Wall clock time and date at job start Tue Mar 31 2020 05:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00202 * 2 1 4 4 C 1.52997 * 109.47329 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47873 * 305.00503 * 4 3 2 6 6 C 1.53009 * 109.46938 * 65.00412 * 4 3 2 7 7 C 1.50700 * 109.47409 * 184.99993 * 4 3 2 8 8 N 1.28875 * 124.76391 * 120.00035 * 7 4 3 9 9 C 1.32490 * 117.11045 * 180.02562 * 8 7 4 10 10 C 1.48379 * 122.94851 * 179.97438 * 9 8 7 11 11 C 1.35413 * 126.62803 * 174.54618 * 10 9 8 12 12 N 1.36817 * 109.72536 * 179.83103 * 11 10 9 13 13 C 1.46502 * 124.95174 * 180.14741 * 12 11 10 14 14 C 1.50703 * 109.46860 * 265.33901 * 13 12 11 15 15 H 1.07997 * 119.99823 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00077 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99906 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00149 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46841 * 60.00300 * 18 16 14 20 20 H 1.48505 * 109.47098 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47279 * 300.00465 * 18 16 14 22 22 C 1.37753 * 110.09336 * 0.43722 * 12 11 10 23 23 C 1.39174 * 133.31211 * 179.75917 * 22 12 11 24 24 C 1.37751 * 119.78612 * 179.97438 * 23 22 12 25 25 C 1.38801 * 120.64154 * 0.02562 * 24 23 22 26 26 C 1.36678 * 120.49489 * 359.97438 * 25 24 23 27 27 C 1.39450 * 119.78435 * 0.02562 * 26 25 24 28 28 C 1.34795 * 114.09401 * 0.02562 * 9 8 7 29 29 S 1.70925 * 124.76592 * 300.36305 * 7 4 3 30 30 H 1.09006 * 109.46791 * 59.99542 * 1 2 3 31 31 H 1.08995 * 109.46754 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47201 * 299.99919 * 1 2 3 33 33 H 1.09011 * 109.47047 * 60.00025 * 3 2 1 34 34 H 1.09002 * 109.47660 * 300.00242 * 3 2 1 35 35 H 1.09006 * 109.46724 * 59.99495 * 6 4 3 36 36 H 1.09001 * 109.46906 * 179.97438 * 6 4 3 37 37 H 1.08993 * 109.46766 * 300.00287 * 6 4 3 38 38 H 1.08000 * 125.13340 * 359.96807 * 11 10 9 39 39 H 1.08998 * 109.46827 * 25.33632 * 13 12 11 40 40 H 1.08993 * 109.47243 * 145.33866 * 13 12 11 41 41 H 0.96999 * 120.00124 * 179.97438 * 17 16 14 42 42 H 1.08006 * 120.10727 * 0.02677 * 23 22 12 43 43 H 1.07996 * 119.67317 * 179.97438 * 24 23 22 44 44 H 1.08004 * 119.75603 * 179.97438 * 25 24 23 45 45 H 1.07992 * 120.11267 * 180.02562 * 26 25 24 46 46 H 1.08000 * 126.05120 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8509 0.5684 0.8426 6 6 3.9963 0.5364 -1.3065 7 6 4.1480 2.5559 0.1245 8 7 4.9237 2.9304 1.0831 9 6 5.3775 4.1745 1.0416 10 6 6.2770 4.7404 2.0771 11 6 6.8654 5.9598 2.0572 12 7 7.6199 6.1270 3.1862 13 6 8.3972 7.3269 3.5062 14 6 9.8202 7.1410 3.0461 15 1 10.1160 6.2210 2.5640 16 6 10.7444 8.1455 3.2406 17 7 10.3842 9.2656 3.8282 18 14 12.5083 7.9149 2.6710 19 1 12.5289 7.6878 1.2036 20 1 13.2962 9.1312 2.9953 21 1 13.1023 6.7422 3.3617 22 6 7.5474 5.0000 3.9750 23 6 8.1146 4.6521 5.1974 24 6 7.8471 3.4188 5.7496 25 6 7.0167 2.5172 5.0985 26 6 6.4496 2.8393 3.8973 27 6 6.7073 4.0826 3.3208 28 6 4.9493 4.8812 -0.0234 29 16 3.9045 3.8357 -0.9821 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.6886 1.8464 0.8901 34 1 1.6887 1.8464 -0.8899 35 1 3.6808 1.1527 -2.1485 36 1 5.0829 0.4508 -1.3063 37 1 3.5532 -0.4554 -1.3961 38 1 6.7540 6.6909 1.2701 39 1 7.9611 8.1879 2.9998 40 1 8.3824 7.4928 4.5833 41 1 11.0344 9.9722 3.9654 42 1 8.7617 5.3472 5.7117 43 1 8.2886 3.1506 6.6980 44 1 6.8170 1.5540 5.5443 45 1 5.8041 2.1332 3.3962 46 1 5.1994 5.9077 -0.2473 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129550462.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:56 Heat of formation + Delta-G solvation = 45.759755 kcal Electronic energy + Delta-G solvation = -27962.472808 eV Core-core repulsion = 24137.041345 eV Total energy + Delta-G solvation = -3825.431463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 356.130 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.76778 -39.54803 -38.33123 -36.48297 -34.88316 -33.50567 -31.88481 -29.90671 -29.57583 -27.99708 -27.69729 -26.67275 -26.16929 -24.85747 -23.26843 -22.15402 -21.63079 -20.72557 -20.17280 -18.80290 -17.55251 -16.80654 -16.72011 -16.25409 -16.05371 -15.72098 -15.52298 -15.01401 -14.90152 -14.54620 -14.44516 -13.86892 -13.77358 -13.46299 -13.25240 -13.11839 -12.91273 -12.89379 -12.39630 -12.17048 -12.03943 -11.80306 -11.74392 -11.58093 -11.48386 -11.30440 -11.17698 -10.99766 -10.85763 -10.82912 -10.41506 -10.13684 -10.02412 -9.91310 -9.50102 -9.31280 -9.28013 -8.72154 -8.47685 -7.56258 -6.82350 -6.30965 -4.42442 0.73269 1.42875 1.70342 1.82689 2.19793 2.66309 3.18330 3.22596 3.26140 3.26665 3.65047 3.81509 4.19395 4.24815 4.52304 4.56737 4.68585 4.88529 4.99741 5.00643 5.02053 5.11210 5.19741 5.30456 5.32670 5.35692 5.39790 5.47234 5.52416 5.62260 5.65125 5.79903 5.81625 5.98210 6.06171 6.11107 6.22430 6.35910 6.46790 6.63446 6.72901 6.76456 6.90397 7.05708 7.18758 7.32318 7.48515 7.59302 7.79707 7.89774 7.98352 8.05409 8.65195 9.25654 10.73649 Molecular weight = 356.13amu Principal moments of inertia in cm(-1) A = 0.014400 B = 0.002443 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.987270 B =11457.231522 C =12573.657928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.069 3.931 4 C -0.012 4.012 5 H 0.109 0.891 6 C -0.142 4.142 7 C 0.055 3.945 8 N -0.453 5.453 9 C 0.180 3.820 10 C -0.158 4.158 11 C 0.108 3.892 12 N -0.444 5.444 13 C 0.235 3.765 14 C -0.543 4.543 15 H 0.065 0.935 16 C 0.067 3.933 17 N -0.890 5.890 18 Si 0.905 3.095 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.102 3.898 23 C -0.110 4.110 24 C -0.116 4.116 25 C -0.158 4.158 26 C -0.070 4.070 27 C -0.084 4.084 28 C -0.276 4.276 29 S 0.096 5.904 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.164 0.836 39 H 0.049 0.951 40 H 0.047 0.953 41 H 0.269 0.731 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.112 0.888 45 H 0.122 0.878 46 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.027 -13.527 -7.816 23.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C -0.009 4.009 4 C -0.034 4.034 5 H 0.128 0.872 6 C -0.201 4.201 7 C -0.225 4.225 8 N -0.167 5.167 9 C 0.051 3.949 10 C -0.169 4.169 11 C -0.027 4.027 12 N -0.119 5.119 13 C 0.117 3.883 14 C -0.581 4.581 15 H 0.083 0.917 16 C -0.137 4.137 17 N -0.528 5.528 18 Si 0.732 3.268 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.198 1.198 22 C -0.006 4.006 23 C -0.131 4.131 24 C -0.136 4.136 25 C -0.177 4.177 26 C -0.088 4.088 27 C -0.089 4.089 28 C -0.415 4.415 29 S 0.350 5.650 30 H 0.060 0.940 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.182 0.818 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.140 0.860 43 H 0.134 0.866 44 H 0.130 0.870 45 H 0.140 0.860 46 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -17.076 -13.411 -8.161 23.196 hybrid contribution 1.501 0.869 0.331 1.766 sum -15.575 -12.542 -7.830 21.475 Atomic orbital electron populations 1.22758 0.80711 1.02870 1.00155 1.87841 1.19850 1.27341 1.95458 1.22567 0.92380 0.85011 1.00903 1.19624 0.92583 0.89374 1.01847 0.87242 1.21861 1.01979 1.01424 0.94789 1.26597 1.00840 1.00382 0.94700 1.66125 1.10705 1.15745 1.24105 1.17973 0.96318 0.87282 0.93348 1.17713 1.07672 0.95506 0.95974 1.21738 0.93572 0.96677 0.90711 1.44828 1.37247 1.14599 1.15241 1.19767 0.90580 0.79678 0.98294 1.21313 0.93337 1.02687 1.40776 0.91682 1.24940 0.99519 0.94680 0.94565 1.69908 1.35621 1.05712 1.41535 0.86431 0.83228 0.77768 0.79411 1.19918 1.20933 1.19849 1.18280 1.00098 0.87704 0.94490 1.20153 1.01438 0.97509 0.93956 1.20681 0.99678 0.93466 0.99773 1.20511 1.01020 0.99608 0.96534 1.20228 0.99085 0.94775 0.94742 1.18851 1.00565 0.94763 0.94722 1.26764 1.08473 1.05569 1.00666 1.83621 1.46760 1.05321 1.29306 0.93984 0.89446 0.93921 0.92588 0.92770 0.92400 0.91809 0.90566 0.81832 0.93340 0.93483 0.92152 0.86011 0.86563 0.86983 0.86050 0.80692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.60 10.24 -35.23 -0.36 -3.96 16 3 C 0.07 0.63 5.17 37.16 0.19 0.82 16 4 C -0.01 -0.13 3.05 -91.77 -0.28 -0.41 16 5 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 6 C -0.14 -1.26 8.99 37.16 0.33 -0.92 16 7 C 0.05 0.70 6.02 -13.52 -0.08 0.62 16 8 N -0.45 -7.24 9.73 -8.41 -0.08 -7.33 16 9 C 0.18 3.01 6.71 -84.63 -0.57 2.44 16 10 C -0.16 -3.01 6.27 -103.12 -0.65 -3.66 16 11 C 0.11 2.07 10.85 -16.33 -0.18 1.89 16 12 N -0.44 -9.66 2.76 -115.39 -0.32 -9.98 16 13 C 0.23 5.67 5.74 -5.19 -0.03 5.64 16 14 C -0.54 -14.38 9.39 -34.44 -0.32 -14.70 16 15 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 16 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -24.45 13.29 55.43 0.74 -23.72 16 18 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 22 C 0.10 2.17 6.80 -83.99 -0.57 1.60 16 23 C -0.11 -2.18 9.99 -39.41 -0.39 -2.57 16 24 C -0.12 -1.97 10.01 -39.55 -0.40 -2.37 16 25 C -0.16 -2.59 9.98 -39.94 -0.40 -2.99 16 26 C -0.07 -1.26 9.89 -39.69 -0.39 -1.66 16 27 C -0.08 -1.70 6.31 -104.97 -0.66 -2.36 16 28 C -0.28 -3.83 10.86 29.51 0.32 -3.51 16 29 S 0.10 1.08 22.62 -107.50 -2.43 -1.35 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 34 H 0.05 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.06 0.46 7.93 -51.93 -0.41 0.05 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.62 7.82 -51.93 -0.41 0.21 16 38 H 0.16 2.63 7.74 -52.49 -0.41 2.23 16 39 H 0.05 1.18 8.12 -51.93 -0.42 0.76 16 40 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.12 2.41 8.06 -52.48 -0.42 1.99 16 43 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 44 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 45 H 0.12 2.09 7.44 -52.49 -0.39 1.69 16 46 H 0.18 2.08 7.72 -52.49 -0.41 1.68 16 LS Contribution 404.12 15.07 6.09 6.09 Total: -1.00 -29.85 404.12 -11.08 -40.92 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.63 Total: 2.75 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -3.06 Total: -19.14 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.34 Total: -41.02 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: -0.36 Total: -3.96 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.43 Total: -1.35 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -29.85 -11.08 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129550462.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.685 kcal (2) G-P(sol) polarization free energy of solvation -29.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds