Wall clock time and date at job start Tue Mar 31 2020 06:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46666 * 2 1 4 4 C 1.50700 * 109.46956 * 240.00242 * 2 1 3 5 5 H 1.08001 * 120.00011 * 239.99502 * 4 2 1 6 6 C 1.37879 * 120.00053 * 59.99968 * 4 2 1 7 7 N 1.31520 * 119.99754 * 179.72067 * 6 4 2 8 8 Si 1.86796 * 120.00212 * 359.97438 * 6 4 2 9 9 H 1.48493 * 109.47215 * 269.72523 * 8 6 4 10 10 H 1.48501 * 109.47224 * 29.72571 * 8 6 4 11 11 H 1.48503 * 109.47236 * 149.72236 * 8 6 4 12 12 N 1.46493 * 109.47105 * 120.00092 * 2 1 3 13 13 C 1.46505 * 120.00213 * 60.00023 * 12 2 1 14 14 C 1.34773 * 119.99904 * 240.00255 * 12 2 1 15 15 O 1.21362 * 120.00415 * 356.42085 * 14 12 2 16 16 C 1.49335 * 120.00067 * 176.42700 * 14 12 2 17 17 O 1.21398 * 119.99819 * 5.91591 * 16 14 12 18 18 N 1.34778 * 119.99983 * 185.91891 * 16 14 12 19 19 C 1.40481 * 119.99925 * 179.97438 * 18 16 14 20 20 C 1.40336 * 126.11344 * 359.69159 * 19 18 16 21 21 N 1.30823 * 108.21172 * 179.85394 * 20 19 18 22 22 N 1.40059 * 108.36042 * 0.40228 * 21 20 19 23 23 C 1.46502 * 125.99163 * 179.71749 * 22 21 20 24 24 C 1.50693 * 109.47420 * 305.03148 * 23 22 21 25 25 C 1.38241 * 119.99859 * 269.72601 * 24 23 22 26 26 C 1.38235 * 120.00214 * 179.76590 * 25 24 23 27 27 C 1.38239 * 119.99749 * 0.50774 * 26 25 24 28 28 C 1.38232 * 119.99907 * 359.74462 * 27 26 25 29 29 C 1.38231 * 120.00470 * 89.99816 * 24 23 22 30 30 C 1.35222 * 108.01307 * 359.74296 * 22 21 20 31 31 H 1.08996 * 109.47134 * 299.99768 * 1 2 3 32 32 H 1.08998 * 109.47087 * 60.00063 * 1 2 3 33 33 H 1.09001 * 109.47072 * 179.97438 * 1 2 3 34 34 H 0.96995 * 119.99558 * 180.27337 * 7 6 4 35 35 H 1.09001 * 109.46649 * 95.98012 * 13 12 2 36 36 H 1.08997 * 109.47403 * 215.98488 * 13 12 2 37 37 H 1.09002 * 109.46902 * 335.98488 * 13 12 2 38 38 H 0.97004 * 120.00095 * 0.02562 * 18 16 14 39 39 H 1.08000 * 125.89747 * 359.97438 * 20 19 18 40 40 H 1.09000 * 109.46873 * 65.03051 * 23 22 21 41 41 H 1.08998 * 109.47033 * 185.02355 * 23 22 21 42 42 H 1.08005 * 119.99785 * 0.02562 * 25 24 23 43 43 H 1.08001 * 120.00137 * 180.23114 * 26 25 24 44 44 H 1.07996 * 120.00176 * 179.72920 * 27 26 25 45 45 H 1.08000 * 119.99971 * 179.97438 * 28 27 26 46 46 H 1.07996 * 119.99927 * 0.02562 * 29 24 23 47 47 H 1.07993 * 126.17975 * 180.02562 * 30 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 2.1422 -0.8560 -3.5566 8 14 0.6247 1.2791 -2.6541 9 1 -0.8024 0.8722 -2.7065 10 1 0.8420 2.1734 -1.4887 11 1 0.9805 1.9988 -3.9034 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.1400 1.1057 1.8597 16 6 3.2250 -0.7142 3.3415 17 8 2.9696 -1.8881 3.5164 18 7 3.8982 -0.0234 4.2828 19 6 4.3040 -0.6617 5.4666 20 6 4.0728 -2.0043 5.8036 21 7 4.6019 -2.2278 6.9790 22 7 5.1797 -1.0367 7.4364 23 6 5.8726 -0.8510 8.7138 24 6 4.9680 -1.2744 9.8422 25 6 4.1256 -0.3528 10.4356 26 6 3.2923 -0.7421 11.4676 27 6 3.3088 -2.0507 11.9131 28 6 4.1549 -2.9709 11.3231 29 6 4.9845 -2.5828 10.2877 30 6 4.9853 -0.0882 6.4925 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.9111 -0.5223 -4.4375 35 1 2.4674 -2.7351 1.0656 36 1 1.5197 -2.2598 2.4954 37 1 0.7429 -2.3282 0.8953 38 1 4.1020 0.9146 4.1432 39 1 3.5502 -2.7286 5.1964 40 1 6.7783 -1.4573 8.7272 41 1 6.1368 0.1995 8.8344 42 1 4.1156 0.6705 10.0902 43 1 2.6315 -0.0230 11.9287 44 1 2.6610 -2.3539 12.7222 45 1 4.1682 -3.9931 11.6715 46 1 5.6460 -3.3017 9.8273 47 1 5.3129 0.9396 6.5445 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132363562.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:31 Heat of formation + Delta-G solvation = 70.529195 kcal Electronic energy + Delta-G solvation = -30362.826264 eV Core-core repulsion = 26128.008765 eV Total energy + Delta-G solvation = -4234.817499 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 356.164 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.59789 -40.28466 -39.50850 -38.14138 -36.04864 -34.96740 -33.89863 -32.67452 -31.30999 -31.05647 -30.44885 -29.33480 -26.67457 -26.26710 -25.24427 -24.45208 -23.01808 -22.48625 -21.64674 -21.25245 -20.21343 -19.02816 -17.77868 -17.34044 -17.05105 -16.69897 -16.39816 -16.06821 -15.76114 -15.66386 -15.34936 -15.04479 -14.87978 -14.44250 -14.25625 -13.82307 -13.74165 -13.35315 -13.29600 -13.01499 -12.97969 -12.94247 -12.76472 -12.35988 -12.26024 -11.88821 -11.80633 -11.65417 -11.43921 -11.21829 -10.89557 -10.88384 -10.73579 -10.61681 -10.17873 -9.66844 -9.56927 -9.38720 -9.30708 -9.27550 -8.85848 -8.67146 -7.95172 -7.76898 -6.17149 -4.18857 0.78618 1.02096 1.43643 1.92202 2.22497 2.76716 2.80978 3.21144 3.34426 3.35545 3.43737 3.67228 3.95903 4.09975 4.27636 4.31659 4.55261 4.59437 4.62074 4.71434 4.71692 4.88957 4.99881 5.10546 5.15040 5.20751 5.41209 5.47848 5.53344 5.63463 5.88633 5.98487 6.03282 6.11292 6.13686 6.15767 6.23834 6.27706 6.39942 6.56704 6.57129 6.68826 6.77160 6.80999 6.92048 7.13239 7.23454 7.53428 7.55626 7.86931 8.08616 8.35226 8.55386 8.85162 9.41895 10.95379 Molecular weight = 356.16amu Principal moments of inertia in cm(-1) A = 0.025829 B = 0.001790 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.771950 B =15637.582052 C =15647.588899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.226 3.774 3 H 0.066 0.934 4 C -0.529 4.529 5 H 0.081 0.919 6 C 0.076 3.924 7 N -0.892 5.892 8 Si 0.883 3.117 9 H -0.276 1.276 10 H -0.263 1.263 11 H -0.293 1.293 12 N -0.546 5.546 13 C 0.072 3.928 14 C 0.499 3.501 15 O -0.538 6.538 16 C 0.511 3.489 17 O -0.506 6.506 18 N -0.620 5.620 19 C 0.004 3.996 20 C 0.053 3.947 21 N -0.279 5.279 22 N -0.367 5.367 23 C 0.182 3.818 24 C -0.111 4.111 25 C -0.099 4.099 26 C -0.125 4.125 27 C -0.111 4.111 28 C -0.124 4.124 29 C -0.082 4.082 30 C 0.019 3.981 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.267 0.733 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.421 0.579 39 H 0.207 0.793 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.125 0.875 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.969 0.684 30.576 30.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.125 3.875 3 H 0.083 0.917 4 C -0.567 4.567 5 H 0.099 0.901 6 C -0.127 4.127 7 N -0.529 5.529 8 Si 0.713 3.287 9 H -0.203 1.203 10 H -0.188 1.188 11 H -0.220 1.220 12 N -0.276 5.276 13 C -0.070 4.070 14 C 0.279 3.721 15 O -0.417 6.417 16 C 0.295 3.705 17 O -0.381 6.381 18 N -0.266 5.266 19 C -0.101 4.101 20 C -0.134 4.134 21 N -0.100 5.100 22 N -0.151 5.151 23 C 0.061 3.939 24 C -0.112 4.112 25 C -0.118 4.118 26 C -0.143 4.143 27 C -0.129 4.129 28 C -0.142 4.142 29 C -0.101 4.101 30 C -0.129 4.129 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.258 0.742 39 H 0.224 0.776 40 H 0.111 0.889 41 H 0.122 0.878 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.143 0.857 47 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.222 -0.402 31.307 31.742 hybrid contribution -0.662 1.812 -1.099 2.220 sum 4.561 1.410 30.208 30.583 Atomic orbital electron populations 1.22476 0.98526 1.01525 0.99492 1.19496 0.90345 0.95238 0.82434 0.91671 1.21104 1.32971 1.14434 0.88207 0.90097 1.24865 0.95663 0.96605 0.95564 1.69872 1.44896 1.40124 0.97985 0.86916 0.80478 0.83736 0.77567 1.20308 1.18798 1.22039 1.47849 1.45829 1.12759 1.21165 1.22209 1.01289 0.80724 1.02822 1.19568 0.81542 0.86608 0.84334 1.90715 1.55880 1.17885 1.77241 1.20608 0.78497 0.86744 0.84683 1.90540 1.53151 1.15825 1.78580 1.42504 1.54319 1.14726 1.15070 1.17760 1.08458 0.93939 0.89930 1.24585 0.99814 0.95567 0.93435 1.77403 1.15097 1.04621 1.12895 1.48210 1.45113 1.07162 1.14658 1.20516 0.93100 1.02971 0.77285 1.19803 0.99402 0.94685 0.97264 1.21049 0.95404 0.99270 0.96082 1.21136 0.99246 0.96461 0.97473 1.21237 0.98443 0.93542 0.99671 1.21183 0.96515 0.99726 0.96746 1.21065 0.98398 0.95037 0.95560 1.21788 1.04448 0.96256 0.90373 0.94608 0.92845 0.92140 0.92341 0.92443 0.89070 0.91138 0.74221 0.77631 0.88858 0.87755 0.86088 0.85918 0.85988 0.85818 0.85699 0.80560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 8.66 37.16 0.32 -3.10 16 2 C 0.23 5.39 2.22 -69.08 -0.15 5.23 16 3 H 0.07 1.68 5.96 -51.93 -0.31 1.37 16 4 C -0.53 -14.57 8.95 -34.44 -0.31 -14.87 16 5 H 0.08 2.42 7.89 -52.49 -0.41 2.01 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -26.67 13.96 55.43 0.77 -25.89 16 8 Si 0.88 21.40 24.37 -169.99 -4.14 17.25 16 9 H -0.28 -6.40 6.88 56.52 0.39 -6.01 16 10 H -0.26 -6.21 6.52 56.52 0.37 -5.85 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 N -0.55 -11.47 2.75 -175.81 -0.48 -11.95 16 13 C 0.07 1.32 8.75 59.85 0.52 1.84 16 14 C 0.50 9.86 7.73 -11.64 -0.09 9.77 16 15 O -0.54 -11.64 15.82 5.49 0.09 -11.55 16 16 C 0.51 8.43 7.74 -11.64 -0.09 8.34 16 17 O -0.51 -8.54 10.29 5.45 0.06 -8.48 16 18 N -0.62 -8.32 5.45 -10.48 -0.06 -8.38 16 19 C 0.00 0.05 6.90 -83.96 -0.58 -0.53 16 20 C 0.05 0.74 10.84 -17.19 -0.19 0.55 16 21 N -0.28 -3.64 12.39 30.72 0.38 -3.26 16 22 N -0.37 -3.67 3.68 -62.34 -0.23 -3.90 16 23 C 0.18 1.19 6.64 -5.20 -0.03 1.16 16 24 C -0.11 -0.85 5.31 -104.63 -0.56 -1.41 16 25 C -0.10 -0.73 9.70 -39.58 -0.38 -1.11 16 26 C -0.13 -0.88 10.05 -39.58 -0.40 -1.28 16 27 C -0.11 -0.77 10.05 -39.58 -0.40 -1.17 16 28 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 29 C -0.08 -0.65 9.70 -39.58 -0.38 -1.04 16 30 C 0.02 0.18 11.49 -16.91 -0.19 -0.01 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 1.17 3.28 -51.93 -0.17 1.00 16 33 H 0.06 1.20 6.67 -51.93 -0.35 0.85 16 34 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.09 1.51 5.36 -51.94 -0.28 1.23 16 37 H 0.07 1.25 6.44 -51.93 -0.33 0.91 16 38 H 0.42 4.91 8.31 -40.82 -0.34 4.57 16 39 H 0.21 3.00 5.92 -52.49 -0.31 2.69 16 40 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 41 H 0.10 0.38 8.01 -51.93 -0.42 -0.04 16 42 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 43 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 45 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 46 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 47 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 388.30 15.07 5.85 5.85 Total: -1.00 -33.97 388.30 -7.07 -41.04 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.90 Total: 6.17 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -3.40 Total: 3.10 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: 0.38 Total: -53.38 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: 0.14 Total: -20.04 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.14 Total: 17.25 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.97 -7.07 -41.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132363562.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.570 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds