Wall clock time and date at job start Tue Mar 31 2020 05:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47647 * 2 1 4 4 C 1.46494 * 120.00049 * 89.99856 * 3 2 1 5 5 C 1.50698 * 109.47539 * 270.00189 * 4 3 2 6 6 H 1.08002 * 119.99642 * 359.73082 * 5 4 3 7 7 C 1.37877 * 120.00365 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99912 * 359.73281 * 7 5 4 9 9 Si 1.86797 * 120.00126 * 179.72590 * 7 5 4 10 10 H 1.48504 * 109.46968 * 90.00314 * 9 7 5 11 11 H 1.48495 * 109.47606 * 210.00210 * 9 7 5 12 12 H 1.48500 * 109.47221 * 330.00749 * 9 7 5 13 13 C 1.38918 * 119.99829 * 270.00645 * 3 2 1 14 14 C 1.39372 * 119.88223 * 179.97438 * 13 3 2 15 15 C 1.36488 * 120.11675 * 179.97438 * 14 13 3 16 16 C 1.40332 * 119.87840 * 0.02562 * 15 14 13 17 17 C 1.46335 * 120.11296 * 179.97438 * 16 15 14 18 18 C 1.37856 * 120.00200 * 311.20669 * 17 16 15 19 19 C 1.43200 * 120.00092 * 170.08303 * 18 17 16 20 20 N 9.88391 * 99.64068 * 313.08292 * 2 1 3 21 21 C 1.47091 * 119.99998 * 350.08176 * 18 17 16 22 22 O 1.21654 * 120.00221 * 352.99584 * 21 18 17 23 23 N 1.34776 * 119.99867 * 172.99533 * 21 18 17 24 24 C 1.46508 * 119.99946 * 179.97438 * 23 21 18 25 25 C 1.52997 * 109.47081 * 155.00191 * 24 23 21 26 26 C 1.53000 * 109.46868 * 275.00445 * 24 23 21 27 27 C 1.40301 * 119.77359 * 0.02562 * 16 15 14 28 28 C 1.50700 * 120.05969 * 179.97438 * 27 16 15 29 29 C 1.36518 * 119.88002 * 359.73542 * 27 16 15 30 30 H 1.09003 * 109.47223 * 59.99784 * 1 2 3 31 31 H 1.08998 * 109.47417 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46630 * 300.00172 * 1 2 3 33 33 H 1.09003 * 109.47332 * 240.00069 * 2 1 3 34 34 H 1.08998 * 109.47526 * 119.99846 * 2 1 3 35 35 H 1.09002 * 109.47189 * 150.00725 * 4 3 2 36 36 H 1.08995 * 109.47334 * 30.00630 * 4 3 2 37 37 H 0.96996 * 120.00055 * 179.97438 * 8 7 5 38 38 H 1.08000 * 119.94577 * 0.02562 * 14 13 3 39 39 H 1.07995 * 120.06379 * 179.97438 * 15 14 13 40 40 H 1.08000 * 119.99346 * 131.20520 * 17 16 15 41 41 H 0.96996 * 120.00692 * 0.02562 * 23 21 18 42 42 H 1.09004 * 109.46918 * 35.00203 * 24 23 21 43 43 H 1.09004 * 109.47235 * 60.00206 * 25 24 23 44 44 H 1.09006 * 109.46827 * 180.02562 * 25 24 23 45 45 H 1.09001 * 109.47310 * 299.99817 * 25 24 23 46 46 H 1.08999 * 109.47702 * 59.99853 * 26 24 23 47 47 H 1.09005 * 109.46691 * 180.02562 * 26 24 23 48 48 H 1.08999 * 109.47289 * 299.99161 * 26 24 23 49 49 H 1.09007 * 109.47221 * 89.99273 * 28 27 16 50 50 H 1.08998 * 109.47577 * 209.99718 * 28 27 16 51 51 H 1.09005 * 109.46948 * 329.99983 * 28 27 16 52 52 H 1.08008 * 119.94040 * 180.27677 * 29 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 1.0069 2.7823 1.7038 6 1 0.1172 2.7287 1.0938 7 6 0.9952 3.5049 2.8780 8 7 2.0784 3.5697 3.6210 9 14 -0.5591 4.3919 3.4134 10 1 -1.3819 3.4852 4.2538 11 1 -0.1950 5.5991 4.1977 12 1 -1.3363 4.7963 2.2143 13 6 2.2499 2.0361 -1.2031 14 6 2.7140 3.3502 -1.2003 15 6 2.9436 3.9980 -2.3795 16 6 2.7108 3.3386 -3.5962 17 6 2.9546 4.0284 -4.8635 18 6 2.4493 5.2947 -5.0674 19 6 2.8595 6.0538 -6.2102 20 7 3.1852 6.6559 -7.1169 21 6 1.4890 5.8661 -4.1109 22 8 1.0430 5.1782 -3.2122 23 7 1.1030 7.1519 -4.2303 24 6 0.1460 7.7210 -3.2781 25 6 0.3344 9.2378 -3.2106 26 6 -1.2789 7.4038 -3.7361 27 6 2.2425 2.0160 -3.5934 28 6 1.9898 1.3019 -4.8961 29 6 2.0208 1.3756 -2.4083 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.0645 2.7985 1.1383 36 1 2.5507 1.3452 2.0283 37 1 2.0702 4.0783 4.4468 38 1 2.8933 3.8566 -0.2633 39 1 3.3028 5.0164 -2.3763 40 1 3.5304 3.5453 -5.6391 41 1 1.4583 7.7004 -4.9471 42 1 0.3151 7.2895 -2.2914 43 1 0.1653 9.6692 -4.1972 44 1 -0.3774 9.6611 -2.5017 45 1 1.3496 9.4637 -2.8843 46 1 -1.4131 6.3231 -3.7842 47 1 -1.9909 7.8275 -3.0278 48 1 -1.4480 7.8352 -4.7226 49 1 2.8977 0.7868 -5.2102 50 1 1.1877 0.5760 -4.7630 51 1 1.7013 2.0266 -5.6577 52 1 1.6645 0.3559 -2.4050 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096767610.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:26 Heat of formation + Delta-G solvation = 36.840428 kcal Electronic energy + Delta-G solvation = -32063.621228 eV Core-core repulsion = 28028.601880 eV Total energy + Delta-G solvation = -4035.019348 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 355.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.12275 -39.07030 -36.94689 -36.53228 -35.75736 -33.29072 -32.80094 -32.36081 -31.53724 -30.15739 -29.10640 -27.29957 -26.77017 -26.35960 -24.30751 -23.00470 -22.55028 -21.16758 -20.96536 -20.68230 -19.01850 -18.64937 -16.69287 -16.50853 -16.13691 -15.72047 -15.26668 -14.93223 -14.75972 -14.45371 -14.18410 -14.08109 -13.85089 -13.57759 -13.47897 -13.38268 -13.13733 -12.98161 -12.88593 -12.77874 -12.71386 -12.48167 -12.39358 -12.19335 -12.12795 -12.04039 -11.59627 -11.50773 -11.40084 -11.25019 -11.03649 -11.00456 -10.90622 -10.73025 -10.57218 -10.34709 -10.09994 -9.80909 -9.59899 -9.39260 -9.02803 -8.51206 -8.48116 -8.10713 -6.44905 -6.03186 -4.17063 0.54025 2.17524 2.31251 2.54122 2.77614 3.20691 3.26120 3.33335 3.39088 3.66245 3.90148 4.02129 4.40031 4.49294 4.70285 4.87053 4.99410 5.11454 5.18869 5.20781 5.25129 5.28497 5.44327 5.47831 5.60926 5.62324 5.69282 5.71054 5.78418 5.81600 5.83091 5.86398 5.90158 5.99528 6.02062 6.09438 6.15720 6.21479 6.28843 6.39518 6.44991 6.55276 6.57706 6.82406 6.95577 7.03111 7.11154 7.21819 7.32384 7.38981 7.52858 7.54844 7.81158 8.12241 8.19097 8.38313 8.40212 8.91058 9.49422 10.95117 Molecular weight = 355.20amu Principal moments of inertia in cm(-1) A = 0.008122 B = 0.003845 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3446.763768 B = 7280.459480 C = 9644.125849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.596 5.596 4 C 0.246 3.754 5 C -0.526 4.526 6 H 0.062 0.938 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.272 1.272 13 C 0.277 3.723 14 C -0.201 4.201 15 C 0.019 3.981 16 C -0.194 4.194 17 C 0.115 3.885 18 C -0.182 4.182 19 C 0.261 3.739 20 N -0.437 5.437 21 C 0.565 3.435 22 O -0.494 6.494 23 N -0.730 5.730 24 C 0.137 3.863 25 C -0.160 4.160 26 C -0.162 4.162 27 C 0.003 3.997 28 C -0.117 4.117 29 C -0.236 4.236 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.038 0.962 36 H 0.031 0.969 37 H 0.263 0.737 38 H 0.133 0.867 39 H 0.107 0.893 40 H 0.133 0.867 41 H 0.393 0.607 42 H 0.095 0.905 43 H 0.057 0.943 44 H 0.072 0.928 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.052 0.948 49 H 0.069 0.931 50 H 0.065 0.935 51 H 0.060 0.940 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.365 0.983 -15.320 15.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.297 5.297 4 C 0.126 3.874 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.721 3.279 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.197 1.197 13 C 0.166 3.834 14 C -0.224 4.224 15 C -0.001 4.001 16 C -0.197 4.197 17 C 0.091 3.909 18 C -0.189 4.189 19 C -0.052 4.052 20 N -0.114 5.114 21 C 0.352 3.648 22 O -0.368 6.368 23 N -0.383 5.383 24 C 0.033 3.967 25 C -0.218 4.218 26 C -0.221 4.221 27 C 0.002 3.998 28 C -0.173 4.173 29 C -0.259 4.259 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.150 0.850 39 H 0.125 0.875 40 H 0.150 0.850 41 H 0.226 0.774 42 H 0.113 0.887 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.071 0.929 49 H 0.088 0.912 50 H 0.084 0.916 51 H 0.079 0.921 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.194 1.380 -15.583 15.645 hybrid contribution -0.978 0.754 0.421 1.305 sum -1.172 2.135 -15.163 15.357 Atomic orbital electron populations 1.22217 0.96574 1.00575 1.03432 1.21309 0.94348 0.83440 1.01245 1.47269 1.65195 1.12244 1.05007 1.19385 0.97004 0.92454 0.78545 1.21545 0.97926 1.30822 1.06204 0.91963 1.24929 0.96357 0.96298 0.96355 1.69921 1.27563 1.41714 1.14268 0.86562 0.83357 0.79281 0.78735 1.20698 1.21144 1.19656 1.18122 0.88143 0.91176 0.85919 1.20473 1.08593 0.94426 0.98872 1.20442 0.92479 0.96403 0.90774 1.17999 1.15749 0.94714 0.91232 1.22952 0.84625 0.89171 0.94105 1.18133 1.08552 0.97283 0.94967 1.25728 0.93194 0.93615 0.92706 1.81256 1.09979 1.09129 1.11015 1.17643 0.81280 0.81677 0.84231 1.91027 1.55126 1.58481 1.32202 1.46076 1.47026 1.12121 1.33075 1.20937 0.88324 0.93341 0.94109 1.22076 1.02802 0.94549 1.02359 1.22177 0.96029 1.02814 1.01066 1.19202 0.94637 0.91606 0.94325 1.20838 1.01806 1.00054 0.94636 1.20031 1.14445 1.00690 0.90743 0.92903 0.93186 0.90896 0.91930 0.91209 0.94435 0.95055 0.92696 0.84965 0.87534 0.84961 0.77402 0.88684 0.92434 0.90888 0.91938 0.91747 0.91723 0.92937 0.91228 0.91583 0.92053 0.86584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 10.24 37.15 0.38 -2.37 16 2 C 0.12 1.99 5.91 -4.04 -0.02 1.97 16 3 N -0.60 -11.93 2.57 -173.09 -0.44 -12.38 16 4 C 0.25 5.86 4.94 -5.20 -0.03 5.83 16 5 C -0.53 -13.84 8.92 -34.44 -0.31 -14.14 16 6 H 0.06 1.69 7.43 -52.49 -0.39 1.30 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.90 -25.09 13.29 55.43 0.74 -24.36 16 9 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.28 5.31 6.55 -83.82 -0.55 4.76 16 14 C -0.20 -3.95 9.13 -39.79 -0.36 -4.31 16 15 C 0.02 0.31 6.73 -39.43 -0.27 0.05 16 16 C -0.19 -2.83 4.40 -105.08 -0.46 -3.29 16 17 C 0.12 1.32 7.99 -36.47 -0.29 1.03 16 18 C -0.18 -2.18 5.78 -104.52 -0.60 -2.78 16 19 C 0.26 3.09 14.21 -22.47 -0.32 2.77 16 20 N -0.44 -5.78 18.54 41.84 0.78 -5.00 16 21 C 0.57 7.83 6.96 -12.67 -0.09 7.74 16 22 O -0.49 -8.65 12.18 5.23 0.06 -8.58 16 23 N -0.73 -8.50 5.03 -54.98 -0.28 -8.77 16 24 C 0.14 1.56 3.18 -67.93 -0.22 1.34 16 25 C -0.16 -1.40 9.38 37.16 0.35 -1.05 16 26 C -0.16 -1.78 9.48 37.16 0.35 -1.43 16 27 C 0.00 0.05 5.89 -104.47 -0.62 -0.57 16 28 C -0.12 -1.23 9.61 36.01 0.35 -0.88 16 29 C -0.24 -3.84 8.78 -39.80 -0.35 -4.19 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 1.38 7.27 -51.93 -0.38 1.00 16 33 H 0.06 0.88 6.15 -51.93 -0.32 0.57 16 34 H 0.07 1.13 7.89 -51.93 -0.41 0.72 16 35 H 0.04 0.95 6.16 -51.93 -0.32 0.63 16 36 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 37 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.13 2.90 6.11 -52.49 -0.32 2.58 16 39 H 0.11 1.70 7.48 -52.49 -0.39 1.30 16 40 H 0.13 1.10 8.04 -52.49 -0.42 0.68 16 41 H 0.39 3.95 7.51 -40.82 -0.31 3.65 16 42 H 0.10 1.32 7.58 -51.93 -0.39 0.93 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 50 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 51 H 0.06 0.59 7.09 -51.93 -0.37 0.22 16 52 H 0.12 1.70 6.10 -52.48 -0.32 1.38 16 LS Contribution 428.38 15.07 6.46 6.46 Total: -1.00 -29.84 428.38 -8.97 -38.81 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -8.11 Total: 5.69 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -3.15 Total: -7.93 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.79 Total: -50.51 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.06 Total: -8.58 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.46 Total: 6.46 kcal Total: -29.84 -8.97 -38.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096767610.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.649 kcal (2) G-P(sol) polarization free energy of solvation -29.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds