Wall clock time and date at job start Tue Mar 31 2020 05:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86795 * 119.99798 * 2 1 4 4 H 1.48499 * 109.46742 * 269.99542 * 3 2 1 5 5 H 1.48498 * 109.47396 * 29.99342 * 3 2 1 6 6 H 1.48501 * 109.47497 * 149.99553 * 3 2 1 7 7 C 1.38947 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00283 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00358 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99776 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00476 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47275 * 180.02562 * 12 10 9 14 14 C 1.46900 * 111.00271 * 180.02562 * 13 12 10 15 15 H 1.09003 * 110.01408 * 326.38601 * 14 13 12 16 16 C 1.54264 * 110.07505 * 87.80219 * 14 13 12 17 17 C 1.54887 * 104.19748 * 142.92125 * 16 14 13 18 18 C 1.54887 * 102.74742 * 322.05974 * 17 16 14 19 19 C 1.53866 * 110.03721 * 204.99837 * 14 13 12 20 20 H 1.08996 * 110.04075 * 121.32800 * 19 14 13 21 21 C 1.50702 * 110.03199 * 359.94618 * 19 14 13 22 22 C 1.38256 * 119.99963 * 299.73001 * 21 19 14 23 23 C 1.38217 * 120.00087 * 180.32327 * 22 21 19 24 24 C 1.38255 * 120.00132 * 359.92319 * 23 22 21 25 25 C 1.38220 * 119.99697 * 0.07194 * 24 23 22 26 26 C 1.38215 * 120.00248 * 120.00052 * 21 19 14 27 27 C 1.50701 * 119.99815 * 359.72401 * 26 21 19 28 28 F 1.39897 * 109.47381 * 179.97438 * 27 26 21 29 29 F 1.39901 * 109.47225 * 300.00588 * 27 26 21 30 30 F 1.39906 * 109.47115 * 59.99947 * 27 26 21 31 31 H 0.97001 * 120.00662 * 0.02562 * 1 2 3 32 32 H 0.97003 * 120.00049 * 359.97438 * 9 7 2 33 33 H 1.08996 * 109.46940 * 60.00149 * 12 10 9 34 34 H 1.09002 * 109.46860 * 299.99806 * 12 10 9 35 35 H 1.00905 * 110.99792 * 303.95138 * 13 12 10 36 36 H 1.09002 * 110.48863 * 261.60178 * 16 14 13 37 37 H 1.08995 * 110.48676 * 24.23975 * 16 14 13 38 38 H 1.08998 * 110.75926 * 80.37234 * 17 16 14 39 39 H 1.09004 * 110.75803 * 203.74571 * 17 16 14 40 40 H 1.09003 * 110.48689 * 279.26410 * 18 17 16 41 41 H 1.09003 * 110.48929 * 156.61694 * 18 17 16 42 42 H 1.08001 * 120.00211 * 0.27430 * 22 21 19 43 43 H 1.08005 * 120.00081 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.00150 * 180.02562 * 24 23 22 45 45 H 1.08002 * 119.99600 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2439 -4.8629 0.0000 13 7 2.1985 -5.9794 0.0007 14 6 1.4983 -7.2708 -0.0005 15 1 0.5700 -7.1924 0.5655 16 6 1.1987 -7.7094 -1.4488 17 6 1.3973 -9.2454 -1.4294 18 6 2.6139 -9.4208 -0.4870 19 6 2.3981 -8.3589 0.6111 20 1 1.9070 -8.8080 1.4744 21 6 3.7207 -7.7645 1.0215 22 6 4.5345 -7.1694 0.0754 23 6 5.7505 -6.6302 0.4506 24 6 6.1526 -6.6845 1.7723 25 6 5.3390 -7.2794 2.7181 26 6 4.1228 -7.8193 2.3427 27 6 3.2358 -8.4679 3.3740 28 9 3.8529 -8.4018 4.6278 29 9 2.0087 -7.7977 3.4216 30 9 3.0226 -9.8071 3.0298 31 1 -0.4851 0.8400 -0.0004 32 1 0.3534 -2.3907 0.0005 33 1 0.6176 -4.9205 -0.8903 34 1 0.6169 -4.9209 0.8897 35 1 2.8340 -5.9124 -0.7802 36 1 0.1721 -7.4609 -1.7180 37 1 1.8992 -7.2429 -2.1413 38 1 0.5178 -9.7436 -1.0215 39 1 1.6254 -9.6181 -2.4280 40 1 3.5432 -9.2306 -1.0241 41 1 2.6202 -10.4212 -0.0542 42 1 4.2203 -7.1265 -0.9570 43 1 6.3864 -6.1656 -0.2886 44 1 7.1026 -6.2628 2.0656 45 1 5.6532 -7.3222 3.7506 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097103549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:44 Heat of formation + Delta-G solvation = -159.960811 kcal Electronic energy + Delta-G solvation = -33192.886977 eV Core-core repulsion = 28373.925190 eV Total energy + Delta-G solvation = -4818.961787 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.145 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -50.14256 -47.66099 -47.51788 -40.25493 -38.32147 -37.64607 -34.24703 -33.50589 -32.23459 -31.49877 -31.17670 -28.18869 -27.89680 -25.73270 -25.60996 -23.83565 -22.50561 -21.87406 -20.81942 -19.76770 -19.15854 -18.41913 -18.38000 -18.04291 -17.86397 -16.41384 -16.17506 -15.50736 -15.19870 -14.95304 -14.62384 -14.51514 -14.43278 -14.42433 -14.27824 -14.05969 -14.00030 -13.70695 -13.64383 -13.55808 -13.35503 -13.21632 -12.80549 -12.53584 -12.33384 -12.07470 -11.79180 -11.58283 -11.43399 -11.32695 -11.19714 -11.17599 -11.02433 -10.89293 -10.65825 -10.57759 -10.38835 -10.20292 -9.48647 -8.98676 -8.59067 -8.41377 -7.97238 -7.91510 -6.39909 -3.80507 1.15791 1.46991 2.76382 3.18277 3.26834 3.32766 3.66116 3.83369 3.94256 4.08362 4.12282 4.28104 4.44899 4.49177 4.57021 4.71687 4.96431 5.00548 5.11680 5.19880 5.26193 5.27998 5.35660 5.38817 5.44026 5.52278 5.53333 5.62886 5.74561 5.79922 5.83087 5.86593 5.96668 6.03738 6.04307 6.12072 6.15759 6.30920 6.33645 6.50911 6.59402 6.94762 7.27149 7.56531 7.68000 8.08378 8.63721 9.19960 9.57105 10.08662 10.77989 Molecular weight = 356.15amu Principal moments of inertia in cm(-1) A = 0.011644 B = 0.003161 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.176093 B = 8856.815638 C = 9641.913240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.297 4.297 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.443 3.557 11 O -0.581 6.581 12 C 0.048 3.952 13 N -0.656 5.656 14 C 0.090 3.910 15 H 0.085 0.915 16 C -0.156 4.156 17 C -0.121 4.121 18 C -0.117 4.117 19 C -0.064 4.064 20 H 0.083 0.917 21 C 0.019 3.981 22 C -0.091 4.091 23 C -0.074 4.074 24 C -0.128 4.128 25 C -0.075 4.075 26 C -0.189 4.189 27 C 0.508 3.492 28 F -0.182 7.182 29 F -0.173 7.173 30 F -0.182 7.182 31 H 0.271 0.729 32 H 0.392 0.608 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.349 0.651 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.127 0.873 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.630 -20.594 0.463 21.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.228 3.772 11 O -0.465 6.465 12 C -0.084 4.084 13 N -0.289 5.289 14 C -0.021 4.021 15 H 0.103 0.897 16 C -0.195 4.195 17 C -0.159 4.159 18 C -0.154 4.154 19 C -0.083 4.083 20 H 0.101 0.899 21 C 0.018 3.982 22 C -0.109 4.109 23 C -0.092 4.092 24 C -0.146 4.146 25 C -0.093 4.093 26 C -0.190 4.190 27 C 0.454 3.546 28 F -0.163 7.163 29 F -0.154 7.154 30 F -0.163 7.163 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.171 0.829 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.145 0.855 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.378 -20.397 1.185 21.127 hybrid contribution -0.877 0.990 -0.605 1.454 sum 4.501 -19.407 0.580 19.931 Atomic orbital electron populations 1.69611 1.05928 1.28087 1.50789 1.25243 0.95608 0.99663 0.97433 0.85876 0.79268 0.80936 0.78317 1.20475 1.20942 1.19437 1.19680 0.93306 0.82262 1.47457 0.88000 1.41865 1.09169 1.04620 1.64557 1.19810 0.88416 0.84683 0.84291 1.90513 1.13649 1.87069 1.55230 1.21718 0.94515 0.91150 1.01035 1.60530 1.17960 0.99365 1.51033 1.22202 0.96016 0.89350 0.94491 0.89685 1.23191 1.02056 0.96461 0.97775 1.22422 0.98153 0.95845 0.99437 1.22499 0.98845 0.98241 0.95837 1.21155 0.92672 0.95261 0.99186 0.89883 1.19099 0.93953 0.94041 0.91090 1.20701 0.93559 0.97592 0.99063 1.21262 0.95930 0.95740 0.96294 1.20997 1.00210 1.00355 0.93087 1.20830 0.92483 0.95879 1.00120 1.19662 0.97428 1.08575 0.93334 1.18373 0.79341 0.76299 0.80546 1.93135 1.82719 1.96173 1.44314 1.93228 1.45550 1.80195 1.96434 1.93172 1.95171 1.35996 1.91979 0.91924 0.77534 0.93973 0.89747 0.82896 0.91309 0.91291 0.91320 0.91445 0.90944 0.91240 0.85903 0.85591 0.85543 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.72 13.05 55.50 0.72 -23.99 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 9 N -0.57 -14.35 5.29 -10.96 -0.06 -14.41 16 10 C 0.44 10.35 7.82 -10.99 -0.09 10.27 16 11 O -0.58 -15.35 15.78 5.55 0.09 -15.27 16 12 C 0.05 0.85 6.00 -4.98 -0.03 0.82 16 13 N -0.66 -10.20 3.89 -106.82 -0.42 -10.62 16 14 C 0.09 1.11 3.13 -66.60 -0.21 0.90 16 15 H 0.08 1.06 7.81 -51.93 -0.41 0.66 16 16 C -0.16 -1.57 6.46 -25.07 -0.16 -1.74 16 17 C -0.12 -1.02 6.91 -24.74 -0.17 -1.20 16 18 C -0.12 -1.09 6.26 -25.07 -0.16 -1.25 16 19 C -0.06 -0.74 2.49 -90.66 -0.23 -0.97 16 20 H 0.08 1.01 4.79 -51.93 -0.25 0.76 16 21 C 0.02 0.25 4.13 -104.62 -0.43 -0.18 16 22 C -0.09 -1.17 6.62 -39.58 -0.26 -1.43 16 23 C -0.07 -0.94 10.05 -39.58 -0.40 -1.34 16 24 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 25 C -0.07 -0.97 9.43 -39.58 -0.37 -1.34 16 26 C -0.19 -2.59 5.37 -104.62 -0.56 -3.15 16 27 C 0.51 6.83 2.78 36.01 0.10 6.93 16 28 F -0.18 -2.41 15.97 2.25 0.04 -2.37 16 29 F -0.17 -2.55 15.88 2.25 0.04 -2.51 16 30 F -0.18 -2.28 15.78 2.25 0.04 -2.24 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 35 H 0.35 5.49 5.44 -39.29 -0.21 5.28 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.72 7.56 -51.93 -0.39 0.33 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.66 6.84 -51.93 -0.36 0.30 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.12 1.43 6.63 -52.49 -0.35 1.08 16 43 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 44 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 45 H 0.13 1.46 7.16 -52.49 -0.38 1.08 16 LS Contribution 373.66 15.07 5.63 5.63 Total: -1.00 -30.95 373.66 -8.10 -39.05 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -5.55 Total: 14.24 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -3.60 Total: -3.63 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.25 Total: -49.02 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.09 Total: -15.27 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 0.11 Total: -7.12 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.95 -8.10 -39.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097103549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.911 kcal (2) G-P(sol) polarization free energy of solvation -30.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds