Wall clock time and date at job start Tue Mar 31 2020 06:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86804 * 119.99781 * 2 1 4 4 H 1.48500 * 109.47284 * 240.00365 * 3 2 1 5 5 H 1.48498 * 109.47072 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46846 * 120.00390 * 3 2 1 7 7 C 1.39886 * 120.00347 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00354 * 197.91746 * 7 2 1 9 9 C 1.41217 * 119.99987 * 17.91925 * 7 2 1 10 10 C 1.40839 * 120.18103 * 204.54516 * 9 7 2 11 11 C 1.36434 * 119.81210 * 180.02562 * 10 9 7 12 12 C 1.39317 * 120.18548 * 0.02562 * 11 10 9 13 13 O 1.35669 * 119.81619 * 179.97438 * 12 11 10 14 14 C 1.42900 * 117.00076 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47399 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47005 * 64.99889 * 15 14 13 17 17 C 1.34772 * 120.00288 * 180.02562 * 16 15 14 18 18 O 1.21594 * 119.99578 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00477 * 180.02562 * 17 16 15 20 20 C 1.48044 * 125.64654 * 359.68843 * 19 17 16 21 21 C 1.53689 * 103.47680 * 156.61951 * 20 19 17 22 22 H 1.08997 * 108.27202 * 285.75789 * 21 20 19 23 23 C 1.50034 * 114.88013 * 164.05819 * 21 20 19 24 24 C 1.49625 * 113.23788 * 281.56072 * 23 21 20 25 25 C 1.29190 * 123.39092 * 347.39314 * 24 23 21 26 26 C 1.49093 * 124.68199 * 1.94772 * 25 24 23 27 27 C 1.53162 * 112.89729 * 342.21430 * 26 25 24 28 28 H 1.09000 * 112.88633 * 273.78708 * 27 26 25 29 29 C 1.47277 * 125.65160 * 180.02562 * 19 17 16 30 30 C 1.39315 * 120.36267 * 0.27560 * 12 11 10 31 31 C 1.36433 * 120.18621 * 359.43812 * 30 12 11 32 32 H 0.96997 * 120.00116 * 359.97438 * 1 2 3 33 33 H 1.08001 * 120.08912 * 0.02562 * 10 9 7 34 34 H 1.07997 * 119.91083 * 179.97438 * 11 10 9 35 35 H 1.08998 * 109.47207 * 300.00267 * 14 13 12 36 36 H 1.09005 * 109.47192 * 59.99723 * 14 13 12 37 37 H 1.09004 * 109.47032 * 184.99750 * 15 14 13 38 38 H 1.08994 * 109.46824 * 305.00093 * 15 14 13 39 39 H 0.97009 * 119.99735 * 0.02562 * 16 15 14 40 40 H 1.08998 * 110.59962 * 275.23457 * 20 19 17 41 41 H 1.09000 * 110.60056 * 38.18419 * 20 19 17 42 42 H 1.09002 * 108.74235 * 160.58890 * 23 21 20 43 43 H 1.08999 * 108.72243 * 42.52177 * 23 21 20 44 44 H 1.07999 * 118.30225 * 167.41782 * 24 23 21 45 45 H 1.08004 * 117.65937 * 181.92335 * 25 24 23 46 46 H 1.09001 * 108.79572 * 221.33005 * 26 25 24 47 47 H 1.08995 * 108.79440 * 103.09422 * 26 25 24 48 48 H 1.09003 * 110.01106 * 296.82893 * 29 19 17 49 49 H 1.09005 * 110.01011 * 58.19585 * 29 19 17 50 50 H 1.07999 * 119.90529 * 179.70384 * 30 12 11 51 51 H 1.08003 * 120.09700 * 180.27864 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0964 1.6966 -1.2125 5 1 1.2777 2.7465 0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0083 -1.2114 -0.0005 8 1 3.0490 -1.2342 0.2872 9 6 1.3536 -2.4046 -0.3774 10 6 1.8265 -3.6480 0.0850 11 6 1.1886 -4.7962 -0.2842 12 6 0.0728 -4.7410 -1.1165 13 8 -0.5555 -5.8873 -1.4793 14 6 -1.6931 -5.7609 -2.3349 15 6 -2.2634 -7.1488 -2.6337 16 7 -2.7735 -7.7440 -1.3961 17 6 -3.3255 -8.9733 -1.4170 18 8 -3.3996 -9.5886 -2.4631 19 7 -3.7953 -9.5207 -0.2785 20 6 -3.7634 -8.8886 1.0598 21 6 -4.8965 -9.5980 1.8180 22 1 -5.8475 -9.2167 1.4464 23 6 -4.8602 -9.4304 3.3086 24 6 -3.8563 -10.3152 3.9779 25 6 -3.2669 -11.2989 3.3829 26 6 -3.4656 -11.6665 1.9517 27 6 -4.7377 -11.0602 1.3518 28 1 -5.6218 -11.6741 1.5240 29 6 -4.4191 -10.8494 -0.1585 30 6 -0.3976 -3.5155 -1.5833 31 6 0.2253 -2.3577 -1.2188 32 1 -0.4850 0.8400 0.0004 33 1 2.6917 -3.6925 0.7300 34 1 1.5501 -5.7506 0.0691 35 1 -2.4526 -5.1539 -1.8422 36 1 -1.3947 -5.2825 -3.2678 37 1 -3.0751 -7.0603 -3.3558 38 1 -1.4784 -7.7832 -3.0453 39 1 -2.7140 -7.2532 -0.5614 40 1 -2.8038 -9.0667 1.5452 41 1 -3.9636 -7.8199 0.9841 42 1 -5.8481 -9.6556 3.7105 43 1 -4.6200 -8.3923 3.5381 44 1 -3.6120 -10.1217 5.0119 45 1 -2.5809 -11.8977 3.9638 46 1 -3.5227 -12.7521 1.8726 47 1 -2.6065 -11.3194 1.3776 48 1 -5.3392 -10.8835 -0.7419 49 1 -3.7286 -11.6183 -0.5052 50 1 -1.2604 -3.4817 -2.2320 51 1 -0.1433 -1.4081 -1.5779 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076088417.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:25 Heat of formation + Delta-G solvation = -46.034271 kcal Electronic energy + Delta-G solvation = -30854.377905 eV Core-core repulsion = 26718.046178 eV Total energy + Delta-G solvation = -4136.331727 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 356.189 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.80707 -40.61805 -39.97837 -38.27502 -36.27155 -35.96034 -35.11079 -32.73412 -32.29293 -31.54104 -31.18853 -29.99640 -28.36294 -26.72506 -26.01555 -24.31365 -23.33228 -22.85855 -22.08756 -21.84206 -21.11818 -19.26466 -19.19174 -18.75759 -18.31101 -17.42059 -17.31955 -17.10661 -16.67798 -16.28445 -16.16671 -15.76200 -15.51601 -15.29599 -14.90848 -14.81949 -14.75159 -14.50786 -14.25207 -14.05767 -13.77814 -13.69970 -13.62563 -13.57935 -13.20188 -13.07119 -12.80011 -12.77680 -12.73773 -12.72157 -12.50033 -12.28347 -11.84146 -11.67652 -11.60522 -11.39208 -11.30013 -11.20654 -10.99318 -10.85678 -10.31391 -9.82128 -9.55015 -9.53445 -8.90270 -8.59578 -6.21596 0.95556 1.06341 1.40157 1.46467 1.50192 1.53612 1.55208 2.05524 2.23051 2.53458 2.73428 2.91087 3.39838 3.51247 3.66692 3.71801 3.82532 4.10764 4.13303 4.26084 4.30731 4.33322 4.35578 4.39754 4.44781 4.46333 4.50446 4.53408 4.60304 4.68587 4.76188 4.79822 4.92563 4.93544 4.96576 5.03425 5.07652 5.11762 5.16220 5.19674 5.31355 5.37816 5.38321 5.40171 5.53925 5.67538 5.83177 5.96022 5.99011 6.07591 6.12968 6.25003 6.56644 6.79522 6.85795 6.96356 7.10715 7.45503 8.36851 Molecular weight = 356.19amu Principal moments of inertia in cm(-1) A = 0.013484 B = 0.001937 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.005160 B =14450.946378 C =15607.920856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.035 3.965 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.261 1.261 7 C -0.500 4.500 8 H 0.074 0.926 9 C 0.055 3.945 10 C -0.206 4.206 11 C -0.120 4.120 12 C 0.003 3.997 13 O -0.331 6.331 14 C 0.053 3.947 15 C 0.151 3.849 16 N -0.733 5.733 17 C 0.716 3.284 18 O -0.635 6.635 19 N -0.637 5.637 20 C 0.103 3.897 21 C -0.088 4.088 22 H 0.087 0.913 23 C -0.077 4.077 24 C -0.156 4.156 25 C -0.165 4.165 26 C -0.087 4.087 27 C -0.079 4.079 28 H 0.127 0.873 29 C 0.123 3.877 30 C -0.174 4.174 31 C -0.156 4.156 32 H 0.287 0.713 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.406 0.594 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.114 0.886 45 H 0.105 0.895 46 H 0.083 0.917 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.060 0.940 50 H 0.121 0.879 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.948 -17.411 5.664 22.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.179 4.179 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.530 4.530 8 H 0.093 0.907 9 C 0.053 3.947 10 C -0.226 4.226 11 C -0.138 4.138 12 C -0.041 4.041 13 O -0.247 6.247 14 C -0.023 4.023 15 C 0.027 3.973 16 N -0.389 5.389 17 C 0.418 3.582 18 O -0.517 6.517 19 N -0.375 5.375 20 C -0.019 4.019 21 C -0.107 4.107 22 H 0.105 0.895 23 C -0.114 4.114 24 C -0.174 4.174 25 C -0.183 4.183 26 C -0.124 4.124 27 C -0.097 4.097 28 H 0.145 0.855 29 C 0.000 4.000 30 C -0.192 4.192 31 C -0.175 4.175 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.135 0.865 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.082 0.918 39 H 0.242 0.758 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.131 0.869 45 H 0.123 0.877 46 H 0.101 0.899 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.078 0.922 50 H 0.139 0.861 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.116 -17.845 4.872 22.676 hybrid contribution 0.605 1.248 0.208 1.403 sum -12.511 -16.597 5.080 21.396 Atomic orbital electron populations 1.69870 1.08821 1.30434 1.36503 1.26680 0.95499 1.04299 0.91419 0.85297 0.78803 0.75929 0.79949 1.18691 1.19301 1.18486 1.19686 0.98339 0.92490 1.42471 0.90750 1.17952 0.92797 0.93121 0.90873 1.20779 1.03681 0.92295 1.05816 1.19859 0.95684 0.98003 1.00301 1.18605 0.97250 0.84385 1.03883 1.85843 1.43460 1.29568 1.65816 1.22957 0.87346 0.96910 0.95068 1.21235 0.98336 0.91665 0.86070 1.45056 1.64332 1.16849 1.12652 1.15584 0.78362 0.81407 0.82867 1.90878 1.65677 1.63893 1.31250 1.47743 1.63408 1.19760 1.06548 1.22361 0.99968 0.97911 0.81655 1.21252 0.98543 0.95084 0.95816 0.89463 1.19593 0.99711 1.00121 0.92018 1.22036 0.98421 0.96573 1.00405 1.21791 1.01141 0.99018 0.96316 1.20361 0.96880 1.01496 0.93683 1.22463 0.99402 0.96551 0.91334 0.85547 1.22373 0.97182 0.82720 0.97698 1.20828 1.02014 0.92279 1.04124 1.20921 0.99282 0.96918 1.00406 0.90253 0.87489 0.86519 0.91356 0.89990 0.88457 0.91813 0.75832 0.91602 0.90160 0.88684 0.90068 0.86852 0.87725 0.89875 0.92451 0.91793 0.92196 0.86089 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.73 10.96 21.82 0.24 -42.49 16 2 C 0.04 1.75 5.13 85.23 0.44 2.19 16 3 Si 0.98 37.86 29.60 68.60 2.03 39.89 16 4 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 5 H -0.27 -9.81 7.11 99.48 0.71 -9.11 16 6 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 7 C -0.50 -26.74 9.04 23.40 0.21 -26.53 16 8 H 0.07 3.84 7.91 -2.91 -0.02 3.81 16 9 C 0.05 2.92 5.57 -21.28 -0.12 2.80 16 10 C -0.21 -10.03 9.74 22.48 0.22 -9.81 16 11 C -0.12 -5.32 9.92 22.11 0.22 -5.10 16 12 C 0.00 0.11 6.71 22.79 0.15 0.26 16 13 O -0.33 -11.99 10.07 -89.86 -0.90 -12.90 16 14 C 0.05 1.47 4.86 71.98 0.35 1.82 16 15 C 0.15 3.89 6.06 86.38 0.52 4.41 16 16 N -0.73 -19.12 5.46 -478.53 -2.61 -21.73 16 17 C 0.72 20.70 8.49 179.06 1.52 22.22 16 18 O -0.63 -23.05 16.67 -4.01 -0.07 -23.12 16 19 N -0.64 -14.13 3.33 -826.93 -2.76 -16.89 16 20 C 0.10 1.75 5.56 86.31 0.48 2.23 16 21 C -0.09 -1.06 2.62 -11.08 -0.03 -1.09 16 22 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 23 C -0.08 -0.77 5.59 28.56 0.16 -0.61 16 24 C -0.16 -1.85 9.88 27.14 0.27 -1.58 16 25 C -0.16 -2.12 9.77 26.98 0.26 -1.86 16 26 C -0.09 -1.14 4.65 29.40 0.14 -1.01 16 27 C -0.08 -0.93 3.94 -9.34 -0.04 -0.97 16 28 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 29 C 0.12 2.22 5.97 87.20 0.52 2.75 16 30 C -0.17 -7.71 8.96 22.11 0.20 -7.51 16 31 C -0.16 -8.00 8.64 22.48 0.19 -7.80 16 32 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 33 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 34 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 35 H 0.07 1.81 7.66 -2.39 -0.02 1.79 16 36 H 0.08 2.14 7.63 -2.38 -0.02 2.12 16 37 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.41 9.76 6.99 -92.70 -0.65 9.11 16 40 H 0.07 1.22 7.63 -2.39 -0.02 1.21 16 41 H 0.08 1.28 7.36 -2.39 -0.02 1.26 16 42 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.08 0.80 8.10 -2.39 -0.02 0.78 16 44 H 0.11 1.18 8.06 -2.91 -0.02 1.15 16 45 H 0.10 1.25 8.06 -2.91 -0.02 1.22 16 46 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.06 0.99 7.02 -2.39 -0.02 0.98 16 48 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.06 1.20 7.69 -2.38 -0.02 1.18 16 50 H 0.12 4.59 6.27 -2.91 -0.02 4.58 16 51 H 0.11 5.68 6.16 -2.91 -0.02 5.66 16 Total: -1.00 -66.24 406.47 1.89 -64.35 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: 0.29 Total: 38.07 kcal Atomic # 6 Polarization: -30.87 SS G_CDS: 5.67 Total: -25.20 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -5.13 Total: -81.11 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -0.97 Total: -36.01 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -66.24 1.89 -64.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076088417.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.318 kcal (2) G-P(sol) polarization free energy of solvation -66.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds