Wall clock time and date at job start Tue Mar 31 2020 05:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86805 * 120.00066 * 2 1 4 4 H 1.48498 * 109.47256 * 270.00274 * 3 2 1 5 5 H 1.48504 * 109.46792 * 30.00069 * 3 2 1 6 6 H 1.48499 * 109.47094 * 149.99904 * 3 2 1 7 7 C 1.38955 * 120.00383 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99628 * 359.97438 * 7 2 1 9 9 N 1.37090 * 120.00059 * 179.97438 * 7 2 1 10 10 C 1.34786 * 120.00156 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99393 * 0.02562 * 10 9 7 12 12 C 1.50694 * 120.00299 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.47216 * 179.97438 * 12 10 9 14 14 C 1.39666 * 120.00126 * 179.97438 * 13 12 10 15 15 C 1.38912 * 120.07669 * 359.72242 * 14 13 12 16 16 C 1.38103 * 119.93079 * 180.27360 * 15 14 13 17 17 C 1.50696 * 119.96758 * 180.02562 * 16 15 14 18 18 F 1.39896 * 109.47378 * 179.97438 * 17 16 15 19 19 F 1.39903 * 109.46692 * 299.98006 * 17 16 15 20 20 F 1.39898 * 109.47392 * 59.97582 * 17 16 15 21 21 C 1.38290 * 120.06941 * 0.02562 * 16 15 14 22 22 C 1.38284 * 120.15391 * 359.97438 * 21 16 15 23 23 C 1.50697 * 119.96606 * 180.02562 * 22 21 16 24 24 F 1.39897 * 109.47020 * 269.98165 * 23 22 21 25 25 F 1.39903 * 109.46974 * 29.97964 * 23 22 21 26 26 F 1.39904 * 109.47142 * 149.98079 * 23 22 21 27 27 C 1.38105 * 120.07205 * 0.02562 * 22 21 16 28 28 H 0.96999 * 119.99992 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00411 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.47386 * 59.99839 * 12 10 9 31 31 H 1.09004 * 109.46921 * 300.00238 * 12 10 9 32 32 H 0.97002 * 119.99239 * 0.02562 * 13 12 10 33 33 H 1.08007 * 120.03675 * 0.26037 * 15 14 13 34 34 H 1.07997 * 119.92189 * 179.97438 * 21 16 15 35 35 H 1.07996 * 120.04076 * 179.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0539 -2.3705 -0.0011 11 8 3.4474 -3.4209 -0.0011 12 6 5.5608 -2.3704 -0.0011 13 7 6.0492 -3.7517 -0.0005 14 6 7.4224 -4.0068 -0.0009 15 6 8.3264 -2.9522 -0.0077 16 6 9.6836 -3.2080 -0.0138 17 6 10.6651 -2.0645 -0.0207 18 9 11.9696 -2.5697 -0.0255 19 9 10.4631 -1.2835 -1.1637 20 9 10.4736 -1.2787 1.1208 21 6 10.1428 -4.5124 -0.0137 22 6 9.2457 -5.5647 -0.0069 23 6 9.7508 -6.9845 -0.0062 24 9 9.9002 -7.4269 -1.3249 25 9 10.9868 -7.0394 0.6470 26 9 8.8343 -7.8052 0.6601 27 6 7.8872 -5.3159 -0.0008 28 1 -0.4850 0.8400 0.0004 29 1 3.8649 -0.3632 -0.0007 30 1 5.9242 -1.8566 0.8889 31 1 5.9241 -1.8565 -0.8911 32 1 5.4188 -4.4889 -0.0005 33 1 7.9684 -1.9332 -0.0085 34 1 11.2046 -4.7097 -0.0189 35 1 7.1870 -6.1381 0.0041 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096450102.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:33 Heat of formation + Delta-G solvation = -304.014813 kcal Electronic energy + Delta-G solvation = -31111.811711 eV Core-core repulsion = 25473.080344 eV Total energy + Delta-G solvation = -5638.731367 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 356.070 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.43464 -50.40700 -47.95277 -47.92175 -47.87780 -47.86613 -40.21245 -38.71387 -35.80231 -34.20724 -32.97209 -31.94494 -30.64189 -27.42768 -26.50623 -26.37414 -24.37945 -22.35068 -21.84236 -19.78652 -19.36503 -18.97082 -18.77540 -18.70495 -18.61971 -18.41778 -17.21299 -16.70966 -16.66819 -15.99987 -15.24845 -15.24366 -14.96128 -14.80603 -14.76149 -14.65473 -14.61905 -14.31567 -14.30983 -14.15437 -14.06447 -14.03832 -14.02956 -14.02614 -13.65013 -13.37844 -13.02449 -12.97205 -12.61574 -12.54402 -12.33858 -12.12346 -11.61565 -11.36003 -10.75348 -10.63687 -10.16922 -9.83626 -9.81587 -8.93464 -8.42975 -7.81135 -6.51255 -4.04748 0.37574 0.82994 2.21664 2.42671 2.88584 2.93693 2.95526 3.02350 3.07222 3.34776 3.39814 3.39986 3.80898 3.85921 3.93054 4.08978 4.17920 4.32591 4.57980 4.63653 4.71212 4.92413 5.01246 5.02597 5.29105 5.49618 5.52693 5.62645 5.67449 5.68773 5.99035 6.89052 7.33352 7.54455 7.89497 8.32142 8.70343 9.17189 9.49058 10.60688 Molecular weight = 356.07amu Principal moments of inertia in cm(-1) A = 0.011738 B = 0.002738 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.916237 B =10225.218277 C =12265.684106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.047 3.953 3 Si 0.880 3.120 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.313 4.313 8 H 0.122 0.878 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.576 6.576 12 C 0.103 3.897 13 N -0.712 5.712 14 C 0.233 3.767 15 C -0.129 4.129 16 C -0.131 4.131 17 C 0.511 3.489 18 F -0.175 7.175 19 F -0.173 7.173 20 F -0.173 7.173 21 C -0.099 4.099 22 C -0.133 4.133 23 C 0.512 3.488 24 F -0.174 7.174 25 F -0.175 7.175 26 F -0.174 7.174 27 C -0.121 4.121 28 H 0.277 0.723 29 H 0.374 0.626 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.419 0.581 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.490 -6.072 -0.039 24.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.158 4.158 3 Si 0.706 3.294 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.441 4.441 8 H 0.140 0.860 9 N -0.210 5.210 10 C 0.221 3.779 11 O -0.460 6.460 12 C -0.025 4.025 13 N -0.341 5.341 14 C 0.125 3.875 15 C -0.152 4.152 16 C -0.134 4.134 17 C 0.457 3.543 18 F -0.157 7.157 19 F -0.155 7.155 20 F -0.155 7.155 21 C -0.120 4.120 22 C -0.135 4.135 23 C 0.458 3.542 24 F -0.155 7.155 25 F -0.156 7.156 26 F -0.155 7.155 27 C -0.144 4.144 28 H 0.088 0.912 29 H 0.207 0.793 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.259 0.741 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 22.753 -6.435 -0.040 23.645 hybrid contribution 0.509 1.158 0.020 1.265 sum 23.262 -5.277 -0.020 23.853 Atomic orbital electron populations 1.69612 1.05756 1.27979 1.47561 1.25083 0.95541 0.98220 0.96980 0.86666 0.79851 0.83741 0.79158 1.19320 1.19864 1.19298 1.19438 0.78859 0.96864 1.48979 0.86045 1.42114 1.07772 1.06026 1.65131 1.19464 0.87740 0.84996 0.85671 1.90563 1.68949 1.30879 1.55613 1.21123 0.95053 0.83794 1.02551 1.44561 1.02368 1.08526 1.78645 1.17439 0.84738 0.92127 0.93229 1.20542 0.90813 0.99786 1.04105 1.19498 0.93364 0.92537 1.07954 1.18164 0.79778 0.82293 0.74048 1.93175 1.39231 1.87044 1.96229 1.93240 1.94842 1.76537 1.50842 1.93239 1.94998 1.76279 1.50942 1.20343 1.00401 0.90009 1.01250 1.19482 0.94635 0.91222 1.08137 1.18158 0.75363 0.86739 0.73977 1.93242 1.95547 1.90844 1.35881 1.93203 1.44146 1.96877 1.81407 1.93216 1.66533 1.74971 1.80764 1.20529 0.94225 0.96320 1.03365 0.91234 0.79286 0.89955 0.89939 0.74074 0.83953 0.83699 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.11 13.96 55.50 0.77 -23.33 16 2 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 3 Si 0.88 17.99 27.74 -169.99 -4.71 13.27 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.27 -4.90 6.52 56.52 0.37 -4.53 16 7 C -0.31 -8.25 10.16 -14.93 -0.15 -8.40 16 8 H 0.12 3.69 7.39 -52.49 -0.39 3.30 16 9 N -0.57 -12.33 5.09 -10.96 -0.06 -12.39 16 10 C 0.44 8.71 7.85 -10.98 -0.09 8.62 16 11 O -0.58 -13.77 15.24 5.55 0.08 -13.68 16 12 C 0.10 1.42 5.39 -5.19 -0.03 1.39 16 13 N -0.71 -9.26 5.70 -59.81 -0.34 -9.61 16 14 C 0.23 2.61 6.65 -83.79 -0.56 2.05 16 15 C -0.13 -1.34 8.86 -39.38 -0.35 -1.69 16 16 C -0.13 -1.31 5.37 -104.65 -0.56 -1.87 16 17 C 0.51 5.04 3.32 36.00 0.12 5.16 16 18 F -0.18 -1.69 15.97 2.25 0.04 -1.66 16 19 F -0.17 -1.80 17.24 2.25 0.04 -1.76 16 20 F -0.17 -1.80 17.23 2.25 0.04 -1.76 16 21 C -0.10 -0.95 8.78 -39.55 -0.35 -1.30 16 22 C -0.13 -1.32 5.45 -104.66 -0.57 -1.89 16 23 C 0.51 5.00 3.36 36.00 0.12 5.12 16 24 F -0.17 -1.78 17.30 2.25 0.04 -1.74 16 25 F -0.18 -1.70 16.46 2.25 0.04 -1.66 16 26 F -0.17 -1.77 16.46 2.25 0.04 -1.74 16 27 C -0.12 -1.25 9.25 -39.38 -0.36 -1.61 16 28 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.37 6.93 5.76 -40.82 -0.24 6.69 16 30 H 0.08 0.97 7.96 -51.93 -0.41 0.56 16 31 H 0.08 0.96 7.94 -51.93 -0.41 0.55 16 32 H 0.42 5.92 7.45 -40.82 -0.30 5.61 16 33 H 0.14 1.32 6.74 -52.48 -0.35 0.96 16 34 H 0.15 1.20 6.69 -52.49 -0.35 0.85 16 35 H 0.15 1.34 7.60 -52.49 -0.40 0.94 16 LS Contribution 334.89 15.07 5.05 5.05 Total: -1.00 -29.01 334.89 -3.87 -32.89 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -2.02 Total: 11.43 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -2.87 Total: 6.68 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.38 Total: -45.32 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.08 Total: -13.68 kcal Atomic # 9 Polarization: -10.54 SS G_CDS: 0.23 Total: -10.31 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -4.71 Total: 13.27 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.01 -3.87 -32.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096450102.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -271.127 kcal (2) G-P(sol) polarization free energy of solvation -29.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -300.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -304.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds