Wall clock time and date at job start Tue Mar 31 2020 05:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38283 * 119.92845 * 2 1 4 4 C 1.38105 * 120.07179 * 179.72236 * 3 2 1 5 5 C 1.38893 * 119.92871 * 0.25489 * 4 3 2 6 6 N 1.39857 * 120.06917 * 180.02562 * 5 4 3 7 7 C 1.46497 * 119.99469 * 188.92497 * 6 5 4 8 8 C 1.50708 * 109.46994 * 68.16085 * 7 6 5 9 9 H 1.07993 * 119.99863 * 359.97438 * 8 7 6 10 10 C 1.37872 * 119.99803 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00276 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99883 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47341 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47531 * 119.99676 * 12 10 8 15 15 H 1.48505 * 109.47215 * 239.99838 * 12 10 8 16 16 C 1.34772 * 120.00127 * 8.92636 * 6 5 4 17 17 O 1.21600 * 120.00269 * 4.71395 * 16 6 5 18 18 C 1.47505 * 119.99619 * 184.70595 * 16 6 5 19 19 C 1.39719 * 120.19520 * 30.16160 * 18 16 6 20 20 C 1.37786 * 119.90739 * 179.69905 * 19 18 16 21 21 C 1.38550 * 120.30087 * 0.57110 * 20 19 18 22 22 N 1.48012 * 119.80640 * 179.70127 * 21 20 19 23 23 O 1.21797 * 120.00426 * 180.02562 * 22 21 20 24 24 O 1.21806 * 119.99812 * 0.02562 * 22 21 20 25 25 C 1.38062 * 120.39057 * 359.72443 * 21 20 19 26 26 C 1.38704 * 120.08698 * 359.97425 * 25 21 20 27 27 O 1.35657 * 120.14881 * 180.02562 * 26 25 21 28 28 C 1.38883 * 119.85601 * 0.02562 * 5 4 3 29 29 C 1.38109 * 119.92402 * 359.97438 * 28 5 4 30 30 H 1.08999 * 109.47015 * 90.00140 * 1 2 3 31 31 H 1.09000 * 109.47300 * 209.99621 * 1 2 3 32 32 H 1.09000 * 109.47197 * 330.00068 * 1 2 3 33 33 H 1.08003 * 119.96298 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.03450 * 180.27298 * 4 3 2 35 35 H 1.09004 * 109.47000 * 188.15560 * 7 6 5 36 36 H 1.08995 * 109.47519 * 308.15960 * 7 6 5 37 37 H 0.97005 * 119.99747 * 180.02562 * 11 10 8 38 38 H 1.07994 * 120.04548 * 359.96619 * 19 18 16 39 39 H 1.07993 * 119.85024 * 180.27567 * 20 19 18 40 40 H 1.08000 * 119.95559 * 180.02562 * 25 21 20 41 41 H 0.96702 * 114.00191 * 269.97991 * 27 26 25 42 42 H 1.08005 * 120.03781 * 179.97438 * 28 5 4 43 43 H 1.08008 * 119.96028 * 180.02562 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5779 1.2019 0.0058 5 6 4.2739 -0.0001 0.0063 6 7 5.6724 0.0000 0.0127 7 6 6.4058 -1.2529 -0.1836 8 6 6.2056 -1.7360 -1.5971 9 1 5.5931 -1.1668 -2.2806 10 6 6.8045 -2.9045 -2.0176 11 7 7.5509 -3.5973 -1.1854 12 14 6.5559 -3.5036 -3.7693 13 1 5.6796 -2.5518 -4.4983 14 1 7.8706 -3.5906 -4.4541 15 1 5.9191 -4.8450 -3.7480 16 6 6.3454 1.1526 0.1994 17 8 5.7394 2.1772 0.4476 18 6 7.8172 1.1712 0.1030 19 6 8.4773 0.2763 -0.7429 20 6 9.8520 0.3030 -0.8331 21 6 10.5846 1.2058 -0.0795 22 7 12.0612 1.2205 -0.1800 23 8 12.7088 2.0123 0.4812 24 8 12.6288 0.4407 -0.9239 25 6 9.9454 2.0915 0.7649 26 6 8.5619 2.0829 0.8636 27 8 7.9325 2.9530 1.6925 28 6 3.5780 -1.2020 0.0004 29 6 2.1969 -1.1984 -0.0054 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6551 2.1327 -0.0004 34 1 4.1161 2.1382 0.0102 35 1 7.4677 -1.0843 -0.0043 36 1 6.0344 -2.0043 0.5131 37 1 7.9725 -4.4192 -1.4814 38 1 7.9107 -0.4324 -1.3285 39 1 10.3610 -0.3861 -1.4906 40 1 10.5234 2.7926 1.3488 41 1 7.8002 2.6162 2.5893 42 1 4.1162 -2.1383 0.0003 43 1 1.6551 -2.1328 -0.0096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097097234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:36 Heat of formation + Delta-G solvation = 5.073428 kcal Electronic energy + Delta-G solvation = -31558.015725 eV Core-core repulsion = 27152.234006 eV Total energy + Delta-G solvation = -4405.781720 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 356.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.16527 -40.99094 -39.47931 -37.93168 -37.11935 -36.51272 -35.69349 -33.22734 -32.51435 -31.02538 -30.46729 -30.28666 -27.95416 -27.32230 -25.82556 -23.71480 -23.17988 -22.99717 -21.87164 -21.21719 -19.83932 -19.54804 -18.69499 -17.57890 -17.42313 -17.29744 -17.09582 -16.66401 -15.89300 -15.50453 -15.18059 -14.94772 -14.74639 -14.61360 -14.24337 -13.75611 -13.49318 -13.45789 -13.05800 -12.90700 -12.79160 -12.68999 -12.32211 -12.00243 -11.84545 -11.59708 -11.51384 -11.39605 -11.35116 -11.22432 -11.10139 -11.04922 -10.67961 -10.60280 -10.42713 -10.24884 -9.49607 -9.30408 -9.11565 -9.06630 -8.81724 -8.43214 -7.28185 -6.54904 -4.67126 -0.31988 0.86200 1.16926 1.38537 1.75218 1.91425 2.77996 3.03336 3.14505 3.16444 3.23811 3.40093 3.83572 4.04653 4.32801 4.45569 4.51295 4.64163 4.77163 4.89393 5.06238 5.22842 5.25218 5.49499 5.51752 5.61090 5.66137 5.74617 5.78825 5.86698 5.95201 6.02088 6.05278 6.14725 6.32307 6.38006 6.49541 6.56391 6.71959 6.84261 6.87341 7.02064 7.10892 7.38448 7.38898 7.53696 7.63625 7.67767 7.83489 8.32573 8.49010 9.03423 10.49613 Molecular weight = 356.13amu Principal moments of inertia in cm(-1) A = 0.009343 B = 0.003954 C = 0.002887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.279527 B = 7079.591634 C = 9697.929422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.125 4.125 3 C -0.109 4.109 4 C -0.166 4.166 5 C 0.165 3.835 6 N -0.524 5.524 7 C 0.203 3.797 8 C -0.551 4.551 9 H 0.071 0.929 10 C 0.073 3.927 11 N -0.877 5.877 12 Si 0.898 3.102 13 H -0.269 1.269 14 H -0.278 1.278 15 H -0.279 1.279 16 C 0.549 3.451 17 O -0.511 6.511 18 C -0.111 4.111 19 C -0.062 4.062 20 C -0.075 4.075 21 C -0.011 4.011 22 N 0.029 4.971 23 O -0.165 6.165 24 O -0.153 6.153 25 C -0.108 4.108 26 C 0.162 3.838 27 O -0.468 6.468 28 C -0.126 4.126 29 C -0.106 4.106 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.115 0.885 34 H 0.170 0.830 35 H 0.065 0.935 36 H 0.043 0.957 37 H 0.272 0.728 38 H 0.208 0.792 39 H 0.161 0.839 40 H 0.160 0.840 41 H 0.396 0.604 42 H 0.139 0.861 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.022 5.474 4.231 7.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.126 4.126 3 C -0.128 4.128 4 C -0.185 4.185 5 C 0.070 3.930 6 N -0.243 5.243 7 C 0.085 3.915 8 C -0.589 4.589 9 H 0.089 0.911 10 C -0.133 4.133 11 N -0.513 5.513 12 Si 0.724 3.276 13 H -0.193 1.193 14 H -0.203 1.203 15 H -0.204 1.204 16 C 0.338 3.662 17 O -0.390 6.390 18 C -0.115 4.115 19 C -0.080 4.080 20 C -0.094 4.094 21 C -0.094 4.094 22 N 0.548 4.452 23 O -0.380 6.380 24 O -0.370 6.370 25 C -0.127 4.127 26 C 0.114 3.886 27 O -0.278 6.278 28 C -0.146 4.146 29 C -0.125 4.125 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.133 0.867 34 H 0.186 0.814 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.224 0.776 39 H 0.179 0.821 40 H 0.178 0.822 41 H 0.254 0.746 42 H 0.157 0.843 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.861 6.182 3.974 8.301 hybrid contribution 0.427 -0.964 -0.555 1.192 sum -3.434 5.217 3.419 7.120 Atomic orbital electron populations 1.20676 0.91992 1.01937 1.01598 1.19807 0.95518 0.93487 1.03772 1.20858 0.93844 0.96906 1.01150 1.22375 0.94349 0.99625 1.02141 1.17861 0.81932 0.94310 0.98913 1.45838 1.04677 1.10053 1.63775 1.20414 0.93227 0.79362 0.98482 1.21370 1.32795 1.08616 0.96078 0.91097 1.24965 0.94190 0.95716 0.98406 1.69915 1.30231 1.15799 1.35361 0.86405 0.78572 0.79122 0.83457 1.19305 1.20324 1.20428 1.18017 0.86404 0.83513 0.78221 1.90527 1.67596 1.33196 1.47718 1.20834 0.94720 0.96265 0.99701 1.22906 0.93493 0.95662 0.95916 1.21147 0.94222 0.96620 0.97378 1.21146 0.79251 1.03640 1.05332 1.43648 1.03640 0.99074 0.98817 1.94514 1.65759 1.34738 1.42995 1.94556 1.72086 1.35609 1.34792 1.21050 0.94066 0.98651 0.98979 1.17995 0.88130 0.88908 0.93519 1.84848 1.78341 1.39504 1.25096 1.21070 0.93919 0.97668 1.01988 1.20752 0.93494 0.97121 1.01129 0.91922 0.92150 0.92216 0.86699 0.81370 0.91758 0.93871 0.91811 0.77590 0.82140 0.82229 0.74626 0.84284 0.86420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 36.00 0.36 -0.82 16 2 C -0.12 -1.86 5.88 -104.59 -0.62 -2.47 16 3 C -0.11 -1.72 9.69 -39.61 -0.38 -2.10 16 4 C -0.17 -3.01 8.96 -39.39 -0.35 -3.36 16 5 C 0.16 3.16 6.24 -83.71 -0.52 2.64 16 6 N -0.52 -10.13 2.79 -115.91 -0.32 -10.45 16 7 C 0.20 4.15 4.03 -5.19 -0.02 4.13 16 8 C -0.55 -12.23 6.42 -34.44 -0.22 -12.45 16 9 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 10 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.88 -20.81 13.29 55.43 0.74 -20.08 16 12 Si 0.90 18.39 29.54 -169.99 -5.02 13.37 16 13 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 14 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 15 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 16 C 0.55 10.19 7.24 -12.49 -0.09 10.10 16 17 O -0.51 -10.01 12.27 -13.81 -0.17 -10.18 16 18 C -0.11 -1.84 5.45 -104.85 -0.57 -2.41 16 19 C -0.06 -1.02 7.37 -39.19 -0.29 -1.31 16 20 C -0.07 -1.13 9.53 -39.63 -0.38 -1.51 16 21 C -0.01 -0.16 6.85 -79.90 -0.55 -0.71 16 22 N 0.03 0.45 4.45 33.99 0.15 0.60 16 23 O -0.17 -2.59 18.43 -29.46 -0.54 -3.13 16 24 O -0.15 -2.51 18.43 -29.46 -0.54 -3.05 16 25 C -0.11 -1.44 9.48 -39.47 -0.37 -1.82 16 26 C 0.16 2.32 6.69 -38.69 -0.26 2.07 16 27 O -0.47 -6.18 12.01 -37.76 -0.45 -6.64 16 28 C -0.13 -2.31 8.84 -39.39 -0.35 -2.66 16 29 C -0.11 -1.69 9.69 -39.61 -0.38 -2.07 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 32 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 34 H 0.17 3.22 4.74 -55.08 -0.26 2.96 16 35 H 0.07 1.30 4.05 -51.93 -0.21 1.09 16 36 H 0.04 0.95 7.14 -51.93 -0.37 0.58 16 37 H 0.27 6.21 8.31 -40.82 -0.34 5.87 16 38 H 0.21 3.87 4.06 -52.49 -0.21 3.65 16 39 H 0.16 2.30 7.59 -52.49 -0.40 1.91 16 40 H 0.16 1.83 7.59 -52.49 -0.40 1.43 16 41 H 0.40 3.41 9.06 45.56 0.41 3.82 16 42 H 0.14 2.68 6.14 -52.48 -0.32 2.36 16 43 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 LS Contribution 367.28 15.07 5.53 5.53 Total: -1.00 -26.11 367.28 -9.14 -35.25 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -3.41 Total: 11.97 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -5.09 Total: -13.19 kcal Atomic # 7 Polarization: -30.49 SS G_CDS: 0.56 Total: -29.93 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -1.71 Total: -23.00 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.02 Total: 13.37 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -26.11 -9.14 -35.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.322 kcal (2) G-P(sol) polarization free energy of solvation -26.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds