00 3.75 -5.20 -0.02 3.98 16 14 C -0.55 -13.97 8.07 -34.44 -0.28 -14.25 16 15 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 16 C 0.09 2.30 5.46 -17.82 -0.10 2.20 16 17 N -0.88 -24.87 13.96 55.43 0.77 -24.09 16 18 Si 0.85 19.68 27.47 -169.99 -4.67 15.01 16 19 H -0.26 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 22 C 0.16 2.95 5.56 -5.19 -0.03 2.92 16 23 C -0.14 -2.43 5.48 -104.48 -0.57 -3.00 16 24 C -0.06 -0.85 9.86 -39.28 -0.39 -1.24 16 25 C -0.18 -2.40 10.11 -39.44 -0.40 -2.80 16 26 C 0.09 1.22 11.18 -17.55 -0.20 1.03 16 27 N -0.49 -8.05 10.36 -13.25 -0.14 -8.19 16 28 C 0.11 1.90 10.86 -17.55 -0.19 1.71 16 29 C -0.09 -1.77 7.35 -39.03 -0.29 -2.06 16 30 H 0.05 0.52 7.66 -51.93 -0.40 0.12 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 33 H 0.13 1.43 6.27 -52.49 -0.33 1.10 16 34 H 0.13 1.43 6.29 -52.48 -0.33 1.10 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 37 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 38 H 0.03 0.64 7.20 -51.92 -0.37 0.26 16 39 H 0.06 1.28 3.25 -52.15 -0.17 1.11 16 40 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.10 1.78 7.89 -51.93 -0.41 1.37 16 42 H 0.09 1.60 7.29 -51.93 -0.38 1.22 16 43 H 0.14 2.15 8.05 -52.49 -0.42 1.72 16 44 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 45 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 46 H 0.16 2.56 8.06 -52.49 -0.42 2.14 16 47 H 0.20 4.57 3.85 -52.49 -0.20 4.37 16 LS Contribution 389.06 15.07 5.86 5.86 Total: -1.00 -32.41 389.06 -7.64 -40.05 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -5.91 Total: 9.52 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -2.38 Total: -2.30 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.20 Total: -44.78 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.74 Total: -23.37 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.67 Total: 15.01 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.41 -7.64 -40.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072285167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.574 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds