Wall clock time and date at job start Tue Mar 31 2020 06:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86805 * 119.99705 * 2 1 4 4 H 1.48503 * 109.47219 * 269.99978 * 3 2 1 5 5 H 1.48496 * 109.47038 * 29.99803 * 3 2 1 6 6 H 1.48501 * 109.47228 * 150.00117 * 3 2 1 7 7 C 1.39893 * 120.00601 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99965 * 162.35964 * 7 2 1 9 9 C 1.41212 * 119.99624 * 342.64087 * 7 2 1 10 10 C 1.40839 * 120.17570 * 334.97859 * 9 7 2 11 11 C 1.36440 * 119.80797 * 179.74184 * 10 9 7 12 12 C 1.39318 * 120.18521 * 0.51736 * 11 10 9 13 13 O 1.35673 * 119.81799 * 179.73371 * 12 11 10 14 14 C 1.42903 * 116.99802 * 0.02562 * 13 12 11 15 15 C 1.53002 * 109.46841 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.47019 * 64.99738 * 15 14 13 17 17 C 1.34777 * 120.00046 * 179.97438 * 16 15 14 18 18 O 1.21582 * 119.99898 * 0.02562 * 17 16 15 19 19 N 1.34771 * 120.00332 * 180.02562 * 17 16 15 20 20 C 1.48447 * 125.76203 * 359.69392 * 19 17 16 21 21 C 1.53087 * 103.81727 * 204.35530 * 20 19 17 22 22 H 1.09005 * 111.01188 * 77.54845 * 21 20 19 23 23 C 1.51994 * 116.05285 * 205.70961 * 21 20 19 24 24 C 1.51130 * 107.49135 * 164.78083 * 23 21 20 25 25 C 1.29776 * 124.36737 * 341.72070 * 24 23 21 26 26 C 1.49714 * 124.25450 * 358.51723 * 25 24 23 27 27 C 1.51879 * 108.22613 * 342.84756 * 26 25 24 28 28 H 1.08998 * 111.14949 * 292.89527 * 27 26 25 29 29 C 1.48019 * 125.77033 * 180.02562 * 19 17 16 30 30 C 1.39311 * 120.36471 * 359.76165 * 12 11 10 31 31 C 1.36443 * 120.18319 * 359.97438 * 30 12 11 32 32 H 0.96997 * 120.00434 * 359.97438 * 1 2 3 33 33 H 1.07993 * 120.09771 * 359.97438 * 10 9 7 34 34 H 1.08000 * 119.90858 * 180.22958 * 11 10 9 35 35 H 1.09000 * 109.47055 * 299.99493 * 14 13 12 36 36 H 1.08996 * 109.46921 * 60.00064 * 14 13 12 37 37 H 1.08998 * 109.47167 * 185.00232 * 15 14 13 38 38 H 1.09003 * 109.47512 * 305.00247 * 15 14 13 39 39 H 0.96998 * 119.99776 * 0.02562 * 16 15 14 40 40 H 1.09004 * 110.58291 * 323.00678 * 20 19 17 41 41 H 1.08998 * 110.58201 * 85.90540 * 20 19 17 42 42 H 1.09005 * 109.85173 * 284.27915 * 23 21 20 43 43 H 1.08996 * 109.85306 * 45.27961 * 23 21 20 44 44 H 1.08008 * 117.81325 * 161.74539 * 24 23 21 45 45 H 1.07997 * 117.85037 * 179.09903 * 25 24 23 46 46 H 1.08996 * 110.13941 * 222.73365 * 26 25 24 47 47 H 1.09002 * 108.82732 * 102.19349 * 26 25 24 48 48 H 1.09007 * 110.10894 * 301.84913 * 29 19 17 49 49 H 1.08995 * 110.11460 * 63.50105 * 29 19 17 50 50 H 1.07998 * 119.90931 * 180.02562 * 30 12 11 51 51 H 1.08001 * 120.09275 * 179.97438 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4401 2.6527 0.7000 6 1 3.5403 1.4403 0.7000 7 6 2.0084 -1.2114 -0.0005 8 1 3.0503 -1.2332 -0.2840 9 6 1.3506 -2.4067 0.3638 10 6 0.2202 -2.3652 1.2028 11 6 -0.4127 -3.5242 1.5459 12 6 0.0627 -4.7471 1.0774 13 8 -0.5693 -5.8955 1.4275 14 6 -1.7124 -5.7740 2.2764 15 6 -2.2869 -7.1634 2.5600 16 7 -1.3153 -7.9461 3.3279 17 6 -1.6070 -9.2097 3.6948 18 8 -2.6764 -9.7003 3.3881 19 7 -0.7134 -9.9296 4.4017 20 6 0.6266 -9.4626 4.8374 21 6 1.4258 -10.7566 5.0119 22 1 1.7446 -11.1521 4.0475 23 6 2.5869 -10.6972 5.9910 24 6 2.9915 -12.1196 6.3026 25 6 2.2424 -13.1577 6.0897 26 6 0.8540 -13.0951 5.5330 27 6 0.3490 -11.6698 5.6752 28 1 0.2132 -11.4034 6.7234 29 6 -0.8996 -11.3218 4.8688 30 6 1.1837 -4.7973 0.2518 31 6 1.8249 -3.6471 -0.1050 32 1 -0.4850 0.8400 0.0004 33 1 -0.1468 -1.4185 1.5706 34 1 -1.2819 -3.4940 2.1862 35 1 -1.4198 -5.3030 3.2148 36 1 -2.4680 -5.1627 1.7830 37 1 -3.2088 -7.0654 3.1332 38 1 -2.4971 -7.6691 1.6176 39 1 -0.4623 -7.5546 3.5729 40 1 1.0800 -8.8319 4.0726 41 1 0.5568 -8.9278 5.7846 42 1 3.4243 -10.1643 5.5403 43 1 2.2747 -10.1923 6.9051 44 1 3.9693 -12.2829 6.7314 45 1 2.6436 -14.1289 6.3388 46 1 0.2001 -13.7757 6.0782 47 1 0.8844 -13.3737 4.4797 48 1 -1.7850 -11.3897 5.5010 49 1 -0.9947 -11.9938 4.0160 50 1 1.5456 -5.7493 -0.1075 51 1 2.6941 -3.6877 -0.7447 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076088420.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:34 Heat of formation + Delta-G solvation = -31.015912 kcal Electronic energy + Delta-G solvation = -30522.174529 eV Core-core repulsion = 26386.494047 eV Total energy + Delta-G solvation = -4135.680482 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 356.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.87971 -39.33925 -38.73245 -36.62119 -35.76160 -34.67757 -33.33628 -32.03806 -31.34288 -29.81873 -29.57768 -28.61063 -27.56607 -25.51950 -24.80834 -22.98853 -22.03497 -21.31875 -21.04839 -20.29102 -20.11093 -18.77294 -18.10903 -17.41266 -17.11613 -16.52077 -16.06423 -15.71871 -15.36795 -15.31438 -14.83467 -14.53426 -14.51605 -14.03765 -13.97971 -13.82416 -13.45160 -13.31882 -13.05948 -12.92461 -12.83456 -12.47852 -12.43746 -12.31313 -12.18188 -12.08044 -11.85601 -11.56207 -11.17184 -11.14472 -11.10093 -11.01084 -10.79301 -10.61611 -10.54232 -10.21184 -9.95841 -9.83995 -9.42234 -9.40723 -9.17328 -9.04931 -8.64407 -7.69870 -7.05805 -6.76533 -4.29213 1.87427 2.45988 2.73397 2.92459 3.05679 3.09180 3.18037 3.18393 3.74251 3.91061 3.92276 4.02931 4.20365 4.34409 4.57985 4.60810 4.80155 4.87678 4.95847 5.01182 5.02003 5.05874 5.22417 5.28551 5.30819 5.37181 5.45694 5.50988 5.56707 5.59982 5.61524 5.64214 5.68109 5.71506 5.88254 5.97608 6.02409 6.07189 6.23422 6.24162 6.48848 6.52522 6.67537 6.84974 6.92855 7.03050 7.24026 7.36471 7.51581 7.86431 7.90091 7.96238 8.10975 8.39118 8.55699 8.60733 8.86428 8.94888 10.18325 Molecular weight = 356.19amu Principal moments of inertia in cm(-1) A = 0.015469 B = 0.001770 C = 0.001637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.631356 B =15812.537750 C =17104.731187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.088 3.912 10 C -0.134 4.134 11 C -0.173 4.173 12 C -0.012 4.012 13 O -0.327 6.327 14 C 0.055 3.945 15 C 0.144 3.856 16 N -0.736 5.736 17 C 0.723 3.277 18 O -0.594 6.594 19 N -0.641 5.641 20 C 0.107 3.893 21 C -0.104 4.104 22 H 0.090 0.910 23 C -0.078 4.078 24 C -0.154 4.154 25 C -0.156 4.156 26 C -0.077 4.077 27 C -0.106 4.106 28 H 0.087 0.913 29 C 0.138 3.862 30 C -0.112 4.112 31 C -0.197 4.197 32 H 0.280 0.720 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.401 0.599 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.069 0.931 49 H 0.067 0.933 50 H 0.096 0.904 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.930 -19.534 13.588 23.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.086 3.914 10 C -0.154 4.154 11 C -0.192 4.192 12 C -0.055 4.055 13 O -0.243 6.243 14 C -0.022 4.022 15 C 0.019 3.981 16 N -0.391 5.391 17 C 0.425 3.575 18 O -0.473 6.473 19 N -0.380 5.380 20 C -0.016 4.016 21 C -0.124 4.124 22 H 0.108 0.892 23 C -0.115 4.115 24 C -0.172 4.172 25 C -0.174 4.174 26 C -0.114 4.114 27 C -0.125 4.125 28 H 0.106 0.894 29 C 0.015 3.985 30 C -0.130 4.130 31 C -0.217 4.217 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.236 0.764 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.114 0.886 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.896 -19.841 13.222 23.859 hybrid contribution 0.678 1.228 0.153 1.411 sum 1.574 -18.613 13.375 22.974 Atomic orbital electron populations 1.69831 1.07526 1.29123 1.36072 1.25883 0.94718 1.01258 0.92364 0.86341 0.80619 0.80724 0.79200 1.19545 1.20167 1.18516 1.19465 0.97963 0.91150 1.40658 0.90505 1.17604 0.91852 0.92184 0.89799 1.20943 0.98445 0.96477 0.99494 1.20612 1.01274 0.92928 1.04351 1.18536 0.97566 0.83745 1.05643 1.85835 1.41805 1.30957 1.65749 1.22723 0.89163 0.95768 0.94534 1.21298 0.90932 0.89747 0.96079 1.45093 1.21645 1.12875 1.59534 1.15396 0.82908 0.80878 0.78342 1.90913 1.23784 1.71228 1.61369 1.48028 1.16844 1.14937 1.58241 1.22048 0.82641 0.96618 1.00321 1.22194 0.94999 0.95418 0.99744 0.89176 1.20407 0.97520 0.94814 0.98760 1.22348 0.99662 0.94350 1.00875 1.22044 0.95946 0.98518 1.00901 1.20115 0.94106 0.95545 1.01647 1.22079 0.94142 0.96147 1.00086 0.89420 1.21470 0.97407 0.81787 0.97839 1.19602 0.95544 0.97606 1.00278 1.20595 1.03167 0.92265 1.05651 0.90951 0.86146 0.88751 0.92451 0.91126 0.90096 0.90700 0.76429 0.90283 0.91139 0.90272 0.90206 0.87780 0.87774 0.90444 0.90313 0.91305 0.91475 0.88617 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.40 10.96 55.54 0.61 -19.79 16 2 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.39 29.59 -169.99 -5.03 13.36 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.46 -12.05 9.04 -37.83 -0.34 -12.39 16 8 H 0.08 1.92 7.90 -52.49 -0.41 1.51 16 9 C 0.09 2.30 5.57 -106.81 -0.59 1.70 16 10 C -0.13 -3.39 8.64 -39.25 -0.34 -3.73 16 11 C -0.17 -3.89 8.96 -39.83 -0.36 -4.25 16 12 C -0.01 -0.26 6.71 -38.78 -0.26 -0.52 16 13 O -0.33 -6.20 10.07 -18.72 -0.19 -6.39 16 14 C 0.05 0.81 4.86 37.16 0.18 0.99 16 15 C 0.14 1.94 6.06 -4.04 -0.02 1.92 16 16 N -0.74 -9.79 5.47 -65.23 -0.36 -10.15 16 17 C 0.72 10.51 8.50 -86.92 -0.74 9.77 16 18 O -0.59 -10.76 16.68 5.29 0.09 -10.67 16 19 N -0.64 -7.22 3.37 -176.74 -0.60 -7.81 16 20 C 0.11 0.89 6.18 -2.92 -0.02 0.88 16 21 C -0.10 -0.74 2.65 -89.48 -0.24 -0.98 16 22 H 0.09 0.72 8.07 -51.93 -0.42 0.30 16 23 C -0.08 -0.46 5.76 -28.18 -0.16 -0.62 16 24 C -0.15 -0.92 9.77 -35.47 -0.35 -1.27 16 25 C -0.16 -0.92 9.73 -36.16 -0.35 -1.27 16 26 C -0.08 -0.45 5.61 -28.93 -0.16 -0.61 16 27 C -0.11 -0.72 2.55 -89.76 -0.23 -0.95 16 28 H 0.09 0.58 8.04 -51.93 -0.42 0.16 16 29 C 0.14 1.29 6.58 -3.38 -0.02 1.27 16 30 C -0.11 -2.51 9.92 -39.83 -0.40 -2.91 16 31 C -0.20 -4.74 9.74 -39.25 -0.38 -5.13 16 32 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 33 H 0.12 3.14 6.17 -52.49 -0.32 2.81 16 34 H 0.09 1.87 6.27 -52.49 -0.33 1.54 16 35 H 0.06 0.81 7.65 -51.93 -0.40 0.41 16 36 H 0.07 1.03 7.65 -51.93 -0.40 0.64 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.40 4.87 6.98 -40.82 -0.29 4.59 16 40 H 0.08 0.68 7.34 -51.93 -0.38 0.30 16 41 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.54 8.06 -52.48 -0.42 0.11 16 45 H 0.10 0.52 8.06 -52.49 -0.42 0.09 16 46 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.47 8.13 -51.93 -0.42 0.05 16 48 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 49 H 0.07 0.66 8.01 -51.93 -0.42 0.24 16 50 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 51 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 409.18 15.07 6.17 6.17 Total: -1.00 -30.57 409.18 -12.17 -42.74 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -7.99 Total: 8.87 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -4.87 Total: -16.33 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: -0.34 Total: -37.75 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.10 Total: -17.06 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -30.57 -12.17 -42.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076088420.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.724 kcal (2) G-P(sol) polarization free energy of solvation -30.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds