Wall clock time and date at job start Tue Mar 31 2020 06:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86804 * 119.99781 * 2 1 4 4 H 1.48500 * 109.47284 * 240.00365 * 3 2 1 5 5 H 1.48498 * 109.47072 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46846 * 120.00390 * 3 2 1 7 7 C 1.39886 * 120.00347 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00354 * 197.91746 * 7 2 1 9 9 C 1.41217 * 119.99987 * 17.91925 * 7 2 1 10 10 C 1.40839 * 120.18103 * 204.54516 * 9 7 2 11 11 C 1.36434 * 119.81210 * 180.02562 * 10 9 7 12 12 C 1.39317 * 120.18548 * 0.02562 * 11 10 9 13 13 O 1.35669 * 119.81619 * 179.97438 * 12 11 10 14 14 C 1.42900 * 117.00076 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47399 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47005 * 64.99889 * 15 14 13 17 17 C 1.34772 * 120.00288 * 180.02562 * 16 15 14 18 18 O 1.21594 * 119.99578 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00477 * 180.02562 * 17 16 15 20 20 C 1.48044 * 125.64654 * 359.68843 * 19 17 16 21 21 C 1.53689 * 103.47680 * 156.61951 * 20 19 17 22 22 H 1.08997 * 108.27202 * 285.75789 * 21 20 19 23 23 C 1.50034 * 114.88013 * 164.05819 * 21 20 19 24 24 C 1.49625 * 113.23788 * 281.56072 * 23 21 20 25 25 C 1.29190 * 123.39092 * 347.39314 * 24 23 21 26 26 C 1.49093 * 124.68199 * 1.94772 * 25 24 23 27 27 C 1.53162 * 112.89729 * 342.21430 * 26 25 24 28 28 H 1.09000 * 112.88633 * 273.78708 * 27 26 25 29 29 C 1.47277 * 125.65160 * 180.02562 * 19 17 16 30 30 C 1.39315 * 120.36267 * 0.27560 * 12 11 10 31 31 C 1.36433 * 120.18621 * 359.43812 * 30 12 11 32 32 H 0.96997 * 120.00116 * 359.97438 * 1 2 3 33 33 H 1.08001 * 120.08912 * 0.02562 * 10 9 7 34 34 H 1.07997 * 119.91083 * 179.97438 * 11 10 9 35 35 H 1.08998 * 109.47207 * 300.00267 * 14 13 12 36 36 H 1.09005 * 109.47192 * 59.99723 * 14 13 12 37 37 H 1.09004 * 109.47032 * 184.99750 * 15 14 13 38 38 H 1.08994 * 109.46824 * 305.00093 * 15 14 13 39 39 H 0.97009 * 119.99735 * 0.02562 * 16 15 14 40 40 H 1.08998 * 110.59962 * 275.23457 * 20 19 17 41 41 H 1.09000 * 110.60056 * 38.18419 * 20 19 17 42 42 H 1.09002 * 108.74235 * 160.58890 * 23 21 20 43 43 H 1.08999 * 108.72243 * 42.52177 * 23 21 20 44 44 H 1.07999 * 118.30225 * 167.41782 * 24 23 21 45 45 H 1.08004 * 117.65937 * 181.92335 * 25 24 23 46 46 H 1.09001 * 108.79572 * 221.33005 * 26 25 24 47 47 H 1.08995 * 108.79440 * 103.09422 * 26 25 24 48 48 H 1.09003 * 110.01106 * 296.82893 * 29 19 17 49 49 H 1.09005 * 110.01011 * 58.19585 * 29 19 17 50 50 H 1.07999 * 119.90529 * 179.70384 * 30 12 11 51 51 H 1.08003 * 120.09700 * 180.27864 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0964 1.6966 -1.2125 5 1 1.2777 2.7465 0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0083 -1.2114 -0.0005 8 1 3.0490 -1.2342 0.2872 9 6 1.3536 -2.4046 -0.3774 10 6 1.8265 -3.6480 0.0850 11 6 1.1886 -4.7962 -0.2842 12 6 0.0728 -4.7410 -1.1165 13 8 -0.5555 -5.8873 -1.4793 14 6 -1.6931 -5.7609 -2.3349 15 6 -2.2634 -7.1488 -2.6337 16 7 -2.7735 -7.7440 -1.3961 17 6 -3.3255 -8.9733 -1.4170 18 8 -3.3996 -9.5886 -2.4631 19 7 -3.7953 -9.5207 -0.2785 20 6 -3.7634 -8.8886 1.0598 21 6 -4.8965 -9.5980 1.8180 22 1 -5.8475 -9.2167 1.4464 23 6 -4.8602 -9.4304 3.3086 24 6 -3.8563 -10.3152 3.9779 25 6 -3.2669 -11.2989 3.3829 26 6 -3.4656 -11.6665 1.9517 27 6 -4.7377 -11.0602 1.3518 28 1 -5.6218 -11.6741 1.5240 29 6 -4.4191 -10.8494 -0.1585 30 6 -0.3976 -3.5155 -1.5833 31 6 0.2253 -2.3577 -1.2188 32 1 -0.4850 0.8400 0.0004 33 1 2.6917 -3.6925 0.7300 34 1 1.5501 -5.7506 0.0691 35 1 -2.4526 -5.1539 -1.8422 36 1 -1.3947 -5.2825 -3.2678 37 1 -3.0751 -7.0603 -3.3558 38 1 -1.4784 -7.7832 -3.0453 39 1 -2.7140 -7.2532 -0.5614 40 1 -2.8038 -9.0667 1.5452 41 1 -3.9636 -7.8199 0.9841 42 1 -5.8481 -9.6556 3.7105 43 1 -4.6200 -8.3923 3.5381 44 1 -3.6120 -10.1217 5.0119 45 1 -2.5809 -11.8977 3.9638 46 1 -3.5227 -12.7521 1.8726 47 1 -2.6065 -11.3194 1.3776 48 1 -5.3392 -10.8835 -0.7419 49 1 -3.7286 -11.6183 -0.5052 50 1 -1.2604 -3.4817 -2.2320 51 1 -0.1433 -1.4081 -1.5779 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076088417.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:28 Heat of formation + Delta-G solvation = -30.508381 kcal Electronic energy + Delta-G solvation = -30853.704652 eV Core-core repulsion = 26718.046178 eV Total energy + Delta-G solvation = -4135.658474 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 356.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.98310 -39.29087 -38.70562 -36.60976 -35.48697 -34.67247 -33.34137 -32.10388 -31.47529 -29.82102 -29.57615 -28.58665 -27.65092 -25.33015 -24.79489 -23.16174 -22.49432 -21.37473 -21.04972 -20.29323 -20.09171 -18.24926 -17.61504 -17.40754 -17.11050 -16.77839 -16.18171 -15.83850 -15.39779 -15.01544 -14.89801 -14.55213 -14.31068 -14.09453 -13.98717 -13.86873 -13.72587 -13.15653 -13.04311 -12.95440 -12.79331 -12.46977 -12.33192 -12.24772 -12.13911 -12.05498 -11.92419 -11.45502 -11.24157 -11.19916 -11.07675 -11.01201 -10.75007 -10.64786 -10.44774 -10.20498 -9.96028 -9.84372 -9.41863 -9.29183 -9.15521 -9.04763 -8.61352 -7.69879 -7.06350 -6.76919 -4.29260 2.00247 2.49627 2.74179 2.92723 3.05119 3.07778 3.18373 3.19285 3.80231 3.91827 3.98372 4.06474 4.19624 4.24555 4.57735 4.75534 4.83566 4.88548 4.95522 5.02228 5.03837 5.10572 5.24823 5.29050 5.34280 5.43197 5.49796 5.55628 5.58849 5.63895 5.65748 5.69427 5.71657 5.79827 5.91044 5.92670 6.06450 6.07271 6.23539 6.35783 6.49311 6.65229 6.67600 6.85066 6.94415 7.02806 7.23977 7.36552 7.51554 7.86351 7.90667 7.96139 8.10947 8.39119 8.56238 8.60594 8.86255 8.94869 10.17842 Molecular weight = 356.19amu Principal moments of inertia in cm(-1) A = 0.013484 B = 0.001937 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.005160 B =14450.946378 C =15607.920856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.088 3.912 10 C -0.197 4.197 11 C -0.111 4.111 12 C -0.012 4.012 13 O -0.327 6.327 14 C 0.055 3.945 15 C 0.144 3.856 16 N -0.735 5.735 17 C 0.723 3.277 18 O -0.595 6.595 19 N -0.639 5.639 20 C 0.107 3.893 21 C -0.094 4.094 22 H 0.079 0.921 23 C -0.078 4.078 24 C -0.155 4.155 25 C -0.153 4.153 26 C -0.089 4.089 27 C -0.092 4.092 28 H 0.104 0.896 29 C 0.129 3.871 30 C -0.173 4.173 31 C -0.135 4.135 32 H 0.280 0.720 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.401 0.599 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.064 0.936 49 H 0.069 0.931 50 H 0.094 0.906 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.790 -17.099 4.926 21.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.086 3.914 10 C -0.217 4.217 11 C -0.130 4.130 12 C -0.055 4.055 13 O -0.243 6.243 14 C -0.022 4.022 15 C 0.020 3.980 16 N -0.391 5.391 17 C 0.424 3.576 18 O -0.474 6.474 19 N -0.378 5.378 20 C -0.016 4.016 21 C -0.113 4.113 22 H 0.098 0.902 23 C -0.116 4.116 24 C -0.173 4.173 25 C -0.171 4.171 26 C -0.126 4.126 27 C -0.111 4.111 28 H 0.122 0.878 29 C 0.006 3.994 30 C -0.192 4.192 31 C -0.154 4.154 32 H 0.091 0.909 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.236 0.764 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.125 0.875 45 H 0.120 0.880 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.112 0.888 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.944 -17.514 4.098 21.591 hybrid contribution 0.315 1.329 0.448 1.438 sum -11.629 -16.184 4.546 20.441 Atomic orbital electron populations 1.69823 1.07525 1.29207 1.36011 1.25875 0.94721 1.01237 0.92344 0.86383 0.80142 0.80317 0.79964 1.18872 1.20415 1.19043 1.19446 0.98111 0.91246 1.40481 0.90510 1.17600 0.91799 0.92162 0.89843 1.20595 1.03216 0.92243 1.05630 1.19599 0.95506 0.97597 1.00291 1.18536 0.97851 0.83750 1.05355 1.85836 1.42293 1.30977 1.65216 1.22723 0.88535 0.95754 0.95192 1.21292 0.98204 0.92791 0.85738 1.45094 1.64601 1.17004 1.12444 1.15399 0.78260 0.81348 0.82547 1.90914 1.64009 1.62906 1.29537 1.47664 1.64500 1.19077 1.06574 1.22216 0.99284 0.97444 0.82698 1.21266 0.99278 0.95420 0.95356 0.90217 1.19566 0.99003 1.00072 0.92913 1.21859 0.98583 0.96878 0.99956 1.21724 1.00569 0.98462 0.96345 1.20404 0.97552 1.00822 0.93855 1.22437 0.98726 0.96262 0.93670 0.87821 1.22207 0.97659 0.83883 0.95685 1.20610 1.01529 0.92907 1.04142 1.20944 0.98547 0.96508 0.99406 0.90915 0.88253 0.88620 0.92401 0.91195 0.90119 0.90718 0.76384 0.90924 0.90638 0.90347 0.90373 0.87545 0.88039 0.90904 0.90391 0.91769 0.91227 0.88754 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.30 10.96 55.54 0.61 -19.69 16 2 C 0.08 1.86 5.13 -17.34 -0.09 1.77 16 3 Si 0.91 18.42 29.60 -169.99 -5.03 13.38 16 4 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.46 -12.08 9.04 -37.83 -0.34 -12.42 16 8 H 0.08 1.92 7.91 -52.49 -0.41 1.51 16 9 C 0.09 2.31 5.57 -106.80 -0.60 1.71 16 10 C -0.20 -4.76 9.74 -39.25 -0.38 -5.14 16 11 C -0.11 -2.51 9.92 -39.83 -0.40 -2.91 16 12 C -0.01 -0.26 6.71 -38.78 -0.26 -0.52 16 13 O -0.33 -6.23 10.07 -18.71 -0.19 -6.41 16 14 C 0.05 0.81 4.86 37.16 0.18 0.99 16 15 C 0.14 1.95 6.06 -4.04 -0.02 1.93 16 16 N -0.74 -9.98 5.46 -65.22 -0.36 -10.33 16 17 C 0.72 10.60 8.49 -86.92 -0.74 9.86 16 18 O -0.59 -10.78 16.67 5.28 0.09 -10.69 16 19 N -0.64 -7.30 3.33 -175.35 -0.58 -7.88 16 20 C 0.11 0.97 5.56 -2.84 -0.02 0.95 16 21 C -0.09 -0.66 2.62 -91.06 -0.24 -0.90 16 22 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 23 C -0.08 -0.49 5.59 -29.87 -0.17 -0.66 16 24 C -0.15 -1.07 9.88 -36.05 -0.36 -1.42 16 25 C -0.15 -1.10 9.77 -36.30 -0.35 -1.45 16 26 C -0.09 -0.64 4.65 -28.57 -0.13 -0.77 16 27 C -0.09 -0.63 3.94 -88.37 -0.35 -0.98 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 29 C 0.13 1.21 5.97 -2.13 -0.01 1.20 16 30 C -0.17 -3.91 8.96 -39.83 -0.36 -4.26 16 31 C -0.13 -3.41 8.64 -39.25 -0.34 -3.75 16 32 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 33 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 34 H 0.10 1.96 8.06 -52.49 -0.42 1.54 16 35 H 0.06 0.84 7.66 -51.93 -0.40 0.44 16 36 H 0.07 1.00 7.63 -51.93 -0.40 0.60 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.40 5.09 6.99 -40.82 -0.29 4.80 16 40 H 0.07 0.70 7.63 -51.93 -0.40 0.31 16 41 H 0.08 0.66 7.36 -51.93 -0.38 0.27 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 44 H 0.11 0.66 8.06 -52.49 -0.42 0.23 16 45 H 0.10 0.66 8.06 -52.48 -0.42 0.24 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.08 0.68 7.02 -51.93 -0.36 0.32 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.07 0.69 7.69 -51.93 -0.40 0.29 16 50 H 0.09 1.87 6.27 -52.49 -0.33 1.55 16 51 H 0.12 3.15 6.16 -52.48 -0.32 2.82 16 LS Contribution 406.47 15.07 6.13 6.13 Total: -1.00 -30.40 406.47 -12.20 -42.60 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -7.89 Total: 9.68 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -4.97 Total: -16.78 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.33 Total: -37.91 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.10 Total: -17.10 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.40 -12.20 -42.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076088417.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.091 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds