Wall clock time and date at job start Tue Mar 31 2020 05:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99953 * 2 1 4 4 H 1.48499 * 109.47354 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46974 * 300.00097 * 3 2 1 6 6 H 1.48503 * 109.47225 * 60.00008 * 3 2 1 7 7 C 1.37870 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.08012 * 120.00220 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00177 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47365 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47123 * 179.97438 * 10 9 7 12 12 N 1.46901 * 109.47161 * 185.26624 * 11 10 9 13 13 C 1.47187 * 111.00342 * 297.61586 * 12 11 10 14 14 C 1.52977 * 108.72716 * 305.62844 * 13 12 11 15 15 N 1.46008 * 110.04448 * 309.70905 * 14 13 12 16 16 C 1.33711 * 122.92598 * 18.15876 * 15 14 13 17 17 O 1.21279 * 118.62371 * 178.31761 * 16 15 14 18 18 C 1.46902 * 111.00131 * 174.71944 * 12 11 10 19 19 H 1.08999 * 109.38661 * 193.22941 * 18 12 11 20 20 C 1.50700 * 109.38684 * 312.91975 * 18 12 11 21 21 C 1.38250 * 120.00347 * 101.48968 * 20 18 12 22 22 C 1.38219 * 120.00407 * 179.81170 * 21 20 18 23 23 C 1.38260 * 119.99479 * 0.41464 * 22 21 20 24 24 C 1.38214 * 120.00268 * 359.81806 * 23 22 21 25 25 C 1.38216 * 119.99805 * 281.76449 * 20 18 12 26 26 C 1.50700 * 120.00197 * 359.97438 * 25 20 18 27 27 F 1.39897 * 109.47551 * 179.30310 * 26 25 20 28 28 F 1.39905 * 109.47030 * 299.30359 * 26 25 20 29 29 F 1.39900 * 109.47286 * 59.29820 * 26 25 20 30 30 H 0.97003 * 120.00263 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47024 * 60.00263 * 9 7 2 32 32 H 1.09001 * 109.47318 * 299.99906 * 9 7 2 33 33 H 1.09001 * 109.46983 * 300.00304 * 10 9 7 34 34 H 1.09006 * 109.46981 * 60.00269 * 10 9 7 35 35 H 1.08998 * 109.47156 * 305.27058 * 11 10 9 36 36 H 1.09003 * 109.46746 * 65.27617 * 11 10 9 37 37 H 1.09001 * 109.59060 * 65.40135 * 13 12 11 38 38 H 1.08999 * 109.59097 * 185.85237 * 13 12 11 39 39 H 1.09003 * 109.37838 * 69.88404 * 14 13 12 40 40 H 1.09004 * 109.37308 * 189.53080 * 14 13 12 41 41 H 0.96997 * 118.53401 * 198.19079 * 15 14 13 42 42 H 1.08001 * 119.99843 * 359.97438 * 21 20 18 43 43 H 1.07997 * 120.00024 * 180.21397 * 22 21 20 44 44 H 1.07999 * 119.99549 * 179.78768 * 23 22 21 45 45 H 1.07994 * 120.00147 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9870 0.0012 12 7 2.4299 -6.1007 0.1283 13 6 3.3506 -6.1424 -1.0193 14 6 2.5276 -6.1843 -2.3081 15 7 1.5168 -7.2344 -2.2225 16 6 1.1288 -7.7770 -1.0636 17 8 0.2602 -8.6232 -1.0803 18 6 1.7239 -7.3823 0.2584 19 1 2.4256 -8.1506 0.5831 20 6 0.6253 -7.2467 1.2810 21 6 -0.6853 -7.0873 0.8706 22 6 -1.6934 -6.9669 1.8085 23 6 -1.3900 -6.9972 3.1571 24 6 -0.0793 -7.1517 3.5674 25 6 0.9286 -7.2760 2.6291 26 6 2.3578 -7.4442 3.0764 27 9 2.4141 -7.4276 4.4742 28 9 2.8538 -8.6641 2.6042 29 9 3.1325 -6.3970 2.5661 30 1 -0.4851 0.8400 -0.0004 31 1 0.6248 -2.5571 -0.8897 32 1 0.6240 -2.5567 0.8903 33 1 2.8720 -3.6043 -0.8894 34 1 2.8720 -3.6043 0.8906 35 1 0.7850 -5.0048 0.8404 36 1 0.9261 -5.0870 -0.9321 37 1 3.9796 -5.2522 -1.0159 38 1 3.9747 -7.0338 -0.9549 39 1 2.0376 -5.2219 -2.4557 40 1 3.1874 -6.3853 -3.1521 41 1 1.1089 -7.5529 -3.0428 42 1 -0.9217 -7.0596 -0.1828 43 1 -2.7175 -6.8458 1.4879 44 1 -2.1773 -6.8996 3.8899 45 1 0.1577 -7.1750 4.6207 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096006563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:07 Heat of formation + Delta-G solvation = -141.861020 kcal Electronic energy + Delta-G solvation = -34082.750842 eV Core-core repulsion = 29264.573921 eV Total energy + Delta-G solvation = -4818.176921 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.01190 -47.61037 -47.29545 -41.38611 -39.07932 -37.67865 -34.85027 -33.83775 -32.36840 -31.79180 -31.03821 -29.17764 -27.51357 -26.06523 -24.97126 -24.03642 -22.89895 -22.02566 -21.61018 -20.24704 -18.92368 -18.31394 -18.23885 -18.16537 -17.43240 -16.86730 -16.41275 -16.15571 -15.71638 -15.48167 -15.09413 -14.78614 -14.53400 -14.37914 -14.30253 -14.21916 -13.95165 -13.83515 -13.54002 -13.52221 -13.33590 -13.12723 -13.05039 -12.81064 -12.51462 -12.32891 -12.19329 -11.65173 -11.55290 -11.41258 -11.36501 -11.11478 -10.91541 -10.61073 -10.52271 -10.35225 -9.70752 -9.42060 -9.28068 -9.21577 -9.08263 -8.93744 -8.36868 -8.24047 -6.01727 -4.03841 0.86777 1.15609 2.38212 2.78695 2.97659 3.29638 3.37512 3.40902 3.41874 3.80955 3.89493 4.11356 4.25015 4.33512 4.45353 4.60856 4.76373 4.82864 4.87516 4.92236 5.08114 5.17159 5.23792 5.34506 5.35587 5.49307 5.53600 5.60784 5.76570 5.79771 5.87593 6.08471 6.17948 6.20806 6.29787 6.47567 6.54528 6.65484 6.66456 6.88718 7.06465 7.08772 7.15326 7.65588 7.79355 7.98157 7.98213 8.40837 9.03442 9.60515 11.09672 Molecular weight = 356.15amu Principal moments of inertia in cm(-1) A = 0.009913 B = 0.003777 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2823.801205 B = 7411.234828 C = 8109.522278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.102 4.102 11 C 0.044 3.956 12 N -0.508 5.508 13 C 0.036 3.964 14 C 0.066 3.934 15 N -0.716 5.716 16 C 0.497 3.503 17 O -0.545 6.545 18 C 0.093 3.907 19 H 0.126 0.874 20 C -0.019 4.019 21 C -0.094 4.094 22 C -0.088 4.088 23 C -0.116 4.116 24 C -0.078 4.078 25 C -0.161 4.161 26 C 0.505 3.495 27 F -0.183 7.183 28 F -0.183 7.183 29 F -0.147 7.147 30 H 0.259 0.741 31 H 0.012 0.988 32 H 0.015 0.985 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.035 0.965 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.400 0.600 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.211 -17.980 1.689 18.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.140 4.140 11 C -0.083 4.083 12 N -0.231 5.231 13 C -0.092 4.092 14 C -0.060 4.060 15 N -0.369 5.369 16 C 0.282 3.718 17 O -0.422 6.422 18 C -0.018 4.018 19 H 0.144 0.856 20 C -0.020 4.020 21 C -0.113 4.113 22 C -0.106 4.106 23 C -0.134 4.134 24 C -0.096 4.096 25 C -0.163 4.163 26 C 0.451 3.549 27 F -0.165 7.165 28 F -0.165 7.165 29 F -0.128 7.128 30 H 0.069 0.931 31 H 0.030 0.970 32 H 0.034 0.966 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.129 0.871 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.236 0.764 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.059 -18.142 2.328 18.407 hybrid contribution 0.032 0.784 -1.140 1.384 sum 2.091 -17.358 1.188 17.524 Atomic orbital electron populations 1.69973 1.06061 1.26447 1.51041 1.25015 0.94813 0.99232 0.95372 0.86567 0.80169 0.83897 0.77558 1.19705 1.21096 1.21021 1.21257 0.93047 0.90932 1.50288 0.92604 1.19045 0.93944 0.91321 0.97037 1.21650 0.99192 0.92235 1.00956 1.22574 0.94462 0.90740 1.00503 1.62933 1.18714 1.00791 1.40647 1.22628 0.95476 1.04747 0.86390 1.22234 0.91301 0.91568 1.00853 1.45581 1.42432 1.39985 1.08870 1.20876 0.82448 0.81503 0.87018 1.90751 1.31192 1.32804 1.87410 1.21051 0.94727 0.95475 0.90577 0.85619 1.18823 0.94071 0.97711 0.91444 1.21211 0.91398 0.97872 1.00804 1.21355 0.99734 0.96510 0.92977 1.21172 0.96068 0.99944 0.96222 1.20960 0.92215 0.96995 0.99443 1.19708 0.91973 1.10065 0.94509 1.18260 0.87639 0.74469 0.74523 1.93139 1.96923 1.96302 1.30103 1.93145 1.89461 1.45756 1.88110 1.93376 1.76641 1.56526 1.86229 0.93101 0.96993 0.96626 0.93425 0.92089 0.90458 0.94685 0.87106 0.90047 0.89971 0.89879 0.76431 0.84905 0.84979 0.84805 0.84360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.10 -1.97 4.83 -26.73 -0.13 -2.10 16 11 C 0.04 0.71 3.73 -3.82 -0.01 0.70 16 12 N -0.51 -6.97 3.05 -229.47 -0.70 -7.67 16 13 C 0.04 0.39 5.56 -3.68 -0.02 0.37 16 14 C 0.07 0.66 6.43 -4.32 -0.03 0.63 16 15 N -0.72 -8.01 5.34 -61.07 -0.33 -8.33 16 16 C 0.50 6.83 5.77 -11.68 -0.07 6.76 16 17 O -0.54 -8.86 15.50 5.56 0.09 -8.77 16 18 C 0.09 1.26 1.89 -70.23 -0.13 1.13 16 19 H 0.13 1.67 6.05 -51.93 -0.31 1.35 16 20 C -0.02 -0.28 3.39 -104.63 -0.35 -0.63 16 21 C -0.09 -1.32 7.59 -39.58 -0.30 -1.62 16 22 C -0.09 -1.04 10.05 -39.58 -0.40 -1.44 16 23 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 24 C -0.08 -0.92 9.43 -39.58 -0.37 -1.30 16 25 C -0.16 -2.18 5.37 -104.62 -0.56 -2.74 16 26 C 0.51 6.82 2.86 36.01 0.10 6.93 16 27 F -0.18 -2.37 15.97 2.25 0.04 -2.34 16 28 F -0.18 -2.41 15.42 2.25 0.03 -2.37 16 29 F -0.15 -2.20 14.92 2.25 0.03 -2.16 16 30 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.85 6.86 -51.93 -0.36 0.50 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.08 1.39 6.11 -51.93 -0.32 1.07 16 36 H 0.03 0.57 5.78 -51.93 -0.30 0.27 16 37 H 0.11 1.21 6.78 -51.93 -0.35 0.86 16 38 H 0.08 0.77 8.08 -51.93 -0.42 0.36 16 39 H 0.08 0.95 6.82 -51.93 -0.35 0.59 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.40 3.90 8.84 -40.82 -0.36 3.54 16 42 H 0.13 1.95 6.05 -52.49 -0.32 1.63 16 43 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.14 1.37 7.16 -52.49 -0.38 0.99 16 LS Contribution 364.12 15.07 5.49 5.49 Total: -1.00 -31.99 364.12 -8.40 -40.39 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.55 Total: 2.83 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -3.22 Total: -7.57 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: -0.29 Total: -41.81 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 9 Polarization: -6.98 SS G_CDS: 0.10 Total: -6.87 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.99 -8.40 -40.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096006563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.469 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds