Wall clock time and date at job start Tue Mar 31 2020 05:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99945 * 2 1 4 4 H 1.48496 * 109.47463 * 270.00130 * 3 2 1 5 5 H 1.48500 * 109.47147 * 30.00609 * 3 2 1 6 6 H 1.48505 * 109.46678 * 150.00141 * 3 2 1 7 7 C 1.37876 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00128 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99686 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47246 * 180.02562 * 9 7 2 11 11 C 1.46497 * 119.99986 * 262.78602 * 10 9 7 12 12 C 1.53001 * 109.47214 * 274.87989 * 11 10 9 13 13 F 1.39897 * 109.47098 * 59.99777 * 12 11 10 14 14 F 1.39902 * 109.47386 * 180.02562 * 12 11 10 15 15 F 1.39906 * 109.47131 * 300.00088 * 12 11 10 16 16 C 1.34773 * 120.00022 * 82.78261 * 10 9 7 17 17 O 1.21525 * 120.00088 * 183.29098 * 16 10 9 18 18 C 1.48081 * 119.99832 * 3.29460 * 16 10 9 19 19 N 1.32809 * 119.72995 * 354.14361 * 18 16 10 20 20 C 1.31561 * 121.63496 * 180.29104 * 19 18 16 21 21 Cl 1.73595 * 119.54495 * 179.74847 * 20 19 18 22 22 C 1.38815 * 120.90636 * 359.72522 * 20 19 18 23 23 C 1.38454 * 119.36425 * 359.97438 * 22 20 19 24 24 C 1.38839 * 118.49192 * 0.02562 * 23 22 20 25 25 Cl 1.73601 * 120.46915 * 179.97438 * 24 23 22 26 26 H 0.97001 * 119.99756 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46930 * 60.00547 * 9 7 2 28 28 H 1.09001 * 109.47563 * 300.00310 * 9 7 2 29 29 H 1.08996 * 109.47451 * 34.88046 * 11 10 9 30 30 H 1.09006 * 109.47078 * 154.87961 * 11 10 9 31 31 H 1.07992 * 120.31590 * 180.02562 * 22 20 19 32 32 H 1.07994 * 120.75558 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.5579 -4.2729 -1.2592 12 6 1.5227 -5.3536 -1.5778 13 9 0.2585 -4.7670 -1.6992 14 9 1.8619 -5.9846 -2.7795 15 9 1.5015 -6.2978 -0.5456 16 6 2.7524 -4.0296 1.1574 17 8 3.5867 -4.9131 1.1507 18 6 2.3392 -3.4110 2.4378 19 7 1.5158 -2.3690 2.4305 20 6 1.1291 -1.7872 3.5453 21 17 0.0565 -0.4243 3.4722 22 6 1.5668 -2.2485 4.7793 23 6 2.4215 -3.3365 4.8332 24 6 2.8131 -3.9307 3.6411 25 17 3.8838 -5.2972 3.6489 26 1 -0.4850 0.8401 0.0004 27 1 0.6242 -2.5566 -0.8904 28 1 0.6247 -2.5571 0.8896 29 1 2.5745 -3.5373 -2.0634 30 1 3.5430 -4.7300 -1.1646 31 1 1.2430 -1.7640 5.6884 32 1 2.7761 -3.7137 5.7809 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076092218.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:30 Heat of formation + Delta-G solvation = -130.446835 kcal Electronic energy + Delta-G solvation = -28243.149156 eV Core-core repulsion = 23456.244223 eV Total energy + Delta-G solvation = -4786.904934 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 356.005 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.67160 -47.22839 -47.11391 -40.51090 -38.66404 -36.53764 -36.03448 -35.34549 -32.79451 -32.43907 -30.88257 -29.31558 -26.96000 -24.76774 -23.49242 -22.98129 -22.62987 -19.90693 -18.20220 -18.11841 -17.36603 -17.06724 -17.00987 -16.25192 -16.13991 -15.29777 -15.21521 -14.84672 -14.40252 -14.10186 -14.03564 -13.66708 -13.60371 -13.53331 -13.31647 -13.29924 -13.19063 -12.49584 -12.41336 -12.17179 -11.95179 -11.80538 -11.57548 -11.17416 -10.95069 -10.86328 -10.80554 -10.62135 -10.21096 -9.83227 -9.77107 -9.48188 -8.72743 -8.63328 -8.28354 -7.94844 -6.03811 -4.03435 0.61840 1.10689 2.02799 2.36340 2.84430 3.14717 3.26257 3.33862 3.36764 3.39326 3.92219 4.27400 4.35357 4.45754 4.47417 4.60931 4.81087 4.84483 4.95024 5.31537 5.33631 5.50398 5.66405 5.69764 5.79834 6.20514 6.45638 7.36611 7.56275 7.78808 7.83684 8.02860 8.20254 8.55967 8.94143 9.56004 11.03622 Molecular weight = 356.00amu Principal moments of inertia in cm(-1) A = 0.008364 B = 0.006466 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3346.793337 B = 4329.424375 C = 6531.477390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.081 3.919 3 Si 0.878 3.122 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.052 0.948 9 C 0.223 3.777 10 N -0.575 5.575 11 C 0.078 3.922 12 C 0.432 3.568 13 F -0.177 7.177 14 F -0.189 7.189 15 F -0.182 7.182 16 C 0.570 3.430 17 O -0.530 6.530 18 C 0.110 3.890 19 N -0.358 5.358 20 C 0.165 3.835 21 Cl -0.006 7.006 22 C -0.132 4.132 23 C -0.078 4.078 24 C -0.046 4.046 25 Cl -0.022 7.022 26 H 0.260 0.740 27 H 0.035 0.965 28 H 0.087 0.913 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.151 0.849 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.135 -6.215 7.193 9.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.123 4.123 3 Si 0.706 3.294 4 H -0.208 1.208 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.551 4.551 8 H 0.070 0.930 9 C 0.105 3.895 10 N -0.305 5.305 11 C -0.049 4.049 12 C 0.376 3.624 13 F -0.158 7.158 14 F -0.171 7.171 15 F -0.163 7.163 16 C 0.357 3.643 17 O -0.407 6.407 18 C -0.030 4.030 19 N -0.071 5.071 20 C -0.001 4.001 21 Cl 0.023 6.977 22 C -0.153 4.153 23 C -0.104 4.104 24 C -0.076 4.076 25 Cl 0.007 6.993 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.104 0.896 29 H 0.143 0.857 30 H 0.139 0.861 31 H 0.169 0.831 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.071 -6.252 6.365 9.159 hybrid contribution 0.477 0.799 0.645 1.132 sum 2.547 -5.453 7.011 9.240 Atomic orbital electron populations 1.69905 1.05499 1.26493 1.49033 1.24648 0.94584 0.98014 0.95062 0.86828 0.80105 0.84410 0.78086 1.20820 1.21106 1.20194 1.21140 0.92714 0.90202 1.51013 0.93021 1.20385 0.87371 0.81214 1.00496 1.48183 1.44864 1.34170 1.03267 1.22487 0.96921 0.94419 0.91067 1.21499 0.83440 0.83526 0.73928 1.93210 1.43351 1.83643 1.95645 1.93144 1.92283 1.84136 1.47516 1.93187 1.96689 1.67423 1.59037 1.17697 0.81578 0.81881 0.83159 1.90811 1.32516 1.30948 1.86459 1.20889 0.95738 0.93290 0.93045 1.68421 1.07043 1.04533 1.27101 1.22062 0.95396 0.93023 0.89620 1.98441 1.61201 1.39540 1.98533 1.22057 0.98088 0.96972 0.98211 1.21367 0.96686 0.94903 0.97474 1.22016 0.97266 0.93737 0.94589 1.98403 1.61885 1.40305 1.98679 0.92968 0.94690 0.89616 0.85702 0.86096 0.83144 0.82838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.54 13.29 55.43 0.74 -21.80 16 2 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 3 Si 0.88 20.29 29.54 -169.99 -5.02 15.26 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -12.68 8.01 -34.44 -0.28 -12.96 16 8 H 0.05 1.33 7.81 -52.49 -0.41 0.92 16 9 C 0.22 5.14 4.47 -5.19 -0.02 5.11 16 10 N -0.58 -11.69 2.40 -176.09 -0.42 -12.11 16 11 C 0.08 1.32 5.49 -4.04 -0.02 1.30 16 12 C 0.43 7.32 3.29 37.16 0.12 7.44 16 13 F -0.18 -3.28 15.90 2.25 0.04 -3.24 16 14 F -0.19 -2.93 17.32 2.25 0.04 -2.89 16 15 F -0.18 -3.31 16.99 2.25 0.04 -3.28 16 16 C 0.57 11.61 7.31 -12.22 -0.09 11.52 16 17 O -0.53 -10.84 13.47 5.34 0.07 -10.76 16 18 C 0.11 2.12 6.63 -82.98 -0.55 1.57 16 19 N -0.36 -7.24 4.97 -6.91 -0.03 -7.27 16 20 C 0.17 2.88 7.27 -17.45 -0.13 2.75 16 21 Cl -0.01 -0.11 29.10 -51.86 -1.51 -1.61 16 22 C -0.13 -1.72 9.88 -39.29 -0.39 -2.11 16 23 C -0.08 -0.98 9.98 -39.28 -0.39 -1.37 16 24 C -0.05 -0.73 6.37 -38.94 -0.25 -0.98 16 25 Cl -0.02 -0.34 26.05 -51.86 -1.35 -1.69 16 26 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 27 H 0.04 0.86 6.99 -51.93 -0.36 0.49 16 28 H 0.09 2.10 5.20 -52.86 -0.27 1.82 16 29 H 0.12 1.95 8.11 -51.93 -0.42 1.53 16 30 H 0.12 1.90 7.24 -51.93 -0.38 1.53 16 31 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 324.27 15.07 4.89 4.89 Total: -1.00 -27.77 324.27 -6.44 -34.22 By element: Atomic # 1 Polarization: -2.11 SS G_CDS: -1.82 Total: -3.93 kcal Atomic # 6 Polarization: 16.31 SS G_CDS: -2.09 Total: 14.22 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.28 Total: -41.18 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.07 Total: -10.76 kcal Atomic # 9 Polarization: -9.52 SS G_CDS: 0.11 Total: -9.41 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -2.86 Total: -3.30 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.77 -6.44 -34.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076092218.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.228 kcal (2) G-P(sol) polarization free energy of solvation -27.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds