Wall clock time and date at job start Tue Mar 31 2020 06:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30890 * 1 3 3 Si 1.86793 * 119.99738 * 2 1 4 4 H 1.48505 * 109.47377 * 269.99920 * 3 2 1 5 5 H 1.48505 * 109.47518 * 30.00098 * 3 2 1 6 6 H 1.48500 * 109.47070 * 149.99882 * 3 2 1 7 7 C 1.39885 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00247 * 197.92936 * 7 2 1 9 9 C 1.41217 * 119.99759 * 17.92843 * 7 2 1 10 10 C 1.40827 * 120.18275 * 24.54107 * 9 7 2 11 11 C 1.36445 * 119.81560 * 180.02562 * 10 9 7 12 12 C 1.39310 * 120.17881 * 359.97438 * 11 10 9 13 13 O 1.35679 * 119.81357 * 179.97438 * 12 11 10 14 14 C 1.42903 * 117.00121 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47045 * 180.02562 * 14 13 12 16 16 N 1.46497 * 109.47198 * 65.00035 * 15 14 13 17 17 C 1.34776 * 119.99677 * 179.97438 * 16 15 14 18 18 O 1.21591 * 120.00299 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00027 * 179.97438 * 17 16 15 20 20 C 1.48441 * 125.76415 * 359.97438 * 19 17 16 21 21 C 1.53338 * 103.69741 * 155.56237 * 20 19 17 22 22 H 1.09009 * 111.22330 * 282.74627 * 21 20 19 23 23 C 1.51991 * 115.27546 * 154.21233 * 21 20 19 24 24 C 1.51127 * 107.49072 * 195.74556 * 23 21 20 25 25 C 1.29779 * 124.36541 * 18.27282 * 24 23 21 26 26 C 1.51154 * 124.29430 * 0.93348 * 25 24 23 27 27 C 1.51865 * 107.48078 * 18.04524 * 26 25 24 28 28 H 1.08997 * 111.16342 * 66.31106 * 27 26 25 29 29 C 1.48012 * 125.76640 * 179.97438 * 19 17 16 30 30 C 1.39314 * 120.37029 * 0.25589 * 12 11 10 31 31 C 1.36441 * 120.18052 * 359.48441 * 30 12 11 32 32 H 0.96998 * 119.99798 * 0.02562 * 1 2 3 33 33 H 1.08004 * 120.09587 * 0.04205 * 10 9 7 34 34 H 1.07997 * 119.90740 * 179.97438 * 11 10 9 35 35 H 1.09002 * 109.46535 * 60.00394 * 14 13 12 36 36 H 1.08998 * 109.47052 * 300.00819 * 14 13 12 37 37 H 1.09006 * 109.47224 * 305.00134 * 15 14 13 38 38 H 1.09003 * 109.46765 * 185.00384 * 15 14 13 39 39 H 0.96996 * 120.00393 * 359.97438 * 16 15 14 40 40 H 1.09004 * 110.58406 * 37.00402 * 20 19 17 41 41 H 1.09001 * 110.57649 * 274.11025 * 20 19 17 42 42 H 1.09007 * 109.84623 * 315.23855 * 23 21 20 43 43 H 1.08995 * 109.85267 * 76.24250 * 23 21 20 44 44 H 1.08003 * 117.81743 * 198.25140 * 24 23 21 45 45 H 1.08002 * 117.84996 * 180.90651 * 25 24 23 46 46 H 1.09006 * 109.85565 * 258.54927 * 26 25 24 47 47 H 1.09002 * 109.91261 * 137.57163 * 26 25 24 48 48 H 1.09005 * 110.11954 * 58.13648 * 29 19 17 49 49 H 1.09002 * 110.12131 * 296.48037 * 29 19 17 50 50 H 1.07992 * 119.90616 * 179.72066 * 30 12 11 51 51 H 1.08000 * 120.09182 * 180.25333 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4402 2.6527 0.7001 6 1 3.5403 1.4402 0.7001 7 6 2.0084 -1.2114 0.0005 8 1 3.0490 -1.2340 0.2885 9 6 1.3537 -2.4049 -0.3754 10 6 0.2245 -2.3585 -1.2157 11 6 -0.4025 -3.5162 -1.5738 12 6 0.0717 -4.7417 -1.1110 13 8 -0.5579 -5.8882 -1.4713 14 6 -0.0205 -7.1109 -0.9628 15 6 -0.8560 -8.2865 -1.4733 16 7 -0.7261 -8.3820 -2.9294 17 6 -1.3786 -9.3507 -3.6020 18 8 -2.0754 -10.1450 -3.0004 19 7 -1.2595 -9.4383 -4.9417 20 6 -0.4485 -8.5400 -5.8012 21 6 -0.1507 -9.3938 -7.0396 22 1 0.6380 -10.1190 -6.8386 23 6 0.1135 -8.6140 -8.3172 24 6 -0.0051 -9.5811 -9.4724 25 6 -0.6007 -10.7322 -9.4058 26 6 -1.2822 -11.2682 -8.1677 27 6 -1.5310 -10.0928 -7.2389 28 1 -2.2539 -9.3987 -7.6675 29 6 -1.9153 -10.4465 -5.8044 30 6 1.1852 -4.7960 -0.2755 31 6 1.8269 -3.6479 0.0876 32 1 -0.4850 0.8400 -0.0004 33 1 -0.1439 -1.4094 -1.5759 34 1 -1.2688 -3.4824 -2.2178 35 1 -0.0453 -7.0931 0.1268 36 1 1.0095 -7.2235 -1.3010 37 1 -1.9024 -8.1294 -1.2115 38 1 -0.5015 -9.2100 -1.0155 39 1 -0.1705 -7.7482 -3.4094 40 1 0.4767 -8.2599 -5.2974 41 1 -1.0201 -7.6534 -6.0755 42 1 -0.6233 -7.8177 -8.4238 43 1 1.1172 -8.1897 -8.2911 44 1 0.4348 -9.2951 -10.4164 45 1 -0.6104 -11.3474 -10.2935 46 1 -0.6380 -11.9979 -7.6770 47 1 -2.2301 -11.7338 -8.4377 48 1 -2.9974 -10.3968 -5.6832 49 1 -1.5551 -11.4446 -5.5550 50 1 1.5437 -5.7496 0.0825 51 1 2.6924 -3.6920 0.7320 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076088424.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:38 Heat of formation + Delta-G solvation = -46.412970 kcal Electronic energy + Delta-G solvation = -30487.360820 eV Core-core repulsion = 26351.012672 eV Total energy + Delta-G solvation = -4136.348148 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 356.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.68006 -40.60411 -39.98871 -38.27719 -36.48195 -35.95364 -35.08540 -32.61837 -32.19946 -31.63852 -30.93719 -30.05906 -28.20160 -26.72817 -26.16725 -24.29592 -22.74487 -22.59886 -22.20705 -21.84369 -21.10142 -19.32124 -19.27553 -19.00715 -18.76548 -17.55834 -17.05189 -16.88170 -16.48952 -16.28658 -16.27305 -15.72360 -15.52892 -15.35505 -15.04873 -14.92012 -14.70078 -14.17483 -14.06648 -14.00259 -13.90575 -13.69900 -13.59607 -13.50391 -13.26432 -13.07853 -12.96159 -12.79687 -12.71589 -12.62664 -12.39776 -12.36664 -11.74952 -11.69731 -11.61302 -11.41706 -11.22887 -11.16903 -11.06167 -10.87073 -10.30909 -9.86333 -9.55819 -9.53319 -8.90980 -8.58524 -6.21436 0.96693 1.05403 1.40602 1.42248 1.53059 1.53336 1.54205 2.06677 2.23447 2.54910 2.74082 2.91064 3.27537 3.57222 3.72114 3.76930 3.84671 4.09999 4.13204 4.23065 4.27422 4.31482 4.38780 4.39872 4.45105 4.45970 4.50247 4.54667 4.58222 4.72083 4.77669 4.81867 4.85951 4.92540 4.99046 5.02376 5.09138 5.12365 5.16030 5.18292 5.24576 5.30057 5.40284 5.44525 5.60898 5.66613 5.79048 5.90905 5.96414 6.07813 6.08759 6.28867 6.57930 6.81732 6.87434 6.96871 7.11330 7.46463 8.37759 Molecular weight = 356.19amu Principal moments of inertia in cm(-1) A = 0.013842 B = 0.001793 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.274980 B =15611.316533 C =17067.247013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.033 3.967 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.498 4.498 8 H 0.075 0.925 9 C 0.054 3.946 10 C -0.154 4.154 11 C -0.132 4.132 12 C 0.005 3.995 13 O -0.333 6.333 14 C 0.052 3.948 15 C 0.150 3.850 16 N -0.732 5.732 17 C 0.716 3.284 18 O -0.636 6.636 19 N -0.641 5.641 20 C 0.103 3.897 21 C -0.095 4.095 22 H 0.089 0.911 23 C -0.077 4.077 24 C -0.161 4.161 25 C -0.161 4.161 26 C -0.074 4.074 27 C -0.097 4.097 28 H 0.089 0.911 29 C 0.134 3.866 30 C -0.164 4.164 31 C -0.207 4.207 32 H 0.287 0.713 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.407 0.593 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.113 0.887 45 H 0.115 0.885 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.059 0.941 49 H 0.065 0.935 50 H 0.132 0.868 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.620 -18.241 -17.356 25.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.181 4.181 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.528 4.528 8 H 0.094 0.906 9 C 0.052 3.948 10 C -0.173 4.173 11 C -0.150 4.150 12 C -0.039 4.039 13 O -0.249 6.249 14 C -0.024 4.024 15 C 0.025 3.975 16 N -0.388 5.388 17 C 0.418 3.582 18 O -0.518 6.518 19 N -0.379 5.379 20 C -0.019 4.019 21 C -0.114 4.114 22 H 0.107 0.893 23 C -0.114 4.114 24 C -0.179 4.179 25 C -0.179 4.179 26 C -0.111 4.111 27 C -0.116 4.116 28 H 0.107 0.893 29 C 0.011 3.989 30 C -0.182 4.182 31 C -0.227 4.227 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.243 0.757 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.104 0.896 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.099 0.901 47 H 0.104 0.896 48 H 0.077 0.923 49 H 0.083 0.917 50 H 0.149 0.851 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.260 -18.675 -16.905 25.191 hybrid contribution 0.447 1.146 0.227 1.251 sum 0.187 -17.528 -16.678 24.196 Atomic orbital electron populations 1.69896 1.08930 1.30390 1.36648 1.26723 0.95471 1.04462 0.91444 0.85218 0.79034 0.76091 0.79439 1.18729 1.19559 1.18243 1.19710 0.98341 0.92425 1.42356 0.90645 1.17961 0.92703 0.93361 0.90824 1.20891 0.99341 0.96454 1.00626 1.19979 1.01061 0.90618 1.03375 1.18584 0.96441 0.85289 1.03594 1.85864 1.55035 1.12768 1.71225 1.22988 0.97788 0.81840 0.99735 1.21242 1.00476 0.96782 0.78957 1.45035 1.52387 1.33157 1.08212 1.15593 0.80210 0.81592 0.80829 1.90878 1.46443 1.46304 1.68197 1.48133 1.51745 1.34458 1.03572 1.22309 0.95273 0.93130 0.91198 1.22191 0.97569 0.98045 0.93602 0.89288 1.20427 1.03214 0.97020 0.90740 1.22467 1.00254 0.95875 0.99299 1.22452 0.99218 0.97393 0.98836 1.20389 1.01136 0.96221 0.93333 1.22035 0.97421 0.99317 0.92841 0.89299 1.21598 0.96971 0.91294 0.89030 1.20726 0.97257 0.98724 1.01516 1.20801 1.03619 0.92602 1.05630 0.90286 0.87417 0.87528 0.89959 0.90676 0.92153 0.88364 0.75696 0.89864 0.90573 0.89876 0.89600 0.86895 0.86754 0.90112 0.89584 0.92282 0.91692 0.85065 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.61 10.96 21.82 0.24 -43.37 16 2 C 0.03 1.65 5.13 85.23 0.44 2.08 16 3 Si 0.98 38.03 29.59 68.60 2.03 40.06 16 4 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 6 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 7 C -0.50 -26.59 9.04 23.40 0.21 -26.38 16 8 H 0.08 3.87 7.91 -2.91 -0.02 3.85 16 9 C 0.05 2.86 5.57 -21.28 -0.12 2.74 16 10 C -0.15 -8.04 8.64 22.48 0.19 -7.85 16 11 C -0.13 -6.18 9.92 22.11 0.22 -5.96 16 12 C 0.00 0.20 6.71 22.79 0.15 0.35 16 13 O -0.33 -11.93 10.07 -89.97 -0.91 -12.83 16 14 C 0.05 1.37 4.86 71.98 0.35 1.72 16 15 C 0.15 3.73 6.06 86.38 0.52 4.26 16 16 N -0.73 -18.41 5.47 -478.53 -2.62 -21.03 16 17 C 0.72 20.41 8.50 179.05 1.52 21.93 16 18 O -0.64 -23.04 16.68 -4.00 -0.07 -23.11 16 19 N -0.64 -14.01 3.37 -830.84 -2.80 -16.81 16 20 C 0.10 1.59 6.17 86.12 0.53 2.13 16 21 C -0.09 -1.14 2.70 -9.97 -0.03 -1.17 16 22 H 0.09 1.13 8.07 -2.38 -0.02 1.11 16 23 C -0.08 -0.75 5.71 29.65 0.17 -0.58 16 24 C -0.16 -1.57 9.77 27.04 0.26 -1.31 16 25 C -0.16 -1.54 9.78 27.05 0.26 -1.27 16 26 C -0.07 -0.71 5.71 29.62 0.17 -0.54 16 27 C -0.10 -1.21 2.53 -10.24 -0.03 -1.24 16 28 H 0.09 1.13 8.02 -2.39 -0.02 1.11 16 29 C 0.13 2.45 6.58 85.98 0.57 3.01 16 30 C -0.16 -6.76 8.96 22.11 0.20 -6.56 16 31 C -0.21 -9.78 9.74 22.49 0.22 -9.57 16 32 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 33 H 0.11 5.90 6.16 -2.91 -0.02 5.89 16 34 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 35 H 0.08 2.02 7.63 -2.39 -0.02 2.01 16 36 H 0.08 1.76 7.66 -2.39 -0.02 1.74 16 37 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.41 9.16 6.98 -92.71 -0.65 8.51 16 40 H 0.08 1.18 7.33 -2.38 -0.02 1.16 16 41 H 0.08 1.16 8.11 -2.39 -0.02 1.14 16 42 H 0.08 0.81 8.13 -2.38 -0.02 0.79 16 43 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.11 0.91 8.06 -2.91 -0.02 0.89 16 45 H 0.11 0.86 8.06 -2.91 -0.02 0.84 16 46 H 0.08 0.77 8.13 -2.38 -0.02 0.75 16 47 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 49 H 0.06 1.21 8.01 -2.39 -0.02 1.19 16 50 H 0.13 4.37 6.27 -2.91 -0.02 4.35 16 51 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -67.04 409.21 1.99 -65.05 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: 0.29 Total: 36.26 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 5.82 Total: -24.21 kcal Atomic # 7 Polarization: -76.04 SS G_CDS: -5.18 Total: -81.21 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -0.97 Total: -35.94 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -67.04 1.99 -65.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076088424.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.637 kcal (2) G-P(sol) polarization free energy of solvation -67.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds