Wall clock time and date at job start Tue Mar 31 2020 06:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30890 * 1 3 3 Si 1.86793 * 119.99738 * 2 1 4 4 H 1.48505 * 109.47377 * 269.99920 * 3 2 1 5 5 H 1.48505 * 109.47518 * 30.00098 * 3 2 1 6 6 H 1.48500 * 109.47070 * 149.99882 * 3 2 1 7 7 C 1.39885 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00247 * 197.92936 * 7 2 1 9 9 C 1.41217 * 119.99759 * 17.92843 * 7 2 1 10 10 C 1.40827 * 120.18275 * 24.54107 * 9 7 2 11 11 C 1.36445 * 119.81560 * 180.02562 * 10 9 7 12 12 C 1.39310 * 120.17881 * 359.97438 * 11 10 9 13 13 O 1.35679 * 119.81357 * 179.97438 * 12 11 10 14 14 C 1.42903 * 117.00121 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47045 * 180.02562 * 14 13 12 16 16 N 1.46497 * 109.47198 * 65.00035 * 15 14 13 17 17 C 1.34776 * 119.99677 * 179.97438 * 16 15 14 18 18 O 1.21591 * 120.00299 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00027 * 179.97438 * 17 16 15 20 20 C 1.48441 * 125.76415 * 359.97438 * 19 17 16 21 21 C 1.53338 * 103.69741 * 155.56237 * 20 19 17 22 22 H 1.09009 * 111.22330 * 282.74627 * 21 20 19 23 23 C 1.51991 * 115.27546 * 154.21233 * 21 20 19 24 24 C 1.51127 * 107.49072 * 195.74556 * 23 21 20 25 25 C 1.29779 * 124.36541 * 18.27282 * 24 23 21 26 26 C 1.51154 * 124.29430 * 0.93348 * 25 24 23 27 27 C 1.51865 * 107.48078 * 18.04524 * 26 25 24 28 28 H 1.08997 * 111.16342 * 66.31106 * 27 26 25 29 29 C 1.48012 * 125.76640 * 179.97438 * 19 17 16 30 30 C 1.39314 * 120.37029 * 0.25589 * 12 11 10 31 31 C 1.36441 * 120.18052 * 359.48441 * 30 12 11 32 32 H 0.96998 * 119.99798 * 0.02562 * 1 2 3 33 33 H 1.08004 * 120.09587 * 0.04205 * 10 9 7 34 34 H 1.07997 * 119.90740 * 179.97438 * 11 10 9 35 35 H 1.09002 * 109.46535 * 60.00394 * 14 13 12 36 36 H 1.08998 * 109.47052 * 300.00819 * 14 13 12 37 37 H 1.09006 * 109.47224 * 305.00134 * 15 14 13 38 38 H 1.09003 * 109.46765 * 185.00384 * 15 14 13 39 39 H 0.96996 * 120.00393 * 359.97438 * 16 15 14 40 40 H 1.09004 * 110.58406 * 37.00402 * 20 19 17 41 41 H 1.09001 * 110.57649 * 274.11025 * 20 19 17 42 42 H 1.09007 * 109.84623 * 315.23855 * 23 21 20 43 43 H 1.08995 * 109.85267 * 76.24250 * 23 21 20 44 44 H 1.08003 * 117.81743 * 198.25140 * 24 23 21 45 45 H 1.08002 * 117.84996 * 180.90651 * 25 24 23 46 46 H 1.09006 * 109.85565 * 258.54927 * 26 25 24 47 47 H 1.09002 * 109.91261 * 137.57163 * 26 25 24 48 48 H 1.09005 * 110.11954 * 58.13648 * 29 19 17 49 49 H 1.09002 * 110.12131 * 296.48037 * 29 19 17 50 50 H 1.07992 * 119.90616 * 179.72066 * 30 12 11 51 51 H 1.08000 * 120.09182 * 180.25333 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4402 2.6527 0.7001 6 1 3.5403 1.4402 0.7001 7 6 2.0084 -1.2114 0.0005 8 1 3.0490 -1.2340 0.2885 9 6 1.3537 -2.4049 -0.3754 10 6 0.2245 -2.3585 -1.2157 11 6 -0.4025 -3.5162 -1.5738 12 6 0.0717 -4.7417 -1.1110 13 8 -0.5579 -5.8882 -1.4713 14 6 -0.0205 -7.1109 -0.9628 15 6 -0.8560 -8.2865 -1.4733 16 7 -0.7261 -8.3820 -2.9294 17 6 -1.3786 -9.3507 -3.6020 18 8 -2.0754 -10.1450 -3.0004 19 7 -1.2595 -9.4383 -4.9417 20 6 -0.4485 -8.5400 -5.8012 21 6 -0.1507 -9.3938 -7.0396 22 1 0.6380 -10.1190 -6.8386 23 6 0.1135 -8.6140 -8.3172 24 6 -0.0051 -9.5811 -9.4724 25 6 -0.6007 -10.7322 -9.4058 26 6 -1.2822 -11.2682 -8.1677 27 6 -1.5310 -10.0928 -7.2389 28 1 -2.2539 -9.3987 -7.6675 29 6 -1.9153 -10.4465 -5.8044 30 6 1.1852 -4.7960 -0.2755 31 6 1.8269 -3.6479 0.0876 32 1 -0.4850 0.8400 -0.0004 33 1 -0.1439 -1.4094 -1.5759 34 1 -1.2688 -3.4824 -2.2178 35 1 -0.0453 -7.0931 0.1268 36 1 1.0095 -7.2235 -1.3010 37 1 -1.9024 -8.1294 -1.2115 38 1 -0.5015 -9.2100 -1.0155 39 1 -0.1705 -7.7482 -3.4094 40 1 0.4767 -8.2599 -5.2974 41 1 -1.0201 -7.6534 -6.0755 42 1 -0.6233 -7.8177 -8.4238 43 1 1.1172 -8.1897 -8.2911 44 1 0.4348 -9.2951 -10.4164 45 1 -0.6104 -11.3474 -10.2935 46 1 -0.6380 -11.9979 -7.6770 47 1 -2.2301 -11.7338 -8.4377 48 1 -2.9974 -10.3968 -5.6832 49 1 -1.5551 -11.4446 -5.5550 50 1 1.5437 -5.7496 0.0825 51 1 2.6924 -3.6920 0.7320 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076088424.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:39 Heat of formation + Delta-G solvation = -30.673772 kcal Electronic energy + Delta-G solvation = -30486.678317 eV Core-core repulsion = 26351.012672 eV Total energy + Delta-G solvation = -4135.665646 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 356.189 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.86584 -39.33028 -38.73387 -36.62642 -35.72530 -34.68198 -33.31604 -32.02731 -31.33642 -30.05151 -29.24987 -28.72123 -27.53107 -25.52183 -24.81055 -23.03312 -22.04922 -21.30011 -20.80237 -20.51251 -20.11097 -18.79444 -18.12511 -17.36074 -17.18008 -16.47633 -16.06275 -15.81380 -15.26405 -15.16021 -14.84131 -14.74883 -14.54829 -14.01542 -13.93929 -13.82962 -13.44061 -13.26312 -13.15051 -12.92249 -12.80915 -12.48017 -12.34986 -12.31823 -12.20601 -12.05483 -11.93466 -11.63820 -11.20981 -11.16492 -11.05657 -10.84663 -10.77354 -10.68292 -10.55010 -10.20121 -10.00075 -9.85840 -9.43243 -9.38814 -9.17601 -9.06233 -8.64388 -7.68466 -7.07880 -6.75817 -4.29304 1.87482 2.45832 2.74210 2.91324 3.06529 3.09691 3.17833 3.18222 3.74591 3.90232 3.92623 4.02395 4.18111 4.34669 4.58153 4.60694 4.77759 4.88022 4.94509 4.99392 5.01661 5.03784 5.19966 5.26496 5.32555 5.37068 5.46066 5.50351 5.56093 5.57156 5.59941 5.63428 5.66288 5.71634 5.87118 5.97007 6.01754 6.03580 6.18633 6.22768 6.48376 6.51783 6.68051 6.92592 6.94272 7.07634 7.14934 7.42135 7.51557 7.75152 7.89785 7.96895 8.16559 8.39839 8.55434 8.61215 8.86449 8.94595 10.18657 Molecular weight = 356.19amu Principal moments of inertia in cm(-1) A = 0.013842 B = 0.001793 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.274980 B =15611.316533 C =17067.247013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.088 3.912 10 C -0.135 4.135 11 C -0.118 4.118 12 C -0.011 4.011 13 O -0.326 6.326 14 C 0.054 3.946 15 C 0.143 3.857 16 N -0.736 5.736 17 C 0.723 3.277 18 O -0.594 6.594 19 N -0.642 5.642 20 C 0.106 3.894 21 C -0.103 4.103 22 H 0.090 0.910 23 C -0.079 4.079 24 C -0.154 4.154 25 C -0.157 4.157 26 C -0.076 4.076 27 C -0.107 4.107 28 H 0.088 0.912 29 C 0.138 3.862 30 C -0.166 4.166 31 C -0.198 4.198 32 H 0.280 0.720 33 H 0.125 0.875 34 H 0.096 0.904 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.401 0.599 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.069 0.931 49 H 0.066 0.934 50 H 0.094 0.906 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.456 -17.416 -16.357 23.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.086 3.914 10 C -0.154 4.154 11 C -0.137 4.137 12 C -0.054 4.054 13 O -0.242 6.242 14 C -0.022 4.022 15 C 0.019 3.981 16 N -0.392 5.392 17 C 0.425 3.575 18 O -0.473 6.473 19 N -0.381 5.381 20 C -0.016 4.016 21 C -0.122 4.122 22 H 0.108 0.892 23 C -0.116 4.116 24 C -0.172 4.172 25 C -0.175 4.175 26 C -0.113 4.113 27 C -0.126 4.126 28 H 0.107 0.893 29 C 0.015 3.985 30 C -0.185 4.185 31 C -0.218 4.218 32 H 0.091 0.909 33 H 0.143 0.857 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.236 0.764 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.112 0.888 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.352 -17.838 -15.870 23.914 hybrid contribution 0.849 1.099 -0.047 1.389 sum -0.503 -16.740 -15.917 23.105 Atomic orbital electron populations 1.69837 1.07501 1.29178 1.35851 1.25886 0.94729 1.01258 0.92380 0.86319 0.80454 0.80698 0.79273 1.19318 1.20374 1.18706 1.19474 0.98119 0.91229 1.40463 0.90522 1.17608 0.91839 0.92135 0.89828 1.20978 0.98538 0.96311 0.99565 1.19826 1.00686 0.90256 1.02951 1.18563 0.97057 0.84675 1.05118 1.85864 1.54911 1.12333 1.71112 1.22718 0.96825 0.83737 0.98936 1.21291 1.01440 0.96617 0.78722 1.45085 1.52560 1.33330 1.08181 1.15401 0.80417 0.81795 0.79911 1.90915 1.44648 1.44761 1.66986 1.48029 1.51895 1.33920 1.04223 1.22128 0.95379 0.93221 0.90911 1.22252 0.97775 0.98346 0.93877 0.89170 1.20426 1.02701 0.97056 0.91423 1.22355 1.00042 0.95804 0.98967 1.22335 0.99404 0.97198 0.98566 1.20381 1.00531 0.96748 0.93619 1.22105 0.97461 0.98711 0.94310 0.89340 1.21473 0.97613 0.91639 0.87775 1.20412 0.97935 0.97817 1.02346 1.20563 1.03132 0.92518 1.05566 0.90887 0.85706 0.88562 0.91215 0.92519 0.90670 0.90130 0.76420 0.90575 0.90868 0.90048 0.90331 0.87763 0.87793 0.90291 0.90504 0.91277 0.91519 0.88786 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.40 10.96 55.54 0.61 -19.79 16 2 C 0.07 1.84 5.13 -17.34 -0.09 1.76 16 3 Si 0.91 18.42 29.59 -169.99 -5.03 13.39 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.46 -12.07 9.04 -37.84 -0.34 -12.42 16 8 H 0.08 1.92 7.91 -52.49 -0.41 1.51 16 9 C 0.09 2.31 5.57 -106.80 -0.60 1.71 16 10 C -0.13 -3.43 8.64 -39.25 -0.34 -3.77 16 11 C -0.12 -2.77 9.92 -39.83 -0.40 -3.17 16 12 C -0.01 -0.24 6.71 -38.78 -0.26 -0.50 16 13 O -0.33 -6.18 10.07 -18.74 -0.19 -6.37 16 14 C 0.05 0.79 4.86 37.15 0.18 0.97 16 15 C 0.14 1.92 6.06 -4.05 -0.02 1.89 16 16 N -0.74 -9.76 5.47 -65.23 -0.36 -10.12 16 17 C 0.72 10.51 8.50 -86.92 -0.74 9.77 16 18 O -0.59 -10.75 16.68 5.29 0.09 -10.66 16 19 N -0.64 -7.24 3.37 -176.58 -0.60 -7.83 16 20 C 0.11 0.90 6.17 -2.80 -0.02 0.88 16 21 C -0.10 -0.71 2.70 -89.35 -0.24 -0.95 16 22 H 0.09 0.65 8.07 -51.92 -0.42 0.24 16 23 C -0.08 -0.46 5.71 -28.19 -0.16 -0.62 16 24 C -0.15 -0.91 9.77 -35.47 -0.35 -1.25 16 25 C -0.16 -0.91 9.78 -35.46 -0.35 -1.25 16 26 C -0.08 -0.43 5.71 -28.24 -0.16 -0.59 16 27 C -0.11 -0.74 2.53 -89.76 -0.23 -0.96 16 28 H 0.09 0.62 8.02 -51.93 -0.42 0.21 16 29 C 0.14 1.30 6.58 -3.38 -0.02 1.27 16 30 C -0.17 -3.60 8.96 -39.83 -0.36 -3.96 16 31 C -0.20 -4.73 9.74 -39.25 -0.38 -5.12 16 32 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 33 H 0.13 3.27 6.16 -52.48 -0.32 2.95 16 34 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 35 H 0.07 0.98 7.63 -51.93 -0.40 0.58 16 36 H 0.06 0.77 7.66 -51.93 -0.40 0.37 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.40 4.87 6.98 -40.82 -0.28 4.58 16 40 H 0.08 0.61 7.33 -51.93 -0.38 0.22 16 41 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 42 H 0.08 0.47 8.13 -51.92 -0.42 0.05 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.10 0.53 8.06 -52.48 -0.42 0.11 16 45 H 0.10 0.51 8.06 -52.49 -0.42 0.08 16 46 H 0.08 0.44 8.13 -51.93 -0.42 0.02 16 47 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.07 0.63 8.01 -51.93 -0.42 0.22 16 50 H 0.09 1.74 6.27 -52.49 -0.33 1.41 16 51 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 LS Contribution 409.21 15.07 6.17 6.17 Total: -1.00 -30.62 409.21 -12.16 -42.78 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -7.98 Total: 8.76 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -4.87 Total: -16.32 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.34 Total: -37.74 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.10 Total: -17.03 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -30.62 -12.16 -42.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076088424.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.104 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds