Wall clock time and date at job start Tue Mar 31 2020 05:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46423 * 110.99823 * 2 1 4 4 C 1.53381 * 108.67162 * 178.93745 * 3 2 1 5 5 C 1.53031 * 107.94550 * 291.79711 * 4 3 2 6 6 C 1.50810 * 109.68151 * 47.46029 * 5 4 3 7 7 C 1.38587 * 118.06750 * 164.27248 * 6 5 4 8 8 C 1.38604 * 120.43469 * 179.36417 * 7 6 5 9 9 N 1.40183 * 120.13089 * 180.02562 * 8 7 6 10 10 C 1.34774 * 120.00389 * 144.93305 * 9 8 7 11 11 O 1.21602 * 119.99917 * 4.62733 * 10 9 8 12 12 N 1.34774 * 120.00074 * 184.63628 * 10 9 8 13 13 C 1.40188 * 119.99913 * 179.97438 * 12 10 9 14 14 C 1.40403 * 125.97079 * 359.71747 * 13 12 10 15 15 C 1.35249 * 107.86357 * 179.82874 * 14 13 12 16 16 N 1.34969 * 107.85967 * 0.42212 * 15 14 13 17 17 C 1.46499 * 125.97301 * 179.70808 * 16 15 14 18 18 C 1.50704 * 109.46870 * 125.00533 * 17 16 15 19 19 H 1.08004 * 119.99878 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99867 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00180 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99955 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47322 * 89.99629 * 22 20 18 24 24 H 1.48496 * 109.47121 * 209.99462 * 22 20 18 25 25 H 1.48498 * 109.47232 * 329.99781 * 22 20 18 26 26 N 1.31211 * 125.97120 * 180.02562 * 13 12 10 27 27 C 1.38865 * 119.74092 * 359.97438 * 8 7 6 28 28 C 1.37769 * 119.88030 * 0.16023 * 27 8 7 29 29 C 1.38369 * 122.00608 * 343.92068 * 6 5 4 30 30 H 1.09009 * 109.46993 * 289.33316 * 1 2 3 31 31 H 1.08996 * 109.47615 * 49.33070 * 1 2 3 32 32 H 1.08993 * 109.47133 * 169.33538 * 1 2 3 33 33 H 1.08998 * 109.60369 * 59.18421 * 3 2 1 34 34 H 1.08995 * 109.74051 * 298.77245 * 3 2 1 35 35 H 1.09003 * 109.76180 * 172.18548 * 4 3 2 36 36 H 1.08998 * 109.81073 * 51.43275 * 4 3 2 37 37 H 1.08999 * 109.43482 * 287.39353 * 5 4 3 38 38 H 1.09000 * 109.39970 * 167.50067 * 5 4 3 39 39 H 1.08003 * 119.78475 * 359.34219 * 7 6 5 40 40 H 0.97006 * 119.99925 * 324.92900 * 9 8 7 41 41 H 0.97002 * 120.00242 * 359.97438 * 12 10 9 42 42 H 1.07993 * 126.07054 * 359.95986 * 14 13 12 43 43 H 1.08004 * 126.06740 * 180.16095 * 15 14 13 44 44 H 1.09000 * 109.46788 * 245.00203 * 17 16 15 45 45 H 1.08992 * 109.47271 * 5.00140 * 17 16 15 46 46 H 0.97003 * 120.00648 * 180.02562 * 21 20 18 47 47 H 1.07996 * 120.06321 * 180.13744 * 27 8 7 48 48 H 1.07996 * 119.74400 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9937 1.3670 0.0000 4 6 3.5260 1.3048 0.0269 5 6 3.9516 0.7546 1.3900 6 6 3.1385 -0.4722 1.7189 7 6 3.5891 -1.3001 2.7349 8 6 2.8730 -2.4335 3.0867 9 7 3.3344 -3.2661 4.1157 10 6 2.4546 -3.8815 4.9304 11 8 1.2607 -3.7824 4.7217 12 7 2.8980 -4.6065 5.9764 13 6 1.9828 -5.2462 6.8241 14 6 0.5843 -5.2113 6.7043 15 6 0.0633 -5.9530 7.7082 16 7 1.0885 -6.4329 8.4433 17 6 0.9720 -7.2813 9.6320 18 6 1.7828 -8.5362 9.4349 19 1 2.3298 -8.6869 8.5159 20 6 1.8254 -9.4924 10.4273 21 7 1.1589 -9.3091 11.5461 22 14 2.8298 -11.0482 10.1827 23 1 4.2121 -10.8283 10.6791 24 1 2.2050 -12.1645 10.9368 25 1 2.8711 -11.3888 8.7379 26 7 2.2832 -5.9773 7.8713 27 6 1.6961 -2.7403 2.4165 28 6 1.2486 -1.9197 1.4045 29 6 1.9695 -0.7795 1.0453 30 1 -0.3633 0.3403 0.9698 31 1 -0.3634 0.6697 -0.7794 32 1 -0.3633 -1.0098 -0.1902 33 1 1.6336 1.8969 0.8818 34 1 1.6646 1.8876 -0.8992 35 1 3.9379 2.3044 -0.1121 36 1 3.8829 0.6457 -0.7644 37 1 3.7883 1.5139 2.1547 38 1 5.0090 0.4915 1.3601 39 1 4.5045 -1.0608 3.2557 40 1 4.2870 -3.3995 4.2414 41 1 3.8503 -4.6858 6.1427 42 1 0.0240 -4.6872 5.9443 43 1 -0.9867 -6.1267 7.8917 44 1 1.3448 -6.7407 10.5020 45 1 -0.0738 -7.5452 9.7889 46 1 1.1892 -9.9816 12.2445 47 1 1.1329 -3.6209 2.6879 48 1 0.3328 -2.1602 0.8850 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186578691.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:24 Heat of formation + Delta-G solvation = 76.874431 kcal Electronic energy + Delta-G solvation = -29957.612268 eV Core-core repulsion = 25820.788581 eV Total energy + Delta-G solvation = -4136.823687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 355.175 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.36886 -41.69480 -40.87484 -38.16552 -36.22812 -35.48884 -35.28410 -35.06631 -32.73880 -31.09884 -30.94538 -29.99318 -28.48467 -27.91347 -25.45449 -24.91925 -24.37342 -23.08346 -22.69978 -22.04588 -21.31193 -20.39828 -19.36309 -18.70230 -18.42633 -17.95922 -17.59087 -17.13040 -16.78218 -16.55512 -16.21536 -15.91773 -15.64046 -15.55777 -15.42967 -15.05687 -14.60456 -14.44054 -14.29273 -14.25344 -14.02910 -13.85233 -13.80176 -13.58647 -13.12960 -12.95377 -12.91202 -12.81114 -12.73257 -12.29658 -12.16184 -12.04546 -11.80908 -11.63998 -11.62024 -11.41522 -11.32091 -11.00697 -10.72017 -10.21239 -9.76044 -9.66127 -9.11814 -8.35120 -8.30794 -6.46741 0.33401 0.44241 1.00020 1.11411 1.38388 1.38980 1.50434 1.65832 2.06212 2.31824 2.35851 2.68818 2.96581 2.98982 3.06008 3.72290 3.88125 3.93421 3.96724 4.09535 4.26547 4.29339 4.35930 4.39722 4.53747 4.55524 4.57238 4.70423 4.71034 4.83436 4.87700 4.91919 4.93587 4.95241 5.00999 5.02651 5.07198 5.10807 5.19645 5.30290 5.34767 5.44069 5.56633 5.59670 5.76953 5.85123 5.87293 5.95260 6.13497 6.28489 6.36646 6.62319 6.70411 7.09949 7.23169 7.32133 8.74842 Molecular weight = 355.17amu Principal moments of inertia in cm(-1) A = 0.028028 B = 0.001644 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.770777 B =17028.147773 C =17447.783414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.505 5.505 3 C 0.051 3.949 4 C -0.119 4.119 5 C -0.077 4.077 6 C -0.114 4.114 7 C -0.112 4.112 8 C 0.121 3.879 9 N -0.662 5.662 10 C 0.712 3.288 11 O -0.582 6.582 12 N -0.631 5.631 13 C 0.284 3.716 14 C -0.292 4.292 15 C 0.057 3.943 16 N -0.344 5.344 17 C 0.272 3.728 18 C -0.548 4.548 19 H 0.052 0.948 20 C 0.019 3.981 21 N -0.920 5.920 22 Si 0.972 3.028 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.273 1.273 26 N -0.345 5.345 27 C -0.111 4.111 28 C -0.153 4.153 29 C 0.104 3.896 30 H 0.033 0.967 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.151 0.849 40 H 0.425 0.575 41 H 0.423 0.577 42 H 0.167 0.833 43 H 0.201 0.799 44 H 0.022 0.978 45 H 0.059 0.941 46 H 0.272 0.728 47 H 0.121 0.879 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.558 23.437 -24.473 34.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.219 5.219 3 C -0.075 4.075 4 C -0.157 4.157 5 C -0.114 4.114 6 C -0.118 4.118 7 C -0.133 4.133 8 C 0.026 3.974 9 N -0.311 5.311 10 C 0.412 3.588 11 O -0.458 6.458 12 N -0.282 5.282 13 C 0.029 3.971 14 C -0.323 4.323 15 C -0.092 4.092 16 N -0.126 5.126 17 C 0.153 3.847 18 C -0.586 4.586 19 H 0.071 0.929 20 C -0.182 4.182 21 N -0.559 5.559 22 Si 0.796 3.204 23 H -0.198 1.198 24 H -0.197 1.197 25 H -0.198 1.198 26 N -0.176 5.176 27 C -0.132 4.132 28 C -0.174 4.174 29 C 0.005 3.995 30 H 0.052 0.948 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.169 0.831 40 H 0.263 0.737 41 H 0.261 0.739 42 H 0.184 0.816 43 H 0.218 0.782 44 H 0.040 0.960 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.139 0.861 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.495 22.753 -24.107 33.452 hybrid contribution 0.222 -0.770 0.736 1.088 sum 4.717 21.983 -23.370 32.429 Atomic orbital electron populations 1.22596 0.84251 1.03913 1.01678 1.58312 1.09382 1.14050 1.40119 1.22312 0.96386 0.86438 1.02383 1.21719 0.94054 1.02901 0.96978 1.20588 0.99345 0.93493 0.97938 1.19611 0.96396 0.98912 0.96881 1.20885 1.01749 0.91787 0.98876 1.17434 0.97011 0.92364 0.90582 1.42195 1.09893 1.48328 1.30703 1.15703 0.85280 0.78586 0.79193 1.90842 1.15237 1.65724 1.74013 1.41275 1.09406 1.51023 1.26537 1.19022 0.90030 0.96058 0.92039 1.21681 0.92175 1.12542 1.05906 1.23157 0.96269 0.96807 0.92928 1.48824 1.02123 1.38139 1.23486 1.19347 0.98589 0.87621 0.79101 1.21406 1.30936 1.03226 1.03013 0.92928 1.25731 0.96473 1.01692 0.94286 1.69991 1.42238 1.36826 1.06824 0.85346 0.78648 0.78157 0.78245 1.19786 1.19707 1.19798 1.77246 1.08111 1.20086 1.12165 1.21086 0.96682 1.00468 0.94917 1.21135 1.01562 0.95612 0.99053 1.18798 0.95112 0.94886 0.90736 0.94788 0.88772 0.90442 0.93783 0.88153 0.88191 0.91345 0.89913 0.88997 0.83128 0.73656 0.73942 0.81558 0.78226 0.96006 0.92313 0.91849 0.86132 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 8.81 127.69 1.12 1.39 16 2 N -0.50 -7.77 4.78 -720.42 -3.45 -11.21 16 3 C 0.05 0.53 5.46 86.52 0.47 1.00 16 4 C -0.12 -1.03 6.19 30.73 0.19 -0.84 16 5 C -0.08 -0.80 5.80 29.89 0.17 -0.62 16 6 C -0.11 -1.92 5.74 -19.72 -0.11 -2.04 16 7 C -0.11 -1.91 9.55 22.44 0.21 -1.70 16 8 C 0.12 2.67 6.30 38.04 0.24 2.91 16 9 N -0.66 -13.67 5.35 -317.18 -1.70 -15.36 16 10 C 0.71 20.68 8.38 179.06 1.50 22.18 16 11 O -0.58 -20.67 10.91 -4.04 -0.04 -20.71 16 12 N -0.63 -19.05 5.45 -321.23 -1.75 -20.80 16 13 C 0.28 11.39 8.11 133.32 1.08 12.47 16 14 C -0.29 -11.57 9.61 22.11 0.21 -11.36 16 15 C 0.06 2.27 11.44 83.52 0.96 3.22 16 16 N -0.34 -16.24 3.67 -351.83 -1.29 -17.53 16 17 C 0.27 14.18 6.26 85.63 0.54 14.72 16 18 C -0.55 -31.01 9.24 25.60 0.24 -30.77 16 19 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 20 C 0.02 1.03 5.46 84.65 0.46 1.49 16 21 N -0.92 -52.20 13.29 21.45 0.28 -51.91 16 22 Si 0.97 43.71 29.54 68.60 2.03 45.74 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 26 N -0.35 -16.07 12.42 -54.44 -0.68 -16.74 16 27 C -0.11 -2.81 8.69 22.31 0.19 -2.62 16 28 C -0.15 -3.34 9.02 22.49 0.20 -3.14 16 29 C 0.10 2.00 5.82 38.25 0.22 2.22 16 30 H 0.03 0.46 8.13 -2.38 -0.02 0.45 16 31 H 0.09 0.76 8.06 -2.39 -0.02 0.74 16 32 H 0.08 0.97 6.31 -2.39 -0.02 0.95 16 33 H 0.04 0.49 8.11 -2.39 -0.02 0.47 16 34 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.42 5.47 8.84 -92.70 -0.82 4.65 16 41 H 0.42 9.92 8.84 -92.71 -0.82 9.10 16 42 H 0.17 6.44 5.91 -2.91 -0.02 6.42 16 43 H 0.20 6.31 8.06 -2.91 -0.02 6.29 16 44 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.06 2.99 8.07 -2.39 -0.02 2.97 16 46 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 47 H 0.12 3.61 6.22 -2.91 -0.02 3.59 16 48 H 0.13 2.61 5.96 -2.91 -0.02 2.59 16 Total: -1.00 -73.33 392.15 0.69 -72.64 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: -0.62 Total: 27.37 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 7.91 Total: 8.51 kcal Atomic # 7 Polarization: -124.98 SS G_CDS: -8.58 Total: -133.56 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.04 Total: -20.71 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -73.33 0.69 -72.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186578691.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.516 kcal (2) G-P(sol) polarization free energy of solvation -73.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds