Wall clock time and date at job start Tue Mar 31 2020 05:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35973 * 116.99642 * 2 1 4 4 C 1.38734 * 119.98672 * 0.02608 * 3 2 1 5 5 C 1.38100 * 120.03063 * 179.74877 * 4 3 2 6 6 C 1.38815 * 119.99421 * 0.50498 * 5 4 3 7 7 N 1.40192 * 120.01806 * 179.74798 * 6 5 4 8 8 C 1.34777 * 120.00006 * 24.81196 * 7 6 5 9 9 O 1.21597 * 120.00036 * 5.66723 * 8 7 6 10 10 N 1.34779 * 120.00169 * 185.67521 * 8 7 6 11 11 C 1.46500 * 119.99925 * 359.97438 * 10 8 7 12 12 C 1.46499 * 119.99783 * 179.97438 * 10 8 7 13 13 H 1.08997 * 109.47419 * 0.02562 * 12 10 8 14 14 C 1.52997 * 109.47035 * 239.99669 * 12 10 8 15 15 C 1.50707 * 109.46537 * 120.00108 * 12 10 8 16 16 H 1.07998 * 119.99987 * 34.96702 * 15 12 10 17 17 C 1.37880 * 119.99734 * 214.95878 * 15 12 10 18 18 N 1.31512 * 119.99872 * 184.93544 * 17 15 12 19 19 Si 1.86805 * 119.99772 * 4.94414 * 17 15 12 20 20 H 1.48499 * 109.47405 * 94.92288 * 19 17 15 21 21 H 1.48497 * 109.46518 * 214.91862 * 19 17 15 22 22 H 1.48496 * 109.47075 * 334.91890 * 19 17 15 23 23 C 1.38894 * 119.96856 * 359.47317 * 6 5 4 24 24 Br 1.89095 * 120.01783 * 180.29946 * 23 6 5 25 25 C 1.38191 * 119.96770 * 0.27471 * 23 6 5 26 26 H 1.08992 * 109.47571 * 59.99711 * 1 2 3 27 27 H 1.09008 * 109.46905 * 180.02562 * 1 2 3 28 28 H 1.09009 * 109.46747 * 299.99362 * 1 2 3 29 29 H 1.08003 * 119.98335 * 359.97438 * 4 3 2 30 30 H 1.08001 * 119.99890 * 180.25555 * 5 4 3 31 31 H 0.97003 * 120.00071 * 204.81314 * 7 6 5 32 32 H 1.08999 * 109.46718 * 270.00527 * 11 10 8 33 33 H 1.09005 * 109.47326 * 30.00094 * 11 10 8 34 34 H 1.08995 * 109.47007 * 149.99751 * 11 10 8 35 35 H 1.08996 * 109.47578 * 294.97769 * 14 12 10 36 36 H 1.09001 * 109.47378 * 54.97820 * 14 12 10 37 37 H 1.09006 * 109.47020 * 174.97526 * 14 12 10 38 38 H 0.97005 * 119.99827 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.00317 * 179.97438 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2903 2.3749 0.0005 5 6 1.9163 3.6059 0.0058 6 6 3.3025 3.6796 -0.0001 7 7 3.9384 4.9289 -0.0001 8 6 3.3020 6.0090 0.4949 9 8 2.2197 5.8827 1.0345 10 7 3.8651 7.2291 0.3915 11 6 5.1693 7.3813 -0.2583 12 6 3.1731 8.4032 0.9291 13 1 2.2256 8.0955 1.3714 14 6 2.9092 9.4010 -0.2003 15 6 4.0316 9.0532 1.9834 16 1 5.1064 9.0582 1.8770 17 6 3.4450 9.6417 3.0837 18 7 4.1852 10.2930 3.9540 19 14 1.5988 9.5135 3.3382 20 1 1.3009 8.3666 4.2333 21 1 1.0962 10.7669 3.9558 22 1 0.9318 9.3051 2.0280 23 6 4.0592 2.5148 -0.0002 24 35 5.9475 2.6136 0.0004 25 6 3.4314 1.2838 -0.0001 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.2118 2.3177 0.0006 30 1 1.3273 4.5111 0.0104 31 1 4.8364 5.0161 -0.3564 32 1 5.9597 7.2800 0.4854 33 1 5.2872 6.6116 -1.0210 34 1 5.2311 8.3654 -0.7227 35 1 3.8583 9.7763 -0.5828 36 1 2.3644 8.9050 -1.0036 37 1 2.3166 10.2328 0.1809 38 1 3.7725 10.7067 4.7283 39 1 4.0192 0.3778 -0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086285421.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:17 Heat of formation + Delta-G solvation = -38.828949 kcal Electronic energy + Delta-G solvation = -23663.846379 eV Core-core repulsion = 20039.300373 eV Total energy + Delta-G solvation = -3624.546005 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 356.052 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.96488 -40.81141 -38.79627 -37.21575 -35.71445 -34.56762 -33.34566 -32.19664 -30.98997 -29.49696 -28.03727 -27.66365 -27.22193 -24.59234 -23.34655 -22.39832 -20.76852 -19.63938 -19.14877 -18.86874 -18.22389 -17.24659 -17.04066 -16.65971 -16.42133 -15.99387 -15.52146 -15.09436 -14.95863 -14.67806 -14.59818 -14.41887 -14.17182 -13.97456 -13.87237 -13.32653 -13.06927 -12.96756 -12.90237 -12.55471 -12.53954 -12.33559 -12.11995 -11.85431 -11.78142 -11.42730 -11.27806 -11.13893 -10.88281 -10.76550 -9.93824 -9.47936 -8.71967 -8.36205 -6.40236 -0.07069 0.22923 0.41837 1.27695 1.35499 1.44084 1.56282 2.02052 2.28907 2.37059 2.60517 2.83659 3.11900 3.67705 3.88703 3.99215 4.20766 4.24681 4.42356 4.43050 4.43756 4.53254 4.60916 4.74224 4.76606 4.77465 4.83167 4.92439 4.98593 5.12376 5.19908 5.25582 5.32196 5.54530 5.62674 5.74979 5.86060 6.28683 6.34375 6.65528 6.89946 7.25390 7.46210 8.79223 Molecular weight = 356.05amu Principal moments of inertia in cm(-1) A = 0.012440 B = 0.003714 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.258764 B = 7536.933320 C = 8979.538273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.325 6.325 3 C 0.107 3.893 4 C -0.163 4.163 5 C -0.104 4.104 6 C 0.152 3.848 7 N -0.673 5.673 8 C 0.695 3.305 9 O -0.617 6.617 10 N -0.605 5.605 11 C 0.079 3.921 12 C 0.235 3.765 13 H 0.048 0.952 14 C -0.139 4.139 15 C -0.520 4.520 16 H 0.052 0.948 17 C 0.028 3.972 18 N -0.934 5.934 19 Si 0.926 3.074 20 H -0.287 1.287 21 H -0.276 1.276 22 H -0.245 1.245 23 C -0.099 4.099 24 Br -0.026 7.026 25 C -0.103 4.103 26 H 0.067 0.933 27 H 0.124 0.876 28 H 0.060 0.940 29 H 0.158 0.842 30 H 0.141 0.859 31 H 0.416 0.584 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.268 0.732 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.792 -20.549 -13.703 24.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.060 3.940 4 C -0.182 4.182 5 C -0.126 4.126 6 C 0.054 3.946 7 N -0.323 5.323 8 C 0.397 3.603 9 O -0.498 6.498 10 N -0.339 5.339 11 C -0.064 4.064 12 C 0.133 3.867 13 H 0.066 0.934 14 C -0.198 4.198 15 C -0.559 4.559 16 H 0.070 0.930 17 C -0.171 4.171 18 N -0.574 5.574 19 Si 0.752 3.248 20 H -0.214 1.214 21 H -0.201 1.201 22 H -0.168 1.168 23 C -0.181 4.181 24 Br 0.059 6.941 25 C -0.123 4.123 26 H 0.085 0.915 27 H 0.142 0.858 28 H 0.079 0.921 29 H 0.176 0.824 30 H 0.158 0.842 31 H 0.256 0.744 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.721 -20.533 -13.181 24.460 hybrid contribution -0.643 0.586 0.636 1.078 sum -2.365 -19.947 -12.545 23.682 Atomic orbital electron populations 1.23393 0.76324 1.05832 1.02289 1.86059 1.23416 1.25544 1.88822 1.18834 0.91792 0.84871 0.98484 1.21485 1.01660 0.90718 1.04348 1.21276 0.92497 0.99420 0.99357 1.17390 0.92068 0.83419 1.01745 1.42834 1.19992 1.05284 1.64229 1.16079 0.83941 0.81117 0.79149 1.90784 1.23313 1.84993 1.50742 1.47572 1.21681 1.05159 1.59463 1.21788 0.83645 1.04045 0.96904 1.19183 0.93055 0.81936 0.92528 0.93403 1.22082 1.01374 0.98777 0.97567 1.21385 0.94468 1.34852 1.05156 0.92973 1.25643 1.01850 0.94348 0.95286 1.69998 1.37636 1.36075 1.13667 0.86045 0.81896 0.77319 0.79589 1.21370 1.20110 1.16847 1.21223 0.90976 0.93805 1.12139 1.96696 1.00934 1.98722 1.97769 1.20216 0.92112 0.96539 1.03467 0.91462 0.85819 0.92131 0.82430 0.84190 0.74358 0.93219 0.89675 0.89539 0.91778 0.93223 0.92825 0.92299 0.82275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.32 -6.32 10.50 -93.24 -0.98 -7.30 16 3 C 0.11 2.44 6.69 22.50 0.15 2.59 16 4 C -0.16 -3.89 9.03 22.36 0.20 -3.69 16 5 C -0.10 -3.18 8.71 22.37 0.19 -2.98 16 6 C 0.15 4.65 6.43 38.10 0.24 4.89 16 7 N -0.67 -21.68 5.00 -316.99 -1.58 -23.26 16 8 C 0.70 28.20 8.09 179.05 1.45 29.64 16 9 O -0.62 -29.12 12.84 -4.02 -0.05 -29.18 16 10 N -0.61 -24.38 2.75 -844.83 -2.33 -26.70 16 11 C 0.08 2.42 9.25 127.77 1.18 3.60 16 12 C 0.24 10.96 2.27 44.25 0.10 11.06 16 13 H 0.05 2.46 3.81 -2.39 -0.01 2.45 16 14 C -0.14 -5.43 9.05 71.98 0.65 -4.78 16 15 C -0.52 -28.51 8.82 25.60 0.23 -28.28 16 16 H 0.05 3.07 7.66 -2.91 -0.02 3.05 16 17 C 0.03 1.63 5.47 84.66 0.46 2.09 16 18 N -0.93 -57.01 13.96 21.45 0.30 -56.71 16 19 Si 0.93 45.63 27.31 68.60 1.87 47.50 16 20 H -0.29 -14.67 7.11 99.48 0.71 -13.97 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.24 -11.37 6.36 99.48 0.63 -10.74 16 23 C -0.10 -2.55 6.24 22.42 0.14 -2.41 16 24 Br -0.03 -0.59 32.30 -20.37 -0.66 -1.25 16 25 C -0.10 -2.36 9.72 22.37 0.22 -2.14 16 26 H 0.07 0.65 7.66 -2.39 -0.02 0.64 16 27 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.06 0.68 7.66 -2.38 -0.02 0.67 16 29 H 0.16 2.89 6.29 -2.91 -0.02 2.87 16 30 H 0.14 4.93 5.79 -2.91 -0.02 4.92 16 31 H 0.42 11.29 5.34 -92.71 -0.50 10.80 16 32 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.08 1.94 6.45 -2.38 -0.02 1.93 16 34 H 0.09 2.52 6.53 -2.39 -0.02 2.50 16 35 H 0.06 2.30 6.88 -2.39 -0.02 2.28 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 39 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -70.51 337.82 3.44 -67.08 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.53 Total: 18.93 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 6.33 Total: 10.88 kcal Atomic # 7 Polarization: -103.06 SS G_CDS: -3.61 Total: -106.67 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -1.03 Total: -36.47 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.87 Total: 47.50 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -0.66 Total: -1.25 kcal Total: -70.51 3.44 -67.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086285421.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.247 kcal (2) G-P(sol) polarization free energy of solvation -70.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds