Wall clock time and date at job start Tue Mar 31 2020 05:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47101 * 2 1 4 4 C 1.53001 * 109.46972 * 239.99846 * 2 1 3 5 5 O 1.45196 * 109.46687 * 119.99934 * 2 1 3 6 6 C 1.34644 * 117.00170 * 59.99976 * 5 2 1 7 7 O 1.21507 * 119.99682 * 359.97438 * 6 5 2 8 8 N 1.34769 * 119.99779 * 179.97438 * 6 5 2 9 9 C 1.46505 * 119.99778 * 180.02562 * 8 6 5 10 10 C 1.53008 * 109.47181 * 179.72374 * 9 8 6 11 11 C 1.50695 * 109.46795 * 179.97438 * 10 9 8 12 12 O 1.21280 * 120.00378 * 0.02562 * 11 10 9 13 13 N 1.34785 * 119.99536 * 179.97438 * 11 10 9 14 14 C 1.46961 * 120.59259 * 359.72883 * 13 11 10 15 15 C 1.53817 * 108.39753 * 124.75533 * 14 13 11 16 16 N 1.46965 * 108.57798 * 49.63638 * 15 14 13 17 17 C 1.34777 * 120.59526 * 124.62780 * 16 15 14 18 18 O 1.21685 * 119.99968 * 174.77236 * 17 16 15 19 19 C 1.46372 * 119.99801 * 354.77425 * 17 16 15 20 20 H 1.07996 * 120.00156 * 5.34010 * 19 17 16 21 21 C 1.40052 * 120.00115 * 185.34736 * 19 17 16 22 22 N 1.30669 * 119.99598 * 5.18820 * 21 19 17 23 23 Si 1.86798 * 120.00329 * 185.19368 * 21 19 17 24 24 H 1.48500 * 109.47266 * 84.99372 * 23 21 19 25 25 H 1.48491 * 109.47228 * 204.99747 * 23 21 19 26 26 H 1.48506 * 109.47049 * 324.99737 * 23 21 19 27 27 C 1.46966 * 118.81275 * 304.64367 * 16 15 14 28 28 C 1.46965 * 120.58934 * 180.02562 * 13 11 10 29 29 H 1.09001 * 109.46913 * 300.00379 * 1 2 3 30 30 H 1.09002 * 109.47061 * 59.99936 * 1 2 3 31 31 H 1.08996 * 109.47395 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46819 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47216 * 299.99412 * 3 2 1 34 34 H 1.08999 * 109.47044 * 60.00065 * 3 2 1 35 35 H 1.09006 * 109.46972 * 300.00114 * 4 2 1 36 36 H 1.08998 * 109.47285 * 59.99778 * 4 2 1 37 37 H 1.08994 * 109.46930 * 180.02562 * 4 2 1 38 38 H 0.96996 * 120.00681 * 359.72052 * 8 6 5 39 39 H 1.09000 * 109.47008 * 299.71862 * 9 8 6 40 40 H 1.08991 * 109.47250 * 59.72366 * 9 8 6 41 41 H 1.08992 * 109.46880 * 299.99935 * 10 9 8 42 42 H 1.09002 * 109.46639 * 59.99681 * 10 9 8 43 43 H 1.08994 * 109.60724 * 244.53556 * 14 13 11 44 44 H 1.08992 * 109.61081 * 5.04526 * 14 13 11 45 45 H 1.08995 * 109.73994 * 289.84191 * 15 14 13 46 46 H 1.09005 * 109.67447 * 169.38509 * 15 14 13 47 47 H 0.97003 * 120.00241 * 180.02562 * 22 21 19 48 48 H 1.09006 * 109.61085 * 295.48751 * 27 16 15 49 49 H 1.08996 * 109.75104 * 175.05740 * 27 16 15 50 50 H 1.08994 * 109.61671 * 354.95071 * 28 13 11 51 51 H 1.08997 * 109.60690 * 115.29666 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9508 -2.5094 0.5040 8 7 2.0679 -2.6656 2.4167 9 6 1.6746 -4.0671 2.5827 10 6 2.2808 -4.6173 3.8754 11 6 1.8757 -6.0587 4.0463 12 8 1.1720 -6.5935 3.2159 13 7 2.2964 -6.7538 5.1217 14 6 3.1552 -6.1208 6.1324 15 6 2.4803 -6.2715 7.5063 16 7 2.0933 -7.6779 7.6861 17 6 2.5146 -8.3732 8.7610 18 8 2.1117 -9.5060 8.9490 19 6 3.4568 -7.7659 9.7022 20 1 3.7477 -6.7325 9.5840 21 6 3.9812 -8.5247 10.7561 22 7 3.7098 -9.8001 10.8409 23 14 5.0683 -7.7137 12.0405 24 1 4.2184 -7.1011 13.0929 25 1 5.9563 -8.7341 12.6531 26 1 5.8944 -6.6611 11.3965 27 6 1.2390 -8.3125 6.6726 28 6 1.9097 -8.1603 5.3012 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2490 38 1 2.6310 -2.2381 3.0807 39 1 0.5880 -4.1361 2.6329 40 1 2.0369 -4.6489 1.7352 41 1 3.3673 -4.5483 3.8252 42 1 1.9185 -4.0353 4.7229 43 1 4.1286 -6.6111 6.1442 44 1 3.2783 -5.0636 5.8975 45 1 1.5937 -5.6393 7.5523 46 1 3.1779 -5.9808 8.2918 47 1 4.0726 -10.3258 11.5709 48 1 0.2638 -7.8256 6.6591 49 1 1.1164 -9.3705 6.9043 50 1 1.2100 -8.4503 4.5175 51 1 2.7963 -8.7924 5.2524 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169819747.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:48 Heat of formation + Delta-G solvation = -145.195067 kcal Electronic energy + Delta-G solvation = -31770.115414 eV Core-core repulsion = 27284.060400 eV Total energy + Delta-G solvation = -4486.055014 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 355.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.03417 -40.14794 -38.18743 -37.67532 -35.95685 -35.37975 -34.31485 -33.17236 -32.55153 -31.70682 -30.44559 -27.77253 -27.71290 -27.47815 -26.23362 -24.67527 -23.22502 -22.35908 -21.82666 -20.52847 -19.83154 -18.70315 -18.22298 -17.49989 -16.78264 -16.67510 -16.25575 -15.90184 -15.76745 -15.61649 -15.11008 -14.81086 -14.77661 -14.56913 -14.36452 -14.15786 -14.00373 -13.77880 -13.46849 -12.99424 -12.86615 -12.76418 -12.55410 -12.32085 -12.25039 -12.20282 -12.01208 -11.88435 -11.72852 -11.65053 -11.60158 -11.44481 -11.25713 -11.05822 -11.03325 -10.79502 -10.68252 -10.34252 -10.32550 -10.16339 -9.78224 -9.46989 -8.96793 -8.73954 -7.71495 -7.33449 -6.32550 -4.76993 1.83160 2.59354 2.60052 3.01199 3.06434 3.13377 3.15358 3.82918 3.98465 4.35608 4.36987 4.40101 4.41730 4.44580 4.51850 4.54479 4.75229 5.04965 5.10331 5.18119 5.21420 5.22415 5.25245 5.32928 5.41199 5.45946 5.49878 5.50761 5.56487 5.57725 5.62312 5.67417 5.84095 5.88355 5.90575 5.95311 5.99421 6.09094 6.20139 6.24122 6.28745 6.45956 6.64116 7.11538 7.33280 7.42159 7.45934 7.97632 8.11077 8.15768 8.19903 8.90249 9.27880 10.44695 10.62923 Molecular weight = 355.20amu Principal moments of inertia in cm(-1) A = 0.019509 B = 0.001715 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.878328 B =16319.663506 C =17404.613710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.366 6.366 6 C 0.650 3.350 7 O -0.564 6.564 8 N -0.712 5.712 9 C 0.153 3.847 10 C -0.154 4.154 11 C 0.518 3.482 12 O -0.546 6.546 13 N -0.603 5.603 14 C 0.088 3.912 15 C 0.108 3.892 16 N -0.643 5.643 17 C 0.559 3.441 18 O -0.576 6.576 19 C -0.546 4.546 20 H 0.074 0.926 21 C 0.089 3.911 22 N -0.766 5.766 23 Si 0.907 3.093 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.265 1.265 27 C 0.108 3.892 28 C 0.099 3.901 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.406 0.594 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.047 0.953 46 H 0.107 0.893 47 H 0.270 0.730 48 H 0.046 0.954 49 H 0.096 0.904 50 H 0.093 0.907 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.433 21.172 -17.420 27.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.281 6.281 6 C 0.403 3.597 7 O -0.453 6.453 8 N -0.372 5.372 9 C 0.031 3.969 10 C -0.194 4.194 11 C 0.305 3.695 12 O -0.424 6.424 13 N -0.336 5.336 14 C -0.036 4.036 15 C -0.018 4.018 16 N -0.382 5.382 17 C 0.366 3.634 18 O -0.458 6.458 19 C -0.583 4.583 20 H 0.091 0.909 21 C -0.132 4.132 22 N -0.394 5.394 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.189 1.189 27 C -0.017 4.017 28 C -0.024 4.024 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.240 0.760 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.065 0.935 46 H 0.125 0.875 47 H 0.081 0.919 48 H 0.065 0.935 49 H 0.114 0.886 50 H 0.111 0.889 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.506 19.833 -18.100 26.856 hybrid contribution 0.898 0.724 0.992 1.522 sum 0.392 20.557 -17.108 26.748 Atomic orbital electron populations 1.22525 0.93931 1.05183 1.02507 1.22076 0.94428 0.91486 0.82060 1.21863 1.02256 0.92502 1.03156 1.22522 1.01556 1.03598 0.96456 1.86293 1.71622 1.23626 1.46551 1.18026 0.78985 0.80503 0.82220 1.90928 1.40821 1.70398 1.43130 1.44703 1.55653 1.12862 1.23973 1.21028 1.00898 0.77921 0.97090 1.21826 1.03417 0.94718 0.99476 1.20174 0.80193 0.87853 0.81231 1.90719 1.38185 1.71084 1.42440 1.48095 1.50162 1.12920 1.22420 1.22441 0.94342 0.97749 0.89059 1.21886 0.99213 0.84998 0.95664 1.48188 1.54383 1.10913 1.24685 1.18290 0.80980 0.84907 0.79265 1.90602 1.60458 1.19729 1.75006 1.20916 1.27261 0.98444 1.11639 0.90857 1.25723 0.95433 0.94334 0.97694 1.69984 1.35244 1.06255 1.27907 0.86397 0.79966 0.79562 0.80908 1.19592 1.20486 1.18913 1.21506 0.92745 1.00784 0.86644 1.22120 1.00756 0.80632 0.98903 0.92137 0.91123 0.89303 0.91456 0.90128 0.91433 0.89316 0.91118 0.92159 0.75971 0.90113 0.90163 0.87946 0.87820 0.90447 0.89713 0.93481 0.87518 0.91896 0.93542 0.88575 0.88858 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 8.37 37.16 0.31 -1.19 16 2 C 0.14 1.11 1.13 -90.62 -0.10 1.00 16 3 C -0.14 -0.77 8.85 37.16 0.33 -0.44 16 4 C -0.18 -1.49 8.37 37.16 0.31 -1.18 16 5 O -0.37 -3.56 9.94 -40.34 -0.40 -3.96 16 6 C 0.65 7.19 8.06 54.05 0.44 7.62 16 7 O -0.56 -7.75 11.88 -19.28 -0.23 -7.98 16 8 N -0.71 -6.15 5.56 -65.28 -0.36 -6.51 16 9 C 0.15 1.52 4.96 -4.03 -0.02 1.50 16 10 C -0.15 -1.30 4.15 -27.88 -0.12 -1.41 16 11 C 0.52 6.83 7.70 -10.98 -0.08 6.74 16 12 O -0.55 -9.13 15.39 5.56 0.09 -9.05 16 13 N -0.60 -8.38 2.94 -172.20 -0.51 -8.89 16 14 C 0.09 1.08 6.54 -3.37 -0.02 1.06 16 15 C 0.11 1.71 6.52 -3.36 -0.02 1.69 16 16 N -0.64 -13.47 2.95 -173.84 -0.51 -13.99 16 17 C 0.56 14.96 7.60 -12.99 -0.10 14.86 16 18 O -0.58 -17.85 14.51 5.20 0.08 -17.78 16 19 C -0.55 -14.21 8.88 -35.63 -0.32 -14.52 16 20 H 0.07 1.68 5.63 -52.49 -0.30 1.39 16 21 C 0.09 2.33 5.49 -17.37 -0.10 2.23 16 22 N -0.77 -21.94 11.88 55.55 0.66 -21.28 16 23 Si 0.91 18.88 29.56 -169.99 -5.03 13.85 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 26 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 27 C 0.11 2.03 6.58 -3.57 -0.02 2.00 16 28 C 0.10 1.58 6.59 -3.57 -0.02 1.56 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.95 5.88 -51.93 -0.31 0.65 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.09 0.94 5.88 -51.93 -0.31 0.64 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.41 2.36 8.58 -40.82 -0.35 2.01 16 39 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 40 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 41 H 0.10 0.64 7.90 -51.93 -0.41 0.23 16 42 H 0.10 0.68 7.73 -51.93 -0.40 0.28 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.08 0.69 5.91 -51.93 -0.31 0.38 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.11 1.73 5.29 -51.93 -0.27 1.46 16 47 H 0.27 7.05 8.29 -40.82 -0.34 6.71 16 48 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.10 2.01 7.03 -51.93 -0.36 1.64 16 50 H 0.09 1.46 6.99 -51.93 -0.36 1.10 16 51 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 406.60 15.07 6.13 6.13 Total: -1.00 -36.28 406.60 -7.63 -43.91 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -8.00 Total: 4.02 kcal Atomic # 6 Polarization: 21.06 SS G_CDS: 0.46 Total: 21.53 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.72 Total: -50.67 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -0.47 Total: -38.77 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.28 -7.63 -43.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169819747.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.285 kcal (2) G-P(sol) polarization free energy of solvation -36.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds