Wall clock time and date at job start Tue Mar 31 2020 06:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 119.99862 * 2 1 4 4 H 1.48502 * 109.46981 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47404 * 299.99772 * 3 2 1 6 6 H 1.48504 * 109.47373 * 60.00392 * 3 2 1 7 7 C 1.37873 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00403 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00082 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47174 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47348 * 180.02562 * 10 9 7 12 12 C 1.34562 * 119.78589 * 270.00172 * 11 10 9 13 13 O 1.21296 * 119.61905 * 0.79290 * 12 11 10 14 14 C 1.50499 * 120.76039 * 180.79935 * 12 11 10 15 15 C 1.52896 * 109.90712 * 324.76735 * 14 12 11 16 16 C 1.50679 * 109.54329 * 48.67226 * 15 14 12 17 17 C 1.38048 * 120.12315 * 146.33431 * 16 15 14 18 18 C 1.38882 * 119.96693 * 180.24460 * 17 16 15 19 19 N 1.39898 * 120.00419 * 179.72662 * 18 17 16 20 20 C 1.46498 * 119.99858 * 180.02562 * 19 18 17 21 21 C 1.50700 * 109.46769 * 179.72252 * 20 19 18 22 22 C 1.33638 * 126.03862 * 90.00191 * 21 20 19 23 23 N 1.31786 * 114.50007 * 179.97438 * 22 21 20 24 24 C 1.29027 * 117.12322 * 359.97438 * 23 22 21 25 25 S 1.70979 * 110.16711 * 359.72545 * 24 23 22 26 26 C 1.38905 * 119.98990 * 359.44824 * 18 17 16 27 27 C 1.38047 * 120.01369 * 0.25939 * 26 18 17 28 28 C 1.38845 * 119.83159 * 326.01304 * 16 15 14 29 29 H 0.97000 * 119.99683 * 0.02562 * 1 2 3 30 30 H 1.08991 * 109.47082 * 60.00446 * 9 7 2 31 31 H 1.09000 * 109.47362 * 300.00160 * 9 7 2 32 32 H 1.09001 * 109.47145 * 59.99761 * 10 9 7 33 33 H 1.09000 * 109.47050 * 300.00282 * 10 9 7 34 34 H 1.08992 * 109.39612 * 204.63766 * 14 12 11 35 35 H 1.08994 * 109.39934 * 84.90064 * 14 12 11 36 36 H 1.09005 * 109.46418 * 288.65036 * 15 14 12 37 37 H 1.09000 * 109.44818 * 168.68338 * 15 14 12 38 38 H 1.08001 * 120.01964 * 359.97398 * 17 16 15 39 39 H 0.97001 * 119.99696 * 359.72011 * 19 18 17 40 40 H 1.09004 * 109.46963 * 299.72046 * 20 19 18 41 41 H 1.08994 * 109.47567 * 59.72198 * 20 19 18 42 42 H 1.07999 * 122.75004 * 359.97438 * 22 21 20 43 43 H 1.08006 * 124.91472 * 180.02562 * 24 23 22 44 44 H 1.07999 * 119.99395 * 180.27641 * 26 18 17 45 45 H 1.08002 * 120.00488 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 7 1.5127 -4.9308 0.0033 12 6 1.1780 -5.5090 1.1713 13 8 1.4737 -4.9664 2.2152 14 6 0.4413 -6.8210 1.1975 15 6 -0.5390 -6.8912 0.0263 16 6 0.1666 -6.4983 -1.2458 17 6 -0.1828 -7.0901 -2.4430 18 6 0.4732 -6.7293 -3.6127 19 7 0.1237 -7.3327 -4.8255 20 6 0.8161 -6.9524 -6.0592 21 6 0.2605 -7.7475 -7.2126 22 6 -0.7663 -7.3919 -7.9904 23 7 -1.0622 -8.2609 -8.9360 24 6 -0.3418 -9.3295 -8.9993 25 16 0.8561 -9.3058 -7.7795 26 6 1.4724 -5.7650 -3.5793 27 6 1.8172 -5.1691 -2.3827 28 6 1.1652 -5.5342 -1.2123 29 1 -0.4850 0.8401 -0.0004 30 1 0.6241 -2.5575 -0.8880 31 1 0.6246 -2.5563 0.8919 32 1 2.8719 -3.6036 0.8927 33 1 2.8718 -3.6052 -0.8873 34 1 -0.1078 -6.9092 2.1349 35 1 1.1569 -7.6396 1.1202 36 1 -1.3695 -6.2086 0.2065 37 1 -0.9189 -7.9084 -0.0686 38 1 -0.9629 -7.8366 -2.4694 39 1 -0.5741 -8.0061 -4.8488 40 1 0.6675 -5.8888 -6.2462 41 1 1.8815 -7.1578 -5.9561 42 1 -1.3092 -6.4681 -7.8553 43 1 -0.4731 -10.1217 -9.7216 44 1 1.9795 -5.4811 -4.4896 45 1 2.5939 -4.4191 -2.3569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225537939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:58 Heat of formation + Delta-G solvation = 39.042671 kcal Electronic energy + Delta-G solvation = -28060.298619 eV Core-core repulsion = 24169.149971 eV Total energy + Delta-G solvation = -3891.148648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 357.125 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.74817 -40.12119 -38.73346 -36.56144 -35.03795 -34.02276 -32.92814 -31.53069 -30.18047 -29.54042 -28.16781 -26.48461 -25.35853 -24.64390 -23.80797 -22.35453 -21.94074 -20.66001 -20.31979 -18.70850 -18.54630 -17.53160 -16.82363 -16.63949 -16.27893 -15.84463 -15.37128 -15.19264 -14.64386 -14.62533 -14.49727 -14.42292 -14.17427 -13.73900 -13.60110 -13.55741 -13.05624 -12.97332 -12.85159 -12.55179 -12.40264 -12.16855 -11.90601 -11.58358 -11.46407 -11.22366 -10.98885 -10.88561 -10.67313 -10.43541 -10.11866 -9.87875 -9.84614 -9.77668 -9.48228 -9.46905 -9.08956 -8.70017 -8.58942 -8.35096 -6.86008 -5.99771 -4.03197 0.14689 0.85227 1.25712 1.46966 1.61920 2.32866 3.02078 3.32039 3.34029 3.38846 3.41208 3.45078 3.86206 4.03306 4.29649 4.47034 4.65580 4.68223 4.80161 4.80606 4.88090 5.06943 5.17164 5.24298 5.32988 5.36389 5.37580 5.39769 5.52695 5.66123 5.77294 5.85907 5.94135 6.04005 6.10703 6.24314 6.31403 6.49686 6.52721 6.76408 6.81978 7.03440 7.20135 7.27029 7.58526 7.64779 7.71843 7.96878 8.00230 8.34932 8.53119 9.03292 9.60514 11.11665 Molecular weight = 357.13amu Principal moments of inertia in cm(-1) A = 0.010602 B = 0.002285 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.465624 B =12253.517543 C =14193.865063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.015 3.985 10 C 0.107 3.893 11 N -0.544 5.544 12 C 0.510 3.490 13 O -0.528 6.528 14 C -0.135 4.135 15 C -0.075 4.075 16 C -0.083 4.083 17 C -0.156 4.156 18 C 0.184 3.816 19 N -0.750 5.750 20 C 0.208 3.792 21 C -0.239 4.239 22 C 0.055 3.945 23 N -0.473 5.473 24 C 0.019 3.981 25 S 0.138 5.862 26 C -0.164 4.164 27 C -0.100 4.100 28 C 0.128 3.872 29 H 0.260 0.740 30 H 0.019 0.981 31 H 0.021 0.979 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.122 0.878 39 H 0.398 0.602 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.179 0.821 43 H 0.200 0.800 44 H 0.122 0.878 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.173 -23.599 -16.011 28.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.076 0.924 9 C -0.022 4.022 10 C -0.013 4.013 11 N -0.267 5.267 12 C 0.299 3.701 13 O -0.404 6.404 14 C -0.175 4.175 15 C -0.112 4.112 16 C -0.086 4.086 17 C -0.179 4.179 18 C 0.083 3.917 19 N -0.384 5.384 20 C 0.081 3.919 21 C -0.360 4.360 22 C -0.098 4.098 23 N -0.186 5.186 24 C -0.278 4.278 25 S 0.391 5.609 26 C -0.186 4.186 27 C -0.120 4.120 28 C 0.032 3.968 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.040 0.960 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.139 0.861 39 H 0.232 0.768 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.196 0.804 43 H 0.216 0.784 44 H 0.140 0.860 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.354 -23.700 -15.627 28.390 hybrid contribution -0.439 1.518 -0.176 1.590 sum -0.085 -22.182 -15.803 27.236 Atomic orbital electron populations 1.69992 1.06100 1.26533 1.50466 1.24999 0.94843 0.99286 0.95170 0.86502 0.80087 0.83641 0.77571 1.19654 1.21009 1.20973 1.21096 0.93023 0.90588 1.51121 0.92425 1.19355 0.94271 0.90757 0.97852 1.22112 0.95954 0.81218 1.01991 1.45775 1.54142 1.22991 1.03779 1.20539 0.79509 0.86872 0.83181 1.90732 1.53758 1.64476 1.31397 1.21657 0.99330 0.95716 1.00837 1.20399 0.97654 1.02587 0.90607 1.19215 0.96252 0.98023 0.95089 1.20084 1.03141 1.04405 0.90284 1.17570 0.95014 0.93787 0.85310 1.44480 1.43483 1.46872 1.03592 1.19455 0.95791 0.96985 0.79627 1.26031 1.03859 1.00401 1.05735 1.21937 0.96162 1.00353 0.91336 1.66392 1.27964 1.02350 1.21915 1.28516 0.96201 1.00230 1.02863 1.84209 1.33460 1.16719 1.26532 1.20400 1.00510 0.99731 0.98003 1.20734 1.00065 1.00524 0.90719 1.17544 0.96649 0.96222 0.86394 0.93013 0.96294 0.96035 0.90368 0.91093 0.87925 0.88619 0.89837 0.89706 0.86054 0.76797 0.89991 0.91078 0.80384 0.78355 0.85983 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.38 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.42 5.30 -27.88 -0.15 0.27 16 10 C 0.11 2.34 5.08 -4.04 -0.02 2.32 16 11 N -0.54 -10.45 2.70 -113.56 -0.31 -10.75 16 12 C 0.51 9.68 7.46 -11.18 -0.08 9.59 16 13 O -0.53 -12.14 16.61 5.54 0.09 -12.05 16 14 C -0.14 -1.79 6.07 -28.03 -0.17 -1.96 16 15 C -0.08 -0.89 5.99 -27.95 -0.17 -1.06 16 16 C -0.08 -1.13 5.66 -104.48 -0.59 -1.72 16 17 C -0.16 -1.80 9.53 -39.41 -0.38 -2.18 16 18 C 0.18 2.07 6.66 -83.69 -0.56 1.51 16 19 N -0.75 -6.41 5.73 -59.76 -0.34 -6.75 16 20 C 0.21 1.52 5.44 -5.19 -0.03 1.49 16 21 C -0.24 -1.67 5.97 -35.92 -0.21 -1.89 16 22 C 0.05 0.43 11.25 -19.18 -0.22 0.22 16 23 N -0.47 -4.12 10.54 -15.75 -0.17 -4.28 16 24 C 0.02 0.12 12.23 51.58 0.63 0.75 16 25 S 0.14 0.79 23.22 -107.50 -2.50 -1.71 16 26 C -0.16 -2.03 9.31 -39.40 -0.37 -2.40 16 27 C -0.10 -1.50 9.33 -39.42 -0.37 -1.87 16 28 C 0.13 2.10 6.33 -83.63 -0.53 1.57 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.79 7.40 -51.93 -0.38 1.41 16 33 H 0.07 1.39 5.81 -51.93 -0.30 1.09 16 34 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.08 0.73 8.06 -51.93 -0.42 0.31 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.40 3.00 8.48 -40.82 -0.35 2.66 16 40 H 0.08 0.60 7.95 -51.93 -0.41 0.19 16 41 H 0.07 0.50 7.95 -51.93 -0.41 0.08 16 42 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 43 H 0.20 0.58 8.06 -52.48 -0.42 0.16 16 44 H 0.12 1.26 6.73 -52.49 -0.35 0.91 16 45 H 0.13 2.04 6.01 -52.49 -0.32 1.72 16 LS Contribution 388.43 15.07 5.85 5.85 Total: -1.00 -35.54 388.43 -11.13 -46.67 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.87 Total: 1.71 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -3.62 Total: -8.94 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.08 Total: -48.43 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.50 Total: -1.71 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.54 -11.13 -46.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225537939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.712 kcal (2) G-P(sol) polarization free energy of solvation -35.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds