Wall clock time and date at job start Tue Mar 31 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31381 * 1 3 3 Si 1.86798 * 119.99991 * 2 1 4 4 H 1.48501 * 109.47393 * 269.99728 * 3 2 1 5 5 H 1.48500 * 109.47468 * 30.00147 * 3 2 1 6 6 H 1.48504 * 109.47136 * 150.00060 * 3 2 1 7 7 C 1.39027 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00619 * 180.02562 * 7 2 1 9 9 N 1.36884 * 119.99668 * 0.02562 * 7 2 1 10 10 C 1.34783 * 119.99774 * 180.02562 * 9 7 2 11 11 O 1.21653 * 119.99883 * 359.97438 * 10 9 7 12 12 C 1.47263 * 119.99881 * 180.02562 * 10 9 7 13 13 N 1.31639 * 126.82737 * 359.68464 * 12 10 9 14 14 N 1.28390 * 111.95082 * 180.26409 * 13 12 10 15 15 H 0.97002 * 124.36226 * 179.97438 * 14 13 12 16 16 C 1.37070 * 111.26600 * 359.97438 * 14 13 12 17 17 C 1.39121 * 134.70403 * 179.97438 * 16 14 13 18 18 C 1.36688 * 119.79039 * 180.02562 * 17 16 14 19 19 C 1.38943 * 120.88790 * 359.97438 * 18 17 16 20 20 I 2.09496 * 119.74800 * 179.97438 * 19 18 17 21 21 C 1.36783 * 120.50384 * 0.02867 * 19 18 17 22 22 C 1.39168 * 119.50906 * 359.97438 * 21 19 18 23 23 H 0.97001 * 119.99549 * 359.97438 * 1 2 3 24 24 H 0.96990 * 120.00287 * 359.97438 * 9 7 2 25 25 H 1.07993 * 120.11019 * 0.03719 * 17 16 14 26 26 H 1.07999 * 119.55537 * 180.02562 * 18 17 16 27 27 H 1.07997 * 120.24238 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6177 0.0000 4 1 2.4954 2.0464 -1.4001 5 1 1.4453 2.6527 0.7001 6 1 3.5454 1.4401 0.7000 7 6 2.0090 -1.2040 0.0005 8 1 3.0890 -1.2041 0.0010 9 7 1.3245 -2.3894 0.0005 10 6 1.9984 -3.5567 0.0016 11 8 3.2149 -3.5567 0.0021 12 6 1.2620 -4.8320 0.0010 13 7 -0.0450 -4.9884 0.0053 14 7 -0.3800 -6.2279 0.0089 15 1 -1.2959 -6.5475 0.0127 16 6 0.7234 -7.0411 0.0066 17 6 0.9245 -8.4177 0.0090 18 6 2.1965 -8.9181 0.0059 19 6 3.2968 -8.0697 -0.0002 20 53 5.2306 -8.8754 -0.0039 21 6 3.1270 -6.7125 -0.0026 22 6 1.8401 -6.1826 0.0006 23 1 -0.4849 0.8401 0.0004 24 1 0.3546 -2.3894 0.0005 25 1 0.0785 -9.0888 0.0131 26 1 2.3483 -9.9874 0.0074 27 1 3.9852 -6.0569 -0.0069 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079860685.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:57 Heat of formation + Delta-G solvation = 61.534282 kcal Electronic energy + Delta-G solvation = -16551.244668 eV Core-core repulsion = 13555.508172 eV Total energy + Delta-G solvation = -2995.736496 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 356.972 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.17924 -38.03822 -37.80580 -34.08956 -32.44935 -31.43035 -31.34645 -29.72867 -27.64163 -25.49202 -23.28594 -22.64828 -21.80162 -19.22422 -18.21833 -17.75038 -16.85744 -15.58417 -15.44621 -15.19081 -14.73491 -14.06129 -13.96420 -13.75407 -13.27303 -12.74215 -12.46308 -11.73648 -11.62635 -11.17779 -11.03578 -10.64916 -10.46152 -10.30311 -10.27426 -9.83863 -9.83348 -9.58589 -8.70503 -8.65385 -8.13371 -7.93255 -6.58352 -3.91838 0.94597 1.19743 1.25311 2.33275 2.93800 3.16250 3.21018 3.27101 3.60730 4.03904 4.29623 4.44676 4.57278 4.84476 5.00589 5.25312 5.30152 5.37397 5.45051 5.91907 6.10017 6.13153 6.26947 6.61127 6.68119 7.18848 7.40213 7.90074 8.13510 8.48874 9.01269 9.39623 9.92673 10.57616 Molecular weight = 356.97amu Principal moments of inertia in cm(-1) A = 0.020222 B = 0.003165 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.325988 B = 8843.879775 C =10218.360452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.026 3.974 3 Si 0.937 3.063 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.295 4.295 8 H 0.111 0.889 9 N -0.525 5.525 10 C 0.499 3.501 11 O -0.588 6.588 12 C 0.061 3.939 13 N -0.235 5.235 14 N -0.427 5.427 15 H 0.443 0.557 16 C 0.080 3.920 17 C -0.123 4.123 18 C -0.058 4.058 19 C -0.136 4.136 20 I -0.049 7.049 21 C 0.011 3.989 22 C -0.117 4.117 23 H 0.277 0.723 24 H 0.401 0.599 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.243 -20.975 0.015 21.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.179 4.179 3 Si 0.763 3.237 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.426 4.426 8 H 0.129 0.871 9 N -0.159 5.159 10 C 0.284 3.716 11 O -0.473 6.473 12 C -0.111 4.111 13 N -0.062 5.062 14 N -0.143 5.143 15 H 0.287 0.713 16 C -0.036 4.036 17 C -0.146 4.146 18 C -0.081 4.081 19 C -0.278 4.278 20 I 0.101 6.899 21 C -0.011 4.011 22 C -0.127 4.127 23 H 0.087 0.913 24 H 0.236 0.764 25 H 0.149 0.851 26 H 0.150 0.850 27 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.226 -20.733 0.020 21.159 hybrid contribution -1.364 0.614 -0.008 1.496 sum 2.863 -20.119 0.011 20.322 Atomic orbital electron populations 1.69633 1.06197 1.28848 1.47394 1.25445 0.95701 1.00232 0.96527 0.85754 0.79331 0.80007 0.78657 1.20072 1.20690 1.19014 1.19887 0.93834 0.81892 1.46958 0.87118 1.41833 1.09970 1.04294 1.59766 1.16218 0.86556 0.81062 0.87724 1.90634 1.12236 1.85917 1.58540 1.23547 0.87949 0.94649 1.04982 1.73153 1.16584 1.00057 1.16399 1.43057 1.08186 1.01710 1.61327 0.71296 1.19316 0.88030 0.93560 1.02652 1.19656 0.97528 0.90518 1.06870 1.20475 0.90597 0.99319 0.97691 1.23627 0.95206 0.95374 1.13580 1.96719 1.10908 1.83357 1.98929 1.20371 0.96643 0.93040 0.91097 1.19457 0.93203 0.91846 1.08179 0.91333 0.76438 0.85054 0.85019 0.83574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.53 13.05 55.50 0.72 -22.81 15 2 C 0.03 0.67 5.50 -17.45 -0.10 0.57 15 3 Si 0.94 20.34 29.55 -169.99 -5.02 15.32 15 4 H -0.27 -5.90 7.11 56.52 0.40 -5.49 15 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 15 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 7 C -0.29 -8.12 9.68 -15.00 -0.15 -8.26 15 8 H 0.11 3.13 7.15 -52.48 -0.38 2.75 15 9 N -0.52 -13.78 5.28 -12.00 -0.06 -13.84 15 10 C 0.50 12.59 7.76 -12.59 -0.10 12.50 15 11 O -0.59 -16.15 15.97 5.23 0.08 -16.06 15 12 C 0.06 1.29 7.32 -80.77 -0.59 0.70 15 13 N -0.23 -4.39 11.80 34.45 0.41 -3.98 15 14 N -0.43 -6.06 6.85 32.34 0.22 -5.84 15 15 H 0.44 4.29 8.96 -190.48 -1.71 2.58 15 16 C 0.08 1.17 7.38 -84.21 -0.62 0.55 15 17 C -0.12 -1.38 10.03 -39.81 -0.40 -1.78 15 18 C -0.06 -0.66 9.66 -39.88 -0.39 -1.04 15 19 C -0.14 -1.85 6.17 -39.85 -0.25 -2.10 15 20 I -0.05 -0.57 40.24 -73.02 -2.94 -3.51 15 21 C 0.01 0.19 9.55 -39.76 -0.38 -0.19 15 22 C -0.12 -2.14 6.34 -105.05 -0.67 -2.81 15 23 H 0.28 6.90 8.31 -40.82 -0.34 6.56 15 24 H 0.40 10.33 7.63 -40.82 -0.31 10.02 15 25 H 0.13 1.00 8.06 -52.49 -0.42 0.58 15 26 H 0.13 1.15 8.06 -52.49 -0.42 0.73 15 27 H 0.15 2.68 7.65 -52.49 -0.40 2.28 15 LS Contribution 279.26 15.07 4.21 4.21 Total: -1.00 -30.49 279.26 -8.78 -39.28 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -2.78 Total: 9.09 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -3.63 Total: -1.86 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 1.29 Total: -46.47 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.08 Total: -16.06 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 53 Polarization: -0.57 SS G_CDS: -2.94 Total: -3.51 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.49 -8.78 -39.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079860685.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.811 kcal (2) G-P(sol) polarization free energy of solvation -30.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds