Wall clock time and date at job start Tue Mar 31 2020 04:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38161 * 120.02965 * 2 1 4 4 C 1.38249 * 120.05704 * 180.27317 * 3 2 1 5 5 C 1.38294 * 120.11695 * 359.69910 * 4 3 2 6 6 C 1.38109 * 120.05722 * 0.02562 * 5 4 3 7 7 C 1.38733 * 120.02913 * 179.71828 * 2 1 3 8 8 O 1.35883 * 120.05976 * 0.03068 * 7 2 1 9 9 C 1.35742 * 117.99702 * 274.60420 * 8 7 2 10 10 N 1.32176 * 119.72713 * 5.31037 * 9 8 7 11 11 C 1.31990 * 121.71208 * 180.31526 * 10 9 8 12 12 C 1.38083 * 120.97591 * 359.65321 * 11 10 9 13 13 C 1.38740 * 119.34963 * 0.02572 * 12 11 10 14 14 C 1.38961 * 118.42349 * 359.97438 * 13 12 11 15 15 N 1.40157 * 120.50208 * 180.02562 * 14 13 12 16 16 C 1.34774 * 119.99834 * 335.53243 * 15 14 13 17 17 O 1.21588 * 120.00553 * 354.27800 * 16 15 14 18 18 N 1.34783 * 119.99493 * 174.27722 * 16 15 14 19 19 C 1.46502 * 119.99750 * 359.97438 * 18 16 15 20 20 C 1.46499 * 120.00075 * 179.97438 * 18 16 15 21 21 H 1.09007 * 109.46847 * 0.02562 * 20 18 16 22 22 C 1.53001 * 109.47053 * 119.99921 * 20 18 16 23 23 C 1.50699 * 109.47288 * 240.00234 * 20 18 16 24 24 H 1.08004 * 119.99779 * 359.97438 * 23 20 18 25 25 C 1.37873 * 120.00152 * 180.02562 * 23 20 18 26 26 N 1.31523 * 119.99793 * 359.97438 * 25 23 20 27 27 Si 1.86795 * 120.00265 * 179.97438 * 25 23 20 28 28 H 1.48500 * 109.47071 * 59.99512 * 27 25 23 29 29 H 1.48493 * 109.47298 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.47002 * 299.99577 * 27 25 23 31 31 H 1.08993 * 109.47514 * 270.27639 * 1 2 3 32 32 H 1.09006 * 109.46996 * 30.28506 * 1 2 3 33 33 H 1.09005 * 109.46765 * 150.27700 * 1 2 3 34 34 H 1.07996 * 119.97119 * 359.97311 * 3 2 1 35 35 H 1.08006 * 119.93743 * 179.72425 * 4 3 2 36 36 H 1.07999 * 119.96711 * 180.02562 * 5 4 3 37 37 H 1.07993 * 120.02864 * 180.02562 * 6 5 4 38 38 H 1.08001 * 119.50764 * 179.67947 * 11 10 9 39 39 H 1.07998 * 120.32772 * 180.02562 * 12 11 10 40 40 H 1.07995 * 120.79233 * 180.02562 * 13 12 11 41 41 H 0.96998 * 119.99562 * 155.53776 * 15 14 13 42 42 H 1.08996 * 109.47211 * 269.99811 * 19 18 16 43 43 H 1.09000 * 109.47271 * 30.00391 * 19 18 16 44 44 H 1.09008 * 109.46889 * 150.00092 * 19 18 16 45 45 H 1.08994 * 109.46910 * 60.00049 * 22 20 18 46 46 H 1.09001 * 109.47179 * 180.02562 * 22 20 18 47 47 H 1.09006 * 109.47072 * 300.00043 * 22 20 18 48 48 H 0.97000 * 119.99796 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1968 -0.0057 5 6 4.2754 0.0009 -0.0051 6 6 3.5891 -1.1976 0.0006 7 6 2.2013 -1.2011 0.0059 8 8 1.5237 -2.3789 0.0111 9 6 1.1220 -2.8777 1.2079 10 7 1.3019 -2.1671 2.3078 11 6 0.9320 -2.6165 3.4924 12 6 0.3319 -3.8528 3.6279 13 6 0.1167 -4.6315 2.5000 14 6 0.5163 -4.1330 1.2659 15 7 0.3195 -4.8827 0.0982 16 6 0.2166 -6.2247 0.1684 17 8 0.3979 -6.7938 1.2274 18 7 -0.0872 -6.9358 -0.9355 19 6 -0.3062 -6.2499 -2.2114 20 6 -0.1985 -8.3946 -0.8595 21 1 -0.0041 -8.7210 0.1622 22 6 -1.6093 -8.8205 -1.2708 23 6 0.8072 -9.0242 -1.7885 24 1 1.4634 -8.4001 -2.3770 25 6 0.8889 -10.3969 -1.8879 26 7 0.0895 -11.1569 -1.1715 27 14 2.1351 -11.1774 -3.0399 28 1 3.5046 -10.7644 -2.6410 29 1 2.0223 -12.6561 -2.9628 30 1 1.8694 -10.7323 -4.4315 31 1 -0.3634 0.0050 1.0276 32 1 -0.3633 0.8875 -0.5183 33 1 -0.3633 -0.8925 -0.5096 34 1 1.6584 2.1314 -0.0004 35 1 4.1194 2.1330 -0.0102 36 1 5.3554 0.0043 -0.0092 37 1 4.1319 -2.1312 0.0014 38 1 1.1007 -2.0081 4.3686 39 1 0.0330 -4.2100 4.6022 40 1 -0.3510 -5.6017 2.5790 41 1 0.2574 -4.4357 -0.7604 42 1 -1.3607 -5.9921 -2.3090 43 1 0.2946 -5.3410 -2.2431 44 1 -0.0152 -6.9065 -3.0315 45 1 -1.8041 -8.4940 -2.2922 46 1 -1.6923 -9.9059 -1.2138 47 1 -2.3368 -8.3651 -0.5987 48 1 0.1473 -12.1226 -1.2412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095409909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:20 Heat of formation + Delta-G solvation = 21.710564 kcal Electronic energy + Delta-G solvation = -31492.583770 eV Core-core repulsion = 27321.075247 eV Total energy + Delta-G solvation = -4171.508523 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 355.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31316 -40.06503 -39.07516 -37.56354 -35.79946 -34.62385 -32.93800 -32.89083 -31.69031 -30.68377 -29.70957 -28.62730 -27.05117 -26.21740 -25.24789 -24.35981 -23.39671 -22.44837 -21.55900 -21.20576 -19.31214 -18.87487 -18.25140 -16.98968 -16.77117 -16.49037 -16.25675 -16.04767 -15.25839 -15.16995 -14.95301 -14.78679 -14.32554 -14.19342 -14.08564 -13.61230 -13.37541 -13.22936 -13.11951 -12.81915 -12.60435 -12.56509 -12.40109 -12.31453 -12.09349 -11.67915 -11.59353 -11.53198 -11.11388 -11.02005 -10.91085 -10.77409 -10.70370 -10.29604 -10.18890 -9.94376 -9.40521 -9.22146 -9.06676 -9.03396 -8.77347 -8.45369 -7.95627 -7.54462 -6.10034 -4.18048 0.93839 1.15061 1.16797 1.36211 2.88318 3.03936 3.26739 3.32034 3.34584 3.57696 3.67819 3.98552 4.28209 4.37522 4.48457 4.61544 4.62965 4.82313 4.88938 5.03800 5.06632 5.20568 5.21899 5.26342 5.39220 5.44716 5.48477 5.58590 5.59328 5.70189 5.93094 5.94917 5.99236 6.14855 6.21719 6.25906 6.26418 6.31663 6.42858 6.56699 6.66802 6.76667 6.88642 6.98024 7.09704 7.39880 7.42659 7.64485 7.76178 7.87437 8.02202 8.17200 8.54782 8.81603 9.10184 9.48635 10.95268 Molecular weight = 355.17amu Principal moments of inertia in cm(-1) A = 0.013490 B = 0.002610 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.186098 B =10727.113402 C =11638.347000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.078 4.078 3 C -0.113 4.113 4 C -0.116 4.116 5 C -0.115 4.115 6 C -0.113 4.113 7 C 0.102 3.898 8 O -0.253 6.253 9 C 0.275 3.725 10 N -0.505 5.505 11 C 0.096 3.904 12 C -0.176 4.176 13 C -0.066 4.066 14 C 0.133 3.867 15 N -0.681 5.681 16 C 0.697 3.303 17 O -0.580 6.580 18 N -0.600 5.600 19 C 0.082 3.918 20 C 0.272 3.728 21 H 0.066 0.934 22 C -0.146 4.146 23 C -0.528 4.528 24 H 0.059 0.941 25 C 0.066 3.934 26 N -0.887 5.887 27 Si 0.899 3.101 28 H -0.277 1.277 29 H -0.286 1.286 30 H -0.277 1.277 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.157 0.843 39 H 0.139 0.861 40 H 0.168 0.832 41 H 0.409 0.591 42 H 0.045 0.955 43 H 0.047 0.953 44 H 0.086 0.914 45 H 0.030 0.970 46 H 0.095 0.905 47 H 0.011 0.989 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.845 23.636 3.495 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.078 4.078 3 C -0.131 4.131 4 C -0.134 4.134 5 C -0.134 4.134 6 C -0.132 4.132 7 C 0.060 3.940 8 O -0.160 6.160 9 C 0.095 3.905 10 N -0.226 5.226 11 C -0.060 4.060 12 C -0.197 4.197 13 C -0.094 4.094 14 C 0.033 3.967 15 N -0.330 5.330 16 C 0.399 3.601 17 O -0.458 6.458 18 N -0.333 5.333 19 C -0.062 4.062 20 C 0.172 3.828 21 H 0.084 0.916 22 C -0.205 4.205 23 C -0.567 4.567 24 H 0.077 0.923 25 C -0.137 4.137 26 N -0.525 5.525 27 Si 0.727 3.273 28 H -0.202 1.202 29 H -0.211 1.211 30 H -0.202 1.202 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.174 0.826 39 H 0.157 0.843 40 H 0.186 0.814 41 H 0.246 0.754 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.105 0.895 45 H 0.049 0.951 46 H 0.113 0.887 47 H 0.030 0.970 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.234 23.586 3.862 23.932 hybrid contribution 0.451 -0.914 -1.021 1.443 sum 1.685 22.672 2.841 22.911 Atomic orbital electron populations 1.20716 0.90795 1.02859 1.02634 1.20083 0.96644 0.92219 0.98881 1.20897 0.94188 0.96939 1.01104 1.21167 0.94231 0.98119 0.99866 1.20970 0.99957 0.91738 1.00694 1.21290 0.92907 0.99211 0.99754 1.18273 0.89891 0.83480 1.02362 1.84498 1.69732 1.36256 1.25528 1.19520 0.95722 0.90206 0.85098 1.67272 1.21907 1.34902 0.98564 1.22242 0.96034 0.94330 0.93408 1.21981 1.02473 0.95510 0.99693 1.21909 0.96661 1.01336 0.89483 1.17591 1.00849 0.89607 0.88660 1.42849 1.75729 1.06080 1.08360 1.15969 0.78700 0.80065 0.85344 1.90820 1.57611 1.69103 1.28288 1.47643 1.70104 1.09535 1.06060 1.21586 0.99454 0.96778 0.88376 1.18925 0.93419 0.70884 0.99544 0.91650 1.22104 0.96275 1.04467 0.97661 1.21288 1.18881 0.91544 1.25003 0.92281 1.24874 0.95938 0.97001 0.95858 1.69867 1.37636 1.04958 1.40066 0.86540 0.81697 0.78099 0.80967 1.20246 1.21141 1.20219 0.90919 0.91344 0.91321 0.85647 0.85797 0.85550 0.85473 0.82625 0.84338 0.81433 0.75378 0.93616 0.93412 0.89486 0.95125 0.88685 0.96952 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.63 36.00 0.35 -0.78 16 2 C -0.08 -0.88 5.88 -104.47 -0.61 -1.49 16 3 C -0.11 -1.06 9.70 -39.61 -0.38 -1.44 16 4 C -0.12 -1.01 10.04 -39.56 -0.40 -1.41 16 5 C -0.12 -1.12 10.04 -39.61 -0.40 -1.52 16 6 C -0.11 -1.36 9.99 -39.43 -0.39 -1.75 16 7 C 0.10 1.33 4.94 -39.20 -0.19 1.14 16 8 O -0.25 -3.66 8.49 -3.08 -0.03 -3.69 16 9 C 0.28 4.13 7.29 -16.94 -0.12 4.01 16 10 N -0.50 -7.06 9.31 -13.17 -0.12 -7.19 16 11 C 0.10 1.15 11.17 -17.54 -0.20 0.95 16 12 C -0.18 -2.16 10.10 -39.45 -0.40 -2.56 16 13 C -0.07 -1.03 8.82 -39.13 -0.35 -1.37 16 14 C 0.13 2.16 6.47 -83.31 -0.54 1.62 16 15 N -0.68 -11.52 5.17 -14.00 -0.07 -11.59 16 16 C 0.70 14.58 8.10 -86.92 -0.70 13.87 16 17 O -0.58 -13.92 12.87 5.29 0.07 -13.85 16 18 N -0.60 -12.67 2.75 -181.00 -0.50 -13.17 16 19 C 0.08 1.36 9.25 59.85 0.55 1.91 16 20 C 0.27 6.84 2.64 -69.08 -0.18 6.66 16 21 H 0.07 1.90 6.90 -51.93 -0.36 1.54 16 22 C -0.15 -3.43 8.97 37.16 0.33 -3.10 16 23 C -0.53 -14.10 7.99 -34.44 -0.28 -14.37 16 24 H 0.06 1.55 7.33 -52.48 -0.38 1.17 16 25 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 26 N -0.89 -24.77 11.32 55.43 0.63 -24.15 16 27 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 30 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 33 H 0.07 0.73 7.53 -51.93 -0.39 0.34 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.17 2.95 5.88 -52.49 -0.31 2.64 16 41 H 0.41 6.00 6.06 -40.82 -0.25 5.75 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.66 6.28 -51.93 -0.33 0.33 16 44 H 0.09 1.52 7.02 -51.92 -0.36 1.16 16 45 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 46 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 47 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 397.01 15.07 5.98 5.98 Total: -1.00 -31.62 397.01 -9.52 -41.15 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.45 Total: 8.56 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -4.01 Total: 2.05 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.07 Total: -56.09 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: 0.04 Total: -17.54 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.62 -9.52 -41.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095409909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.857 kcal (2) G-P(sol) polarization free energy of solvation -31.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds