Wall clock time and date at job start Tue Mar 31 2020 05:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35973 * 116.99642 * 2 1 4 4 C 1.38734 * 119.98672 * 0.02608 * 3 2 1 5 5 C 1.38100 * 120.03063 * 179.74877 * 4 3 2 6 6 C 1.38815 * 119.99421 * 0.50498 * 5 4 3 7 7 N 1.40192 * 120.01806 * 179.74798 * 6 5 4 8 8 C 1.34777 * 120.00006 * 24.81196 * 7 6 5 9 9 O 1.21597 * 120.00036 * 5.66723 * 8 7 6 10 10 N 1.34779 * 120.00169 * 185.67521 * 8 7 6 11 11 C 1.46500 * 119.99925 * 359.97438 * 10 8 7 12 12 C 1.46499 * 119.99783 * 179.97438 * 10 8 7 13 13 H 1.08997 * 109.47419 * 0.02562 * 12 10 8 14 14 C 1.52997 * 109.47035 * 239.99669 * 12 10 8 15 15 C 1.50707 * 109.46537 * 120.00108 * 12 10 8 16 16 H 1.07998 * 119.99987 * 34.96702 * 15 12 10 17 17 C 1.37880 * 119.99734 * 214.95878 * 15 12 10 18 18 N 1.31512 * 119.99872 * 184.93544 * 17 15 12 19 19 Si 1.86805 * 119.99772 * 4.94414 * 17 15 12 20 20 H 1.48499 * 109.47405 * 94.92288 * 19 17 15 21 21 H 1.48497 * 109.46518 * 214.91862 * 19 17 15 22 22 H 1.48496 * 109.47075 * 334.91890 * 19 17 15 23 23 C 1.38894 * 119.96856 * 359.47317 * 6 5 4 24 24 Br 1.89095 * 120.01783 * 180.29946 * 23 6 5 25 25 C 1.38191 * 119.96770 * 0.27471 * 23 6 5 26 26 H 1.08992 * 109.47571 * 59.99711 * 1 2 3 27 27 H 1.09008 * 109.46905 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46747 * 299.99362 * 1 2 3 29 29 H 1.08003 * 119.98335 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.99890 * 180.25555 * 5 4 3 31 31 H 0.97003 * 120.00071 * 204.81314 * 7 6 5 32 32 H 1.08999 * 109.46718 * 270.00527 * 11 10 8 33 33 H 1.09005 * 109.47326 * 30.00094 * 11 10 8 34 34 H 1.08995 * 109.47007 * 149.99751 * 11 10 8 35 35 H 1.08996 * 109.47578 * 294.97769 * 14 12 10 36 36 H 1.09001 * 109.47378 * 54.97820 * 14 12 10 37 37 H 1.09006 * 109.47020 * 174.97526 * 14 12 10 38 38 H 0.97005 * 119.99827 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.00317 * 179.97438 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2903 2.3749 0.0005 5 6 1.9163 3.6059 0.0058 6 6 3.3025 3.6796 -0.0001 7 7 3.9384 4.9289 -0.0001 8 6 3.3020 6.0090 0.4949 9 8 2.2197 5.8827 1.0345 10 7 3.8651 7.2291 0.3915 11 6 5.1693 7.3813 -0.2583 12 6 3.1731 8.4032 0.9291 13 1 2.2256 8.0955 1.3714 14 6 2.9092 9.4010 -0.2003 15 6 4.0316 9.0532 1.9834 16 1 5.1064 9.0582 1.8770 17 6 3.4450 9.6417 3.0837 18 7 4.1852 10.2930 3.9540 19 14 1.5988 9.5135 3.3382 20 1 1.3009 8.3666 4.2333 21 1 1.0962 10.7669 3.9558 22 1 0.9318 9.3051 2.0280 23 6 4.0592 2.5148 -0.0002 24 35 5.9475 2.6136 0.0004 25 6 3.4314 1.2838 -0.0001 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.2118 2.3177 0.0006 30 1 1.3273 4.5111 0.0104 31 1 4.8364 5.0161 -0.3564 32 1 5.9597 7.2800 0.4854 33 1 5.2872 6.6116 -1.0210 34 1 5.2311 8.3654 -0.7227 35 1 3.8583 9.7763 -0.5828 36 1 2.3644 8.9050 -1.0036 37 1 2.3166 10.2328 0.1809 38 1 3.7725 10.7067 4.7283 39 1 4.0192 0.3778 -0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086285421.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:18 Heat of formation + Delta-G solvation = -18.604638 kcal Electronic energy + Delta-G solvation = -23662.969387 eV Core-core repulsion = 20039.300373 eV Total energy + Delta-G solvation = -3623.669013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 356.052 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.69496 -39.66019 -37.66655 -35.61150 -34.33019 -32.61460 -32.30302 -30.59032 -29.88536 -28.43027 -27.17896 -26.30347 -25.26833 -23.36904 -22.16133 -21.00192 -19.22695 -18.30271 -17.93998 -17.28508 -16.68723 -16.08495 -15.88166 -15.37601 -15.00139 -14.49146 -14.13418 -14.09552 -13.65180 -13.39204 -13.24787 -12.91278 -12.69949 -12.49617 -12.37126 -12.15019 -11.84633 -11.72033 -11.46166 -11.19923 -11.07276 -10.79689 -10.73573 -10.48334 -10.42900 -9.94685 -9.77908 -9.47132 -9.23861 -8.89920 -8.62639 -7.91621 -7.52926 -6.19577 -4.21897 0.97407 1.31738 1.45286 2.93585 3.19157 3.29667 3.37048 3.38104 3.43374 3.83968 4.27882 4.36027 4.69201 4.84806 4.86306 4.95908 5.09501 5.20061 5.25675 5.33888 5.46418 5.60963 5.77404 5.88297 6.05677 6.15346 6.21403 6.28237 6.33867 6.36892 6.52651 6.80448 6.81781 6.89096 7.23395 7.30329 7.48763 7.59152 8.24467 8.47255 8.82710 8.99157 9.42744 10.92287 Molecular weight = 356.05amu Principal moments of inertia in cm(-1) A = 0.012440 B = 0.003714 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.258764 B = 7536.933320 C = 8979.538273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.099 3.901 4 C -0.166 4.166 5 C -0.088 4.088 6 C 0.182 3.818 7 N -0.687 5.687 8 C 0.698 3.302 9 O -0.582 6.582 10 N -0.596 5.596 11 C 0.082 3.918 12 C 0.233 3.767 13 H 0.070 0.930 14 C -0.147 4.147 15 C -0.526 4.526 16 H 0.078 0.922 17 C 0.080 3.920 18 N -0.890 5.890 19 Si 0.874 3.126 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.259 1.259 23 C -0.100 4.100 24 Br -0.042 7.042 25 C -0.102 4.102 26 H 0.055 0.945 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.135 0.865 30 H 0.163 0.837 31 H 0.407 0.593 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.027 0.973 37 H 0.057 0.943 38 H 0.266 0.734 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.096 -18.561 -12.084 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.053 3.947 4 C -0.186 4.186 5 C -0.110 4.110 6 C 0.082 3.918 7 N -0.336 5.336 8 C 0.401 3.599 9 O -0.461 6.461 10 N -0.330 5.330 11 C -0.062 4.062 12 C 0.133 3.867 13 H 0.088 0.912 14 C -0.206 4.206 15 C -0.564 4.564 16 H 0.096 0.904 17 C -0.124 4.124 18 N -0.526 5.526 19 Si 0.701 3.299 20 H -0.199 1.199 21 H -0.213 1.213 22 H -0.184 1.184 23 C -0.183 4.183 24 Br 0.044 6.956 25 C -0.123 4.123 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.075 0.925 29 H 0.153 0.847 30 H 0.180 0.820 31 H 0.246 0.754 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.048 -18.504 -11.515 21.820 hybrid contribution -0.898 0.176 0.186 0.934 sum -1.946 -18.329 -11.329 21.635 Atomic orbital electron populations 1.23055 0.78398 1.03807 1.01528 1.86047 1.21288 1.26509 1.89304 1.18736 0.91645 0.84401 0.99946 1.21313 1.00401 0.91605 1.05260 1.21387 0.92427 0.99170 0.97994 1.17224 0.91673 0.83447 0.99473 1.43138 1.19900 1.05810 1.64719 1.15980 0.84172 0.80508 0.79267 1.90808 1.21706 1.84342 1.49233 1.47767 1.20329 1.05749 1.59130 1.21579 0.86007 1.02146 0.96424 1.19402 0.94631 0.80582 0.92095 0.91186 1.22221 1.00359 0.99755 0.98228 1.21137 0.95175 1.35676 1.04409 0.90406 1.24965 0.98176 0.94158 0.95130 1.69893 1.35968 1.34135 1.12653 0.86871 0.85978 0.77662 0.79367 1.19921 1.21260 1.18371 1.21138 0.90114 0.94118 1.12903 1.96685 1.02399 1.98729 1.97824 1.19940 0.91649 0.96329 1.04334 0.92626 0.88325 0.92526 0.84722 0.81978 0.75446 0.92514 0.93435 0.90297 0.93094 0.95405 0.92440 0.92370 0.84138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.54 10.50 -19.65 -0.21 -3.74 16 3 C 0.10 1.24 6.69 -39.23 -0.26 0.98 16 4 C -0.17 -2.11 9.03 -39.45 -0.36 -2.47 16 5 C -0.09 -1.37 8.71 -39.42 -0.34 -1.71 16 6 C 0.18 2.84 6.43 -83.58 -0.54 2.30 16 7 N -0.69 -11.30 5.00 -14.17 -0.07 -11.38 16 8 C 0.70 14.22 8.09 -86.92 -0.70 13.52 16 9 O -0.58 -13.56 12.84 5.28 0.07 -13.49 16 10 N -0.60 -12.16 2.75 -181.00 -0.50 -12.66 16 11 C 0.08 1.32 9.25 59.85 0.55 1.87 16 12 C 0.23 5.47 2.27 -69.08 -0.16 5.32 16 13 H 0.07 1.80 3.81 -51.93 -0.20 1.61 16 14 C -0.15 -2.98 9.05 37.16 0.34 -2.64 16 15 C -0.53 -14.21 8.82 -34.44 -0.30 -14.52 16 16 H 0.08 2.23 7.66 -52.49 -0.40 1.83 16 17 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 18 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 19 Si 0.87 21.83 27.31 -169.99 -4.64 17.18 16 20 H -0.27 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.26 -6.22 6.36 56.52 0.36 -5.86 16 23 C -0.10 -1.37 6.24 -39.36 -0.25 -1.61 16 24 Br -0.04 -0.50 32.30 -68.01 -2.20 -2.70 16 25 C -0.10 -1.28 9.72 -39.43 -0.38 -1.66 16 26 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 27 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.06 0.40 7.66 -51.92 -0.40 0.00 16 29 H 0.14 1.37 6.29 -52.48 -0.33 1.04 16 30 H 0.16 2.80 5.79 -52.49 -0.30 2.49 16 31 H 0.41 5.80 5.34 -40.82 -0.22 5.58 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.60 6.45 -51.93 -0.34 0.26 16 34 H 0.08 1.21 6.53 -51.93 -0.34 0.88 16 35 H 0.05 0.96 6.88 -51.93 -0.36 0.60 16 36 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 337.82 15.07 5.09 5.09 Total: -1.00 -32.08 337.82 -7.76 -39.84 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -4.57 Total: 4.85 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -1.51 Total: 2.73 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.20 Total: -49.77 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.14 Total: -17.24 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.64 Total: 17.18 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.20 Total: -2.70 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.08 -7.76 -39.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086285421.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.237 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds