Wall clock time and date at job start Tue Mar 31 2020 05:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86794 * 120.00175 * 2 1 4 4 H 1.48502 * 109.47005 * 89.99781 * 3 2 1 5 5 H 1.48497 * 109.47434 * 209.99688 * 3 2 1 6 6 H 1.48504 * 109.46970 * 329.99959 * 3 2 1 7 7 C 1.38950 * 119.99842 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00161 * 0.02562 * 7 2 1 9 9 N 1.37098 * 119.99991 * 180.02562 * 7 2 1 10 10 C 1.34780 * 120.00290 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99473 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00081 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.46872 * 179.97438 * 12 10 9 14 14 C 1.46901 * 110.99746 * 180.02562 * 13 12 10 15 15 H 1.08997 * 110.02096 * 50.75918 * 14 13 12 16 16 C 1.53885 * 110.03236 * 289.36630 * 14 13 12 17 17 C 1.54264 * 106.59488 * 240.71811 * 16 14 13 18 18 C 1.54888 * 104.20232 * 23.61077 * 17 16 14 19 19 C 1.54265 * 110.03101 * 172.20241 * 14 13 12 20 20 H 1.09001 * 110.48165 * 214.35144 * 19 14 13 21 21 C 1.50695 * 110.48721 * 336.99164 * 19 14 13 22 22 C 1.38253 * 120.00037 * 67.37316 * 21 19 14 23 23 C 1.38211 * 120.00295 * 180.02562 * 22 21 19 24 24 C 1.38256 * 120.00304 * 359.95642 * 23 22 21 25 25 C 1.38217 * 119.99421 * 0.02562 * 24 23 22 26 26 C 1.38220 * 120.00400 * 247.10159 * 21 19 14 27 27 C 1.50698 * 119.99582 * 359.97438 * 26 21 19 28 28 F 1.39897 * 109.46983 * 179.97438 * 27 26 21 29 29 F 1.39901 * 109.47319 * 300.00237 * 27 26 21 30 30 F 1.39905 * 109.46952 * 60.00242 * 27 26 21 31 31 H 0.97000 * 119.99719 * 0.02562 * 1 2 3 32 32 H 0.97000 * 119.99787 * 359.97438 * 9 7 2 33 33 H 1.08993 * 109.47196 * 299.99800 * 12 10 9 34 34 H 1.08997 * 109.47129 * 60.00094 * 12 10 9 35 35 H 1.00897 * 110.99806 * 303.95419 * 13 12 10 36 36 H 1.08998 * 110.02867 * 359.97438 * 16 14 13 37 37 H 1.08998 * 110.03345 * 121.43152 * 16 14 13 38 38 H 1.09002 * 110.48269 * 142.28474 * 17 16 14 39 39 H 1.09002 * 110.48425 * 264.92806 * 17 16 14 40 40 H 1.08999 * 110.75640 * 80.36608 * 18 17 16 41 41 H 1.08995 * 110.75788 * 203.56228 * 18 17 16 42 42 H 1.08004 * 119.99821 * 359.97438 * 22 21 19 43 43 H 1.08007 * 120.00001 * 179.97438 * 23 22 21 44 44 H 1.07997 * 120.00665 * 180.02562 * 24 23 22 45 45 H 1.07999 * 119.99784 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0463 1.4001 5 1 3.5457 1.4401 -0.6999 6 1 1.4456 2.6526 -0.7001 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3799 -1.2034 0.0011 10 6 4.0538 -2.3706 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0011 13 7 6.0504 -3.7556 0.0017 14 6 7.5189 -3.7948 0.0023 15 1 7.9088 -3.1569 0.7954 16 6 8.0592 -3.3300 -1.3615 17 6 8.8584 -4.5133 -1.9453 18 6 8.2653 -5.7577 -1.2390 19 6 8.0087 -5.2443 0.1996 20 1 8.9310 -5.2595 0.7803 21 6 6.9459 -6.0730 0.8737 22 6 5.7679 -6.3598 0.2091 23 6 4.7929 -7.1195 0.8275 24 6 4.9958 -7.5935 2.1104 25 6 6.1735 -7.3071 2.7746 26 6 7.1509 -6.5513 2.1542 27 6 8.4377 -6.2443 2.8760 28 9 8.4114 -6.8309 4.1458 29 9 9.5155 -6.7579 2.1467 30 9 8.5804 -4.8586 3.0058 31 1 -0.4850 0.8401 -0.0004 32 1 3.8648 -0.3634 0.0007 33 1 5.9241 -1.8568 -0.8889 34 1 5.9241 -1.8568 0.8910 35 1 5.6748 -4.2715 0.7833 36 1 7.2317 -3.0759 -2.0239 37 1 8.7120 -2.4671 -1.2301 38 1 8.7096 -4.5794 -3.0231 39 1 9.9180 -4.4105 -1.7110 40 1 7.3321 -6.0625 -1.7126 41 1 8.9820 -6.5789 -1.2370 42 1 5.6093 -5.9895 -0.7930 43 1 3.8725 -7.3432 0.3085 44 1 4.2341 -8.1874 2.5934 45 1 6.3323 -7.6776 3.7765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097103552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:57 Heat of formation + Delta-G solvation = -153.280308 kcal Electronic energy + Delta-G solvation = -33130.586818 eV Core-core repulsion = 28311.914720 eV Total energy + Delta-G solvation = -4818.672099 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.34224 -47.84988 -47.73798 -40.40673 -38.49873 -37.75838 -34.27723 -33.54590 -32.42109 -31.77093 -31.62334 -28.24743 -27.92566 -25.93950 -25.81823 -23.78372 -22.71701 -21.96438 -20.57316 -19.51822 -19.33625 -18.61660 -18.59040 -18.29881 -18.20267 -16.56749 -16.10047 -15.82826 -15.43866 -15.08355 -14.89376 -14.74907 -14.65318 -14.47980 -14.44532 -14.19867 -14.03003 -13.91550 -13.80982 -13.68536 -13.28767 -13.20051 -12.76679 -12.68065 -12.58665 -12.15209 -12.01440 -11.83224 -11.51216 -11.31474 -11.19560 -11.15712 -11.11430 -10.90587 -10.81293 -10.59465 -10.52084 -9.97855 -9.56706 -9.19305 -8.83131 -8.53870 -8.19191 -8.12220 -6.31387 -3.82494 0.89918 1.23848 2.55233 3.02662 3.06801 3.14964 3.46583 3.61288 3.75362 3.91390 4.08211 4.11570 4.28808 4.38462 4.52426 4.58642 4.82117 4.92452 5.00919 5.06003 5.21500 5.22784 5.30340 5.37726 5.42136 5.44137 5.57848 5.63759 5.66038 5.68802 5.81493 5.88730 5.90382 5.92473 5.96221 6.03719 6.06705 6.17316 6.31352 6.42223 6.47125 6.78768 7.14929 7.58200 7.59815 8.14394 8.59996 8.94933 9.42769 9.83204 10.81801 Molecular weight = 356.15amu Principal moments of inertia in cm(-1) A = 0.012523 B = 0.003097 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.274905 B = 9038.851130 C = 9690.935804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.277 1.277 7 C -0.304 4.304 8 H 0.119 0.881 9 N -0.591 5.591 10 C 0.452 3.548 11 O -0.564 6.564 12 C 0.043 3.957 13 N -0.660 5.660 14 C 0.090 3.910 15 H 0.043 0.957 16 C -0.119 4.119 17 C -0.120 4.120 18 C -0.109 4.109 19 C -0.064 4.064 20 H 0.086 0.914 21 C -0.034 4.034 22 C -0.080 4.080 23 C -0.079 4.079 24 C -0.123 4.123 25 C -0.082 4.082 26 C -0.190 4.190 27 C 0.508 3.492 28 F -0.180 7.180 29 F -0.177 7.177 30 F -0.177 7.177 31 H 0.273 0.727 32 H 0.370 0.630 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.352 0.648 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.151 0.849 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.866 -12.171 1.847 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.202 1.202 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.237 3.763 11 O -0.445 6.445 12 C -0.089 4.089 13 N -0.296 5.296 14 C -0.020 4.020 15 H 0.061 0.939 16 C -0.157 4.157 17 C -0.158 4.158 18 C -0.146 4.146 19 C -0.083 4.083 20 H 0.104 0.896 21 C -0.035 4.035 22 C -0.098 4.098 23 C -0.098 4.098 24 C -0.141 4.141 25 C -0.100 4.100 26 C -0.191 4.191 27 C 0.454 3.546 28 F -0.161 7.161 29 F -0.159 7.159 30 F -0.158 7.158 31 H 0.084 0.916 32 H 0.203 0.797 33 H 0.106 0.894 34 H 0.061 0.939 35 H 0.175 0.825 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.168 0.832 43 H 0.151 0.849 44 H 0.149 0.851 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 19.219 -12.813 1.205 23.130 hybrid contribution 0.906 1.919 1.217 2.446 sum 20.126 -10.894 2.422 23.013 Atomic orbital electron populations 1.69622 1.05631 1.27460 1.49515 1.25028 0.95479 0.97944 0.97689 0.86683 0.79812 0.84108 0.78862 1.19692 1.19483 1.20185 1.19418 0.79255 0.96576 1.47988 0.86304 1.42212 1.07514 1.06188 1.67186 1.19698 0.88161 0.84557 0.83838 1.90542 1.69437 1.30875 1.53683 1.21751 0.94967 0.90945 1.01266 1.60599 1.05347 1.12356 1.51305 1.22081 0.88739 0.94117 0.97093 0.93894 1.22273 0.99713 0.97634 0.96035 1.22299 0.99013 0.94575 0.99908 1.22555 1.01522 0.97405 0.93140 1.21332 0.95970 0.93613 0.97368 0.89610 1.19460 0.96301 0.95772 0.91941 1.21276 0.91476 0.95337 1.01731 1.21500 0.98930 0.94618 0.94704 1.21167 0.96877 1.00773 0.95261 1.20890 0.92898 0.96358 0.99871 1.19803 0.94727 1.07706 0.96880 1.18358 0.85023 0.74348 0.76842 1.93147 1.96707 1.84188 1.42079 1.93181 1.58604 1.86902 1.77188 1.93218 1.96342 1.30425 1.95837 0.91646 0.79738 0.89400 0.93934 0.82475 0.90049 0.91966 0.91348 0.91903 0.90169 0.91563 0.83181 0.84854 0.85125 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.68 13.96 55.50 0.77 -24.91 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.38 27.74 -169.99 -4.71 14.66 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.52 10.16 -14.93 -0.15 -8.67 16 8 H 0.12 3.80 7.39 -52.48 -0.39 3.41 16 9 N -0.59 -13.98 5.09 -10.96 -0.06 -14.04 16 10 C 0.45 10.06 7.82 -10.99 -0.09 9.97 16 11 O -0.56 -14.50 15.78 5.55 0.09 -14.41 16 12 C 0.04 0.72 5.92 -4.98 -0.03 0.69 16 13 N -0.66 -9.94 4.22 -106.81 -0.45 -10.39 16 14 C 0.09 1.10 3.15 -66.59 -0.21 0.89 16 15 H 0.04 0.54 8.10 -51.93 -0.42 0.12 16 16 C -0.12 -1.27 6.01 -25.61 -0.15 -1.42 16 17 C -0.12 -1.10 6.83 -25.07 -0.17 -1.27 16 18 C -0.11 -1.08 6.23 -24.74 -0.15 -1.23 16 19 C -0.06 -0.72 2.37 -90.11 -0.21 -0.94 16 20 H 0.09 0.96 4.93 -51.93 -0.26 0.71 16 21 C -0.03 -0.42 3.93 -104.63 -0.41 -0.83 16 22 C -0.08 -1.01 6.55 -39.59 -0.26 -1.27 16 23 C -0.08 -0.95 10.05 -39.58 -0.40 -1.35 16 24 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 25 C -0.08 -0.91 9.43 -39.58 -0.37 -1.28 16 26 C -0.19 -2.28 5.37 -104.62 -0.56 -2.84 16 27 C 0.51 5.99 2.78 36.00 0.10 6.09 16 28 F -0.18 -2.07 15.97 2.25 0.04 -2.03 16 29 F -0.18 -2.04 15.63 2.25 0.04 -2.01 16 30 F -0.18 -2.23 16.04 2.25 0.04 -2.19 16 31 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.37 7.75 5.76 -40.82 -0.24 7.51 16 33 H 0.09 1.30 7.03 -51.93 -0.37 0.93 16 34 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.35 5.80 5.47 -39.29 -0.22 5.59 16 36 H 0.08 0.97 7.14 -51.93 -0.37 0.60 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.83 6.36 -51.93 -0.33 0.50 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.15 2.00 6.38 -52.48 -0.34 1.67 16 43 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 44 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.13 1.24 7.16 -52.49 -0.38 0.86 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -31.00 368.15 -7.69 -38.69 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -5.42 Total: 15.25 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -3.57 Total: -4.16 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.27 Total: -49.34 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.09 Total: -14.41 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 0.11 Total: -6.23 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.66 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.00 -7.69 -38.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097103552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.592 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds