Wall clock time and date at job start Tue Mar 31 2020 04:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38161 * 120.02965 * 2 1 4 4 C 1.38249 * 120.05704 * 180.27317 * 3 2 1 5 5 C 1.38294 * 120.11695 * 359.69910 * 4 3 2 6 6 C 1.38109 * 120.05722 * 0.02562 * 5 4 3 7 7 C 1.38733 * 120.02913 * 179.71828 * 2 1 3 8 8 O 1.35883 * 120.05976 * 0.03068 * 7 2 1 9 9 C 1.35742 * 117.99702 * 274.60420 * 8 7 2 10 10 N 1.32176 * 119.72713 * 5.31037 * 9 8 7 11 11 C 1.31990 * 121.71208 * 180.31526 * 10 9 8 12 12 C 1.38083 * 120.97591 * 359.65321 * 11 10 9 13 13 C 1.38740 * 119.34963 * 0.02572 * 12 11 10 14 14 C 1.38961 * 118.42349 * 359.97438 * 13 12 11 15 15 N 1.40157 * 120.50208 * 180.02562 * 14 13 12 16 16 C 1.34774 * 119.99834 * 335.53243 * 15 14 13 17 17 O 1.21588 * 120.00553 * 354.27800 * 16 15 14 18 18 N 1.34783 * 119.99493 * 174.27722 * 16 15 14 19 19 C 1.46502 * 119.99750 * 359.97438 * 18 16 15 20 20 C 1.46499 * 120.00075 * 179.97438 * 18 16 15 21 21 H 1.09007 * 109.46847 * 0.02562 * 20 18 16 22 22 C 1.53001 * 109.47053 * 119.99921 * 20 18 16 23 23 C 1.50699 * 109.47288 * 240.00234 * 20 18 16 24 24 H 1.08004 * 119.99779 * 359.97438 * 23 20 18 25 25 C 1.37873 * 120.00152 * 180.02562 * 23 20 18 26 26 N 1.31523 * 119.99793 * 359.97438 * 25 23 20 27 27 Si 1.86795 * 120.00265 * 179.97438 * 25 23 20 28 28 H 1.48500 * 109.47071 * 59.99512 * 27 25 23 29 29 H 1.48493 * 109.47298 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.47002 * 299.99577 * 27 25 23 31 31 H 1.08993 * 109.47514 * 270.27639 * 1 2 3 32 32 H 1.09006 * 109.46996 * 30.28506 * 1 2 3 33 33 H 1.09005 * 109.46765 * 150.27700 * 1 2 3 34 34 H 1.07996 * 119.97119 * 359.97311 * 3 2 1 35 35 H 1.08006 * 119.93743 * 179.72425 * 4 3 2 36 36 H 1.07999 * 119.96711 * 180.02562 * 5 4 3 37 37 H 1.07993 * 120.02864 * 180.02562 * 6 5 4 38 38 H 1.08001 * 119.50764 * 179.67947 * 11 10 9 39 39 H 1.07998 * 120.32772 * 180.02562 * 12 11 10 40 40 H 1.07995 * 120.79233 * 180.02562 * 13 12 11 41 41 H 0.96998 * 119.99562 * 155.53776 * 15 14 13 42 42 H 1.08996 * 109.47211 * 269.99811 * 19 18 16 43 43 H 1.09000 * 109.47271 * 30.00391 * 19 18 16 44 44 H 1.09008 * 109.46889 * 150.00092 * 19 18 16 45 45 H 1.08994 * 109.46910 * 60.00049 * 22 20 18 46 46 H 1.09001 * 109.47179 * 180.02562 * 22 20 18 47 47 H 1.09006 * 109.47072 * 300.00043 * 22 20 18 48 48 H 0.97000 * 119.99796 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1968 -0.0057 5 6 4.2754 0.0009 -0.0051 6 6 3.5891 -1.1976 0.0006 7 6 2.2013 -1.2011 0.0059 8 8 1.5237 -2.3789 0.0111 9 6 1.1220 -2.8777 1.2079 10 7 1.3019 -2.1671 2.3078 11 6 0.9320 -2.6165 3.4924 12 6 0.3319 -3.8528 3.6279 13 6 0.1167 -4.6315 2.5000 14 6 0.5163 -4.1330 1.2659 15 7 0.3195 -4.8827 0.0982 16 6 0.2166 -6.2247 0.1684 17 8 0.3979 -6.7938 1.2274 18 7 -0.0872 -6.9358 -0.9355 19 6 -0.3062 -6.2499 -2.2114 20 6 -0.1985 -8.3946 -0.8595 21 1 -0.0041 -8.7210 0.1622 22 6 -1.6093 -8.8205 -1.2708 23 6 0.8072 -9.0242 -1.7885 24 1 1.4634 -8.4001 -2.3770 25 6 0.8889 -10.3969 -1.8879 26 7 0.0895 -11.1569 -1.1715 27 14 2.1351 -11.1774 -3.0399 28 1 3.5046 -10.7644 -2.6410 29 1 2.0223 -12.6561 -2.9628 30 1 1.8694 -10.7323 -4.4315 31 1 -0.3634 0.0050 1.0276 32 1 -0.3633 0.8875 -0.5183 33 1 -0.3633 -0.8925 -0.5096 34 1 1.6584 2.1314 -0.0004 35 1 4.1194 2.1330 -0.0102 36 1 5.3554 0.0043 -0.0092 37 1 4.1319 -2.1312 0.0014 38 1 1.1007 -2.0081 4.3686 39 1 0.0330 -4.2100 4.6022 40 1 -0.3510 -5.6017 2.5790 41 1 0.2574 -4.4357 -0.7604 42 1 -1.3607 -5.9921 -2.3090 43 1 0.2946 -5.3410 -2.2431 44 1 -0.0152 -6.9065 -3.0315 45 1 -1.8041 -8.4940 -2.2922 46 1 -1.6923 -9.9059 -1.2138 47 1 -2.3368 -8.3651 -0.5987 48 1 0.1473 -12.1226 -1.2412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095409909.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:19 Heat of formation + Delta-G solvation = 3.070765 kcal Electronic energy + Delta-G solvation = -31493.392052 eV Core-core repulsion = 27321.075247 eV Total energy + Delta-G solvation = -4172.316805 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 355.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.42424 -41.35212 -40.22330 -38.48755 -37.47785 -36.13835 -34.79724 -33.68083 -32.83460 -31.86694 -31.05008 -29.96587 -27.83003 -27.70217 -27.30210 -25.44399 -24.62079 -23.31960 -22.88643 -22.35580 -20.87832 -19.93016 -19.58650 -18.65251 -17.99896 -17.88510 -17.42521 -16.98302 -16.91241 -16.53208 -16.13727 -15.98933 -15.74660 -15.38498 -14.99049 -14.89039 -14.48225 -14.47008 -14.30446 -14.11082 -14.05279 -13.59273 -13.44419 -13.41922 -13.23917 -13.08923 -12.91661 -12.85888 -12.76261 -12.62946 -12.31650 -12.24397 -12.15183 -12.08558 -11.81174 -11.36637 -11.18821 -10.68716 -10.52268 -10.31263 -9.81773 -9.57139 -9.50251 -8.91318 -8.15217 -6.31452 0.05781 0.11810 0.22671 0.38800 1.41048 1.43222 1.50000 1.59724 1.95025 2.07325 2.40880 2.78369 2.87833 2.93583 3.12911 3.40050 3.77356 3.87414 3.89439 4.02964 4.13819 4.15596 4.26626 4.37242 4.40870 4.52719 4.62426 4.68361 4.70434 4.72145 4.74194 4.86938 4.90474 4.94122 4.97029 5.05413 5.17154 5.20551 5.26805 5.38930 5.41089 5.49608 5.51674 5.54314 5.60471 5.63802 5.89365 5.92842 6.12592 6.18329 6.42934 6.74777 6.81572 6.96058 7.33935 7.52379 8.88904 Molecular weight = 355.17amu Principal moments of inertia in cm(-1) A = 0.013490 B = 0.002610 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.186098 B =10727.113402 C =11638.347000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.089 4.089 3 C -0.113 4.113 4 C -0.109 4.109 5 C -0.117 4.117 6 C -0.134 4.134 7 C 0.071 3.929 8 O -0.262 6.262 9 C 0.277 3.723 10 N -0.511 5.511 11 C 0.108 3.892 12 C -0.169 4.169 13 C -0.082 4.082 14 C 0.101 3.899 15 N -0.666 5.666 16 C 0.694 3.306 17 O -0.620 6.620 18 N -0.608 5.608 19 C 0.080 3.920 20 C 0.279 3.721 21 H 0.015 0.985 22 C -0.131 4.131 23 C -0.542 4.542 24 H 0.059 0.941 25 C 0.018 3.982 26 N -0.915 5.915 27 Si 0.963 3.037 28 H -0.280 1.280 29 H -0.282 1.282 30 H -0.262 1.262 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.116 0.884 38 H 0.198 0.802 39 H 0.170 0.830 40 H 0.142 0.858 41 H 0.418 0.582 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.046 0.954 46 H 0.070 0.930 47 H 0.021 0.979 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.688 27.033 3.138 27.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.090 4.090 3 C -0.130 4.130 4 C -0.127 4.127 5 C -0.135 4.135 6 C -0.153 4.153 7 C 0.029 3.971 8 O -0.169 6.169 9 C 0.097 3.903 10 N -0.233 5.233 11 C -0.048 4.048 12 C -0.189 4.189 13 C -0.110 4.110 14 C 0.002 3.998 15 N -0.316 5.316 16 C 0.396 3.604 17 O -0.501 6.501 18 N -0.342 5.342 19 C -0.063 4.063 20 C 0.177 3.823 21 H 0.033 0.967 22 C -0.190 4.190 23 C -0.580 4.580 24 H 0.077 0.923 25 C -0.182 4.182 26 N -0.554 5.554 27 Si 0.788 3.212 28 H -0.205 1.205 29 H -0.208 1.208 30 H -0.187 1.187 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.171 0.829 35 H 0.175 0.825 36 H 0.166 0.834 37 H 0.134 0.866 38 H 0.214 0.786 39 H 0.187 0.813 40 H 0.160 0.840 41 H 0.257 0.743 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.065 0.935 46 H 0.089 0.911 47 H 0.040 0.960 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.071 27.050 3.474 27.351 hybrid contribution 0.234 -1.801 -0.796 1.983 sum 2.306 25.250 2.678 25.496 Atomic orbital electron populations 1.20698 0.90223 1.03266 1.02418 1.20301 0.97278 0.92304 0.99090 1.21280 0.94737 0.97227 0.99794 1.21587 0.94238 0.99002 0.97873 1.21281 1.01163 0.91261 0.99773 1.21396 0.92829 0.99920 1.01157 1.18601 0.90408 0.83532 1.04577 1.84481 1.69851 1.37249 1.25324 1.19524 0.95199 0.89727 0.85826 1.67408 1.22144 1.34852 0.98897 1.22960 0.93739 0.94194 0.93921 1.22285 1.01533 0.95216 0.99841 1.21855 0.97389 1.00942 0.90794 1.17771 1.03081 0.90499 0.88468 1.42501 1.75256 1.04506 1.09346 1.16081 0.78482 0.81185 0.84677 1.90790 1.59279 1.70302 1.29760 1.47502 1.70465 1.08394 1.07802 1.21798 1.01547 0.97165 0.85780 1.18507 0.94076 0.73330 0.96387 0.96741 1.21883 0.95552 1.02819 0.98751 1.21548 1.19310 0.92025 1.25138 0.92270 1.25683 0.97668 0.97520 0.97311 1.70006 1.38972 1.05128 1.41269 0.85534 0.78904 0.77176 0.79543 1.20537 1.20771 1.18700 0.91401 0.89013 0.92804 0.82884 0.82505 0.83388 0.86616 0.78550 0.81267 0.84019 0.74266 0.91272 0.90686 0.90317 0.93470 0.91107 0.96025 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.02 9.63 71.24 0.69 -1.33 16 2 C -0.09 -1.87 5.88 -19.76 -0.12 -1.99 16 3 C -0.11 -1.76 9.70 22.25 0.22 -1.54 16 4 C -0.11 -1.54 10.04 22.29 0.22 -1.31 16 5 C -0.12 -2.02 10.04 22.25 0.22 -1.79 16 6 C -0.13 -3.18 9.99 22.37 0.22 -2.95 16 7 C 0.07 1.81 4.94 22.52 0.11 1.92 16 8 O -0.26 -7.69 8.49 -33.92 -0.29 -7.97 16 9 C 0.28 8.38 7.29 84.94 0.62 9.00 16 10 N -0.51 -13.74 9.31 -308.44 -2.87 -16.61 16 11 C 0.11 2.34 11.17 84.63 0.95 3.28 16 12 C -0.17 -3.96 10.10 22.35 0.23 -3.74 16 13 C -0.08 -2.64 8.82 22.56 0.20 -2.44 16 14 C 0.10 3.37 6.47 38.29 0.25 3.62 16 15 N -0.67 -23.33 5.17 -316.45 -1.64 -24.97 16 16 C 0.69 30.38 8.10 179.05 1.45 31.83 16 17 O -0.62 -31.78 12.87 -3.99 -0.05 -31.83 16 18 N -0.61 -26.46 2.75 -844.82 -2.33 -28.79 16 19 C 0.08 2.60 9.25 127.77 1.18 3.78 16 20 C 0.28 14.60 2.64 44.25 0.12 14.71 16 21 H 0.01 0.91 6.90 -2.38 -0.02 0.89 16 22 C -0.13 -6.32 8.97 71.98 0.65 -5.67 16 23 C -0.54 -29.60 7.99 25.60 0.20 -29.39 16 24 H 0.06 3.16 7.33 -2.91 -0.02 3.13 16 25 C 0.02 0.99 5.30 84.65 0.45 1.44 16 26 N -0.92 -52.56 11.32 21.45 0.24 -52.32 16 27 Si 0.96 43.24 29.54 68.60 2.03 45.26 16 28 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 29 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 30 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.09 1.20 8.09 -2.38 -0.02 1.18 16 33 H 0.05 1.13 7.53 -2.38 -0.02 1.12 16 34 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 35 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 36 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.12 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.20 2.59 8.06 -2.91 -0.02 2.56 16 39 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 40 H 0.14 5.36 5.88 -2.91 -0.02 5.35 16 41 H 0.42 12.48 6.06 -92.71 -0.56 11.92 16 42 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.07 2.01 6.28 -2.39 -0.02 1.99 16 44 H 0.08 2.72 7.02 -2.38 -0.02 2.70 16 45 H 0.05 2.05 7.67 -2.39 -0.02 2.04 16 46 H 0.07 3.77 6.07 -2.39 -0.01 3.75 16 47 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 48 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -72.72 397.01 3.38 -69.34 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: 0.43 Total: 30.46 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 7.85 Total: 17.44 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -6.59 Total: -122.69 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -0.34 Total: -39.81 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -72.72 3.38 -69.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095409909.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.409 kcal (2) G-P(sol) polarization free energy of solvation -72.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds