Wall clock time and date at job start Tue Mar 31 2020 05:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42894 * 109.47646 * 2 1 4 4 C 1.35899 * 117.00269 * 180.02562 * 3 2 1 5 5 C 1.38753 * 120.05636 * 0.02562 * 4 3 2 6 6 C 1.38121 * 119.94386 * 179.97438 * 5 4 3 7 7 C 1.38288 * 120.05824 * 0.02562 * 6 5 4 8 8 C 1.38248 * 120.10946 * 359.97438 * 7 6 5 9 9 C 1.38168 * 120.05771 * 0.02562 * 8 7 6 10 10 C 1.50700 * 120.02851 * 179.97438 * 9 8 7 11 11 N 1.46506 * 109.46418 * 260.01759 * 10 9 8 12 12 C 1.34780 * 119.99609 * 180.02562 * 11 10 9 13 13 S 1.71203 * 119.99961 * 359.97438 * 12 11 10 14 14 N 1.34770 * 120.00015 * 180.02562 * 12 11 10 15 15 C 1.39143 * 119.99992 * 174.25483 * 14 12 11 16 16 C 1.39508 * 119.83634 * 319.00225 * 15 14 12 17 17 C 1.36361 * 120.16459 * 179.76273 * 16 15 14 18 18 C 1.40881 * 119.82962 * 0.50985 * 17 16 15 19 19 C 1.41143 * 120.15888 * 179.72142 * 18 17 16 20 20 H 1.07995 * 119.99863 * 205.28255 * 19 18 17 21 21 C 1.39883 * 119.99785 * 25.27511 * 19 18 17 22 22 N 1.30888 * 120.00396 * 16.91274 * 21 19 18 23 23 Si 1.86809 * 119.99713 * 196.90760 * 21 19 18 24 24 H 1.48498 * 109.46936 * 60.00193 * 23 21 19 25 25 H 1.48504 * 109.47006 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47141 * 300.00011 * 23 21 19 27 27 C 1.40868 * 119.67813 * 359.74463 * 18 17 16 28 28 C 1.36360 * 119.83513 * 359.97438 * 27 18 17 29 29 H 1.09000 * 109.46929 * 59.98996 * 1 2 3 30 30 H 1.08994 * 109.47483 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46406 * 299.99721 * 1 2 3 32 32 H 1.09012 * 109.46808 * 240.00327 * 2 1 3 33 33 H 1.09001 * 109.47435 * 120.01147 * 2 1 3 34 34 H 1.08002 * 120.02714 * 359.95743 * 5 4 3 35 35 H 1.08004 * 119.96998 * 179.72212 * 6 5 4 36 36 H 1.07992 * 119.94395 * 179.97438 * 7 6 5 37 37 H 1.07997 * 119.97208 * 180.02562 * 8 7 6 38 38 H 1.08992 * 109.47292 * 20.01539 * 10 9 8 39 39 H 1.08999 * 109.47215 * 140.02232 * 10 9 8 40 40 H 0.96995 * 120.00406 * 0.02562 * 11 10 9 41 41 H 0.97001 * 119.99841 * 354.24791 * 14 12 11 42 42 H 1.07997 * 119.91721 * 0.02562 * 16 15 14 43 43 H 1.08003 * 120.08137 * 180.25561 * 17 16 15 44 44 H 0.96999 * 119.99481 * 179.97438 * 22 21 19 45 45 H 1.08001 * 120.08340 * 179.97438 * 27 18 17 46 46 H 1.07997 * 119.91742 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3537 1.5252 -0.0005 5 6 4.2000 0.4256 -0.0016 6 6 5.5690 0.6092 -0.0027 7 6 6.0964 1.8875 -0.0022 8 6 5.2553 2.9848 -0.0011 9 6 3.8852 2.8065 0.0000 10 6 2.9690 4.0030 0.0017 11 7 2.4833 4.2440 1.3627 12 6 1.6436 5.2696 1.6068 13 16 1.1452 6.2911 0.3265 14 7 1.1972 5.4917 2.8589 15 6 0.4278 6.6180 3.1336 16 6 0.7614 7.8439 2.5573 17 6 0.0092 8.9510 2.8181 18 6 -1.1008 8.8568 3.6805 19 6 -1.8807 9.9995 3.9599 20 1 -2.4431 10.0576 4.8801 21 6 -1.9249 11.0568 3.0451 22 7 -1.5321 10.8709 1.8105 23 14 -2.5448 12.7341 3.5856 24 1 -1.6893 13.2471 4.6856 25 1 -2.4926 13.6746 2.4375 26 1 -3.9458 12.6139 4.0629 27 6 -1.4283 7.6167 4.2629 28 6 -0.6702 6.5169 3.9883 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5140 0.8899 34 1 3.7886 -0.5730 -0.0013 35 1 6.2281 -0.2464 0.0010 36 1 7.1670 2.0290 -0.0026 37 1 5.6696 3.9821 -0.0012 38 1 3.5144 4.8787 -0.3498 39 1 2.1223 3.8132 -0.6579 40 1 2.7660 3.6655 2.0882 41 1 1.4122 4.8662 3.5685 42 1 1.6150 7.9154 1.8996 43 1 0.2663 9.8985 2.3679 44 1 -1.5632 11.6041 1.1761 45 1 -2.2776 7.5371 4.9253 46 1 -0.9199 5.5656 4.4344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225441921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:21 Heat of formation + Delta-G solvation = 29.714825 kcal Electronic energy + Delta-G solvation = -27685.331598 eV Core-core repulsion = 23859.204375 eV Total energy + Delta-G solvation = -3826.127223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 356.130 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.69763 -38.99596 -37.97360 -37.11590 -35.08103 -33.26794 -32.30568 -31.56161 -29.98026 -29.47618 -28.92654 -26.43182 -24.68513 -24.39516 -23.36093 -22.08722 -21.69122 -21.10286 -20.47395 -18.58628 -17.95322 -17.28509 -17.24649 -16.46740 -16.40387 -15.86239 -15.33798 -15.02508 -14.90275 -14.62246 -14.47294 -13.93582 -13.80868 -13.64631 -13.28124 -13.18014 -12.91938 -12.69065 -12.33107 -12.22251 -12.06054 -12.03552 -11.77734 -11.70695 -11.19056 -11.11871 -11.09425 -11.05271 -10.83846 -10.50418 -10.38032 -9.83914 -9.59128 -9.35213 -9.27346 -8.77268 -8.55314 -7.61850 -7.29723 -6.93921 -6.73704 -6.16971 -4.27836 0.84161 1.06237 1.84754 2.58709 2.83007 2.88630 3.10459 3.11965 3.13240 3.20270 3.30995 3.53197 3.95763 4.12052 4.30593 4.42199 4.54777 4.60123 4.67747 4.70356 4.83420 4.90723 4.96742 5.15235 5.37870 5.45036 5.46692 5.53078 5.74867 5.76584 5.87582 5.93669 6.08942 6.14082 6.17450 6.37888 6.41277 6.45180 6.66508 7.04971 7.05351 7.09165 7.19259 7.29763 7.37782 7.66722 7.74643 8.01103 8.10737 8.26916 8.33154 8.69175 8.91631 9.02614 10.21464 Molecular weight = 356.13amu Principal moments of inertia in cm(-1) A = 0.018756 B = 0.002083 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.508235 B =13441.835268 C =14056.452460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.055 3.945 3 O -0.305 6.305 4 C 0.149 3.851 5 C -0.215 4.215 6 C -0.072 4.072 7 C -0.162 4.162 8 C -0.058 4.058 9 C -0.144 4.144 10 C 0.184 3.816 11 N -0.690 5.690 12 C 0.544 3.456 13 S -0.638 6.638 14 N -0.594 5.594 15 C -0.034 4.034 16 C -0.038 4.038 17 C -0.164 4.164 18 C 0.119 3.881 19 C -0.454 4.454 20 H 0.078 0.922 21 C 0.073 3.927 22 N -0.775 5.775 23 Si 0.909 3.091 24 H -0.263 1.263 25 H -0.278 1.278 26 H -0.266 1.266 27 C -0.227 4.227 28 C -0.082 4.082 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.389 0.611 41 H 0.388 0.612 42 H 0.111 0.889 43 H 0.120 0.880 44 H 0.283 0.717 45 H 0.095 0.905 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.823 -21.564 -2.020 25.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.020 4.020 3 O -0.218 6.218 4 C 0.103 3.897 5 C -0.234 4.234 6 C -0.091 4.091 7 C -0.180 4.180 8 C -0.077 4.077 9 C -0.146 4.146 10 C 0.061 3.939 11 N -0.322 5.322 12 C 0.186 3.814 13 S -0.510 6.510 14 N -0.214 5.214 15 C -0.127 4.127 16 C -0.060 4.060 17 C -0.185 4.185 18 C 0.116 3.884 19 C -0.483 4.483 20 H 0.096 0.904 21 C -0.146 4.146 22 N -0.399 5.399 23 Si 0.733 3.267 24 H -0.188 1.188 25 H -0.203 1.203 26 H -0.190 1.190 27 C -0.247 4.247 28 C -0.103 4.103 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.224 0.776 41 H 0.224 0.776 42 H 0.129 0.871 43 H 0.138 0.862 44 H 0.095 0.905 45 H 0.113 0.887 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.317 -20.566 -3.250 24.192 hybrid contribution 0.205 -0.850 1.355 1.613 sum 12.523 -21.417 -1.895 24.881 Atomic orbital electron populations 1.21782 0.92390 1.02816 1.04099 1.22818 0.96249 0.81747 1.01164 1.86194 1.18457 1.29333 1.87865 1.18903 0.82705 0.93453 0.94677 1.21253 0.94434 0.97996 1.09682 1.20999 0.94286 0.97444 0.96353 1.21077 1.00048 0.92330 1.04559 1.21042 0.91484 0.99656 0.95532 1.19372 0.94256 0.92074 1.08866 1.20188 0.97066 0.94428 0.82255 1.44840 1.46441 1.29515 1.11401 1.22377 0.83091 0.86295 0.89654 1.93387 1.72960 1.51279 1.33328 1.41964 1.48959 1.24626 1.05807 1.16898 0.99473 0.84680 1.11660 1.20522 0.99525 0.90693 0.95266 1.20876 0.96211 0.97711 1.03701 1.17705 0.90201 0.91420 0.89069 1.19567 1.24616 0.99803 1.04289 0.90368 1.25978 0.93825 1.00715 0.94129 1.69884 1.33794 1.33409 1.02801 0.86363 0.80079 0.81011 0.79252 1.18794 1.20264 1.19019 1.20456 1.02140 0.92836 1.09280 1.19983 0.93751 0.97232 0.99326 0.91179 0.90361 0.91354 0.92016 0.92149 0.85417 0.85744 0.85632 0.84847 0.89207 0.88852 0.77596 0.77626 0.87109 0.86208 0.90545 0.88704 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.41 5.46 37.16 0.20 0.62 16 3 O -0.31 -3.29 9.37 -19.42 -0.18 -3.47 16 4 C 0.15 1.50 6.66 -39.21 -0.26 1.24 16 5 C -0.21 -1.74 9.04 -39.43 -0.36 -2.09 16 6 C -0.07 -0.52 10.04 -39.61 -0.40 -0.92 16 7 C -0.16 -1.21 10.04 -39.56 -0.40 -1.61 16 8 C -0.06 -0.51 9.67 -39.60 -0.38 -0.89 16 9 C -0.14 -1.50 5.26 -104.47 -0.55 -2.05 16 10 C 0.18 2.37 4.92 -5.19 -0.03 2.34 16 11 N -0.69 -9.28 5.55 -63.21 -0.35 -9.63 16 12 C 0.54 9.82 7.73 -86.92 -0.67 9.15 16 13 S -0.64 -14.85 24.96 -107.50 -2.68 -17.53 16 14 N -0.59 -10.54 5.29 -11.28 -0.06 -10.60 16 15 C -0.03 -0.77 5.94 -83.59 -0.50 -1.26 16 16 C -0.04 -0.96 7.76 -39.78 -0.31 -1.27 16 17 C -0.16 -4.43 8.63 -39.26 -0.34 -4.77 16 18 C 0.12 3.20 5.57 -106.80 -0.59 2.61 16 19 C -0.45 -12.04 9.04 -37.86 -0.34 -12.39 16 20 H 0.08 1.96 7.90 -52.49 -0.41 1.55 16 21 C 0.07 1.86 5.15 -17.34 -0.09 1.78 16 22 N -0.78 -20.73 10.94 55.54 0.61 -20.12 16 23 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 24 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 26 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 27 C -0.23 -5.54 9.74 -39.26 -0.38 -5.92 16 28 C -0.08 -1.82 9.90 -39.78 -0.39 -2.22 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.38 7.66 -51.92 -0.40 -0.01 16 33 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 34 H 0.13 0.79 6.30 -52.49 -0.33 0.46 16 35 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.13 1.02 8.04 -52.49 -0.42 0.60 16 38 H 0.09 1.21 7.85 -51.93 -0.41 0.80 16 39 H 0.09 1.41 7.70 -51.93 -0.40 1.01 16 40 H 0.39 4.22 8.48 -40.82 -0.35 3.87 16 41 H 0.39 5.34 8.84 -40.82 -0.36 4.98 16 42 H 0.11 2.79 6.16 -47.06 -0.29 2.50 16 43 H 0.12 3.37 6.17 -52.48 -0.32 3.05 16 44 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 45 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 46 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 395.59 15.07 5.96 5.96 Total: -1.00 -32.86 395.59 -13.33 -46.19 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -6.19 Total: 13.84 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -5.40 Total: -18.39 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.20 Total: -40.35 kcal Atomic # 8 Polarization: -3.29 SS G_CDS: -0.18 Total: -3.47 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Atomic # 16 Polarization: -14.85 SS G_CDS: -2.68 Total: -17.53 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.86 -13.33 -46.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225441921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.902 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds