Wall clock time and date at job start Tue Mar 31 2020 06:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 119.99862 * 2 1 4 4 H 1.48502 * 109.46981 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47404 * 299.99772 * 3 2 1 6 6 H 1.48504 * 109.47373 * 60.00392 * 3 2 1 7 7 C 1.37873 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00403 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00082 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47174 * 180.02562 * 9 7 2 11 11 N 1.46494 * 109.47348 * 180.02562 * 10 9 7 12 12 C 1.34562 * 119.78589 * 270.00172 * 11 10 9 13 13 O 1.21296 * 119.61905 * 0.79290 * 12 11 10 14 14 C 1.50499 * 120.76039 * 180.79935 * 12 11 10 15 15 C 1.52896 * 109.90712 * 324.76735 * 14 12 11 16 16 C 1.50679 * 109.54329 * 48.67226 * 15 14 12 17 17 C 1.38048 * 120.12315 * 146.33431 * 16 15 14 18 18 C 1.38882 * 119.96693 * 180.24460 * 17 16 15 19 19 N 1.39898 * 120.00419 * 179.72662 * 18 17 16 20 20 C 1.46498 * 119.99858 * 180.02562 * 19 18 17 21 21 C 1.50700 * 109.46769 * 179.72252 * 20 19 18 22 22 C 1.33638 * 126.03862 * 90.00191 * 21 20 19 23 23 N 1.31786 * 114.50007 * 179.97438 * 22 21 20 24 24 C 1.29027 * 117.12322 * 359.97438 * 23 22 21 25 25 S 1.70979 * 110.16711 * 359.72545 * 24 23 22 26 26 C 1.38905 * 119.98990 * 359.44824 * 18 17 16 27 27 C 1.38047 * 120.01369 * 0.25939 * 26 18 17 28 28 C 1.38845 * 119.83159 * 326.01304 * 16 15 14 29 29 H 0.97000 * 119.99683 * 0.02562 * 1 2 3 30 30 H 1.08991 * 109.47082 * 60.00446 * 9 7 2 31 31 H 1.09000 * 109.47362 * 300.00160 * 9 7 2 32 32 H 1.09001 * 109.47145 * 59.99761 * 10 9 7 33 33 H 1.09000 * 109.47050 * 300.00282 * 10 9 7 34 34 H 1.08992 * 109.39612 * 204.63766 * 14 12 11 35 35 H 1.08994 * 109.39934 * 84.90064 * 14 12 11 36 36 H 1.09005 * 109.46418 * 288.65036 * 15 14 12 37 37 H 1.09000 * 109.44818 * 168.68338 * 15 14 12 38 38 H 1.08001 * 120.01964 * 359.97398 * 17 16 15 39 39 H 0.97001 * 119.99696 * 359.72011 * 19 18 17 40 40 H 1.09004 * 109.46963 * 299.72046 * 20 19 18 41 41 H 1.08994 * 109.47567 * 59.72198 * 20 19 18 42 42 H 1.07999 * 122.75004 * 359.97438 * 22 21 20 43 43 H 1.08006 * 124.91472 * 180.02562 * 24 23 22 44 44 H 1.07999 * 119.99395 * 180.27641 * 26 18 17 45 45 H 1.08002 * 120.00488 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 7 1.5127 -4.9308 0.0033 12 6 1.1780 -5.5090 1.1713 13 8 1.4737 -4.9664 2.2152 14 6 0.4413 -6.8210 1.1975 15 6 -0.5390 -6.8912 0.0263 16 6 0.1666 -6.4983 -1.2458 17 6 -0.1828 -7.0901 -2.4430 18 6 0.4732 -6.7293 -3.6127 19 7 0.1237 -7.3327 -4.8255 20 6 0.8161 -6.9524 -6.0592 21 6 0.2605 -7.7475 -7.2126 22 6 -0.7663 -7.3919 -7.9904 23 7 -1.0622 -8.2609 -8.9360 24 6 -0.3418 -9.3295 -8.9993 25 16 0.8561 -9.3058 -7.7795 26 6 1.4724 -5.7650 -3.5793 27 6 1.8172 -5.1691 -2.3827 28 6 1.1652 -5.5342 -1.2123 29 1 -0.4850 0.8401 -0.0004 30 1 0.6241 -2.5575 -0.8880 31 1 0.6246 -2.5563 0.8919 32 1 2.8719 -3.6036 0.8927 33 1 2.8718 -3.6052 -0.8873 34 1 -0.1078 -6.9092 2.1349 35 1 1.1569 -7.6396 1.1202 36 1 -1.3695 -6.2086 0.2065 37 1 -0.9189 -7.9084 -0.0686 38 1 -0.9629 -7.8366 -2.4694 39 1 -0.5741 -8.0061 -4.8488 40 1 0.6675 -5.8888 -6.2462 41 1 1.8815 -7.1578 -5.9561 42 1 -1.3092 -6.4681 -7.8553 43 1 -0.4731 -10.1217 -9.7216 44 1 1.9795 -5.4811 -4.4896 45 1 2.5939 -4.4191 -2.3569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225537939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:57 Heat of formation + Delta-G solvation = 16.321762 kcal Electronic energy + Delta-G solvation = -28061.283872 eV Core-core repulsion = 24169.149971 eV Total energy + Delta-G solvation = -3892.133901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 357.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.00719 -40.67588 -39.88071 -37.69017 -36.49531 -35.08232 -34.87357 -32.43994 -31.68431 -30.86020 -29.06741 -27.34040 -27.07031 -25.54932 -24.74220 -23.89703 -23.14774 -21.95837 -21.05554 -19.73255 -19.23451 -18.85129 -18.51501 -17.70005 -17.62012 -16.84556 -16.59145 -16.45769 -16.09328 -15.70371 -15.32428 -15.12596 -15.07047 -14.82387 -14.75820 -14.59295 -14.48963 -14.22170 -14.10434 -13.88081 -13.65030 -13.33168 -13.21707 -12.88683 -12.77030 -12.59174 -12.39097 -12.28034 -12.07254 -12.01792 -11.66760 -11.45967 -11.34111 -10.79837 -10.62721 -10.61942 -10.36134 -9.96516 -9.91174 -9.63212 -8.25823 -7.92092 -6.38262 -0.34373 0.39047 0.44639 0.51723 0.77746 1.37317 1.39359 1.52515 1.65482 1.78711 2.00228 2.39338 2.63247 2.96199 3.08270 3.41986 3.52356 3.74613 3.77812 3.86971 4.08294 4.14536 4.24741 4.27601 4.39064 4.40073 4.42384 4.47659 4.61084 4.62632 4.78581 4.82173 4.82833 4.91967 5.01170 5.05974 5.14819 5.17655 5.28645 5.39532 5.46021 5.48163 5.69372 5.76121 5.85100 6.12311 6.36295 6.55499 6.71004 6.76623 6.86350 7.09036 7.31356 8.87767 Molecular weight = 357.13amu Principal moments of inertia in cm(-1) A = 0.010602 B = 0.002285 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.465624 B =12253.517543 C =14193.865063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.973 3.027 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.067 0.933 9 C 0.033 3.967 10 C 0.122 3.878 11 N -0.549 5.549 12 C 0.494 3.506 13 O -0.586 6.586 14 C -0.124 4.124 15 C -0.072 4.072 16 C -0.082 4.082 17 C -0.153 4.153 18 C 0.199 3.801 19 N -0.738 5.738 20 C 0.207 3.793 21 C -0.247 4.247 22 C 0.044 3.956 23 N -0.509 5.509 24 C 0.021 3.979 25 S 0.170 5.830 26 C -0.170 4.170 27 C -0.113 4.113 28 C 0.081 3.919 29 H 0.265 0.735 30 H -0.006 1.006 31 H -0.027 1.027 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.124 0.876 36 H 0.072 0.928 37 H 0.132 0.868 38 H 0.156 0.844 39 H 0.406 0.594 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.180 0.820 43 H 0.227 0.773 44 H 0.141 0.859 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.042 -25.870 -18.175 31.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.796 3.204 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.085 0.915 9 C -0.005 4.005 10 C 0.001 3.999 11 N -0.271 5.271 12 C 0.285 3.715 13 O -0.467 6.467 14 C -0.163 4.163 15 C -0.109 4.109 16 C -0.085 4.085 17 C -0.176 4.176 18 C 0.096 3.904 19 N -0.371 5.371 20 C 0.081 3.919 21 C -0.369 4.369 22 C -0.108 4.108 23 N -0.222 5.222 24 C -0.276 4.276 25 S 0.424 5.576 26 C -0.193 4.193 27 C -0.134 4.134 28 C -0.013 4.013 29 H 0.073 0.927 30 H 0.013 0.987 31 H -0.008 1.008 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.134 0.866 35 H 0.142 0.858 36 H 0.090 0.910 37 H 0.150 0.850 38 H 0.173 0.827 39 H 0.242 0.758 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.197 0.803 43 H 0.243 0.757 44 H 0.159 0.841 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.474 -26.036 -17.868 31.581 hybrid contribution -0.527 2.104 0.309 2.191 sum -0.053 -23.931 -17.558 29.682 Atomic orbital electron populations 1.70139 1.08062 1.27876 1.51229 1.26053 0.95809 1.03684 0.94327 0.85287 0.79128 0.78093 0.77859 1.18155 1.19794 1.20622 1.21533 0.93696 0.91611 1.51213 0.91493 1.19086 0.94272 0.92970 0.94200 1.21625 0.94797 0.81484 1.02018 1.45699 1.53994 1.21964 1.05441 1.21749 0.78993 0.88547 0.82176 1.90687 1.56338 1.66491 1.33163 1.21707 0.99712 0.92602 1.02309 1.20501 0.96520 1.04928 0.88925 1.19496 0.95218 0.96943 0.96806 1.20404 1.03417 1.04473 0.89262 1.17668 0.93779 0.92638 0.86332 1.44525 1.43252 1.46226 1.03077 1.19511 0.96067 0.97194 0.79142 1.25957 1.03964 1.01306 1.05641 1.22041 0.96605 1.00597 0.91591 1.66422 1.29439 1.03474 1.22908 1.29034 0.95468 1.00016 1.03078 1.84110 1.32551 1.15268 1.25709 1.20554 1.01140 0.99953 0.97625 1.20778 1.00220 1.00832 0.91592 1.17884 0.99416 0.98611 0.85424 0.92670 0.98717 1.00818 0.92108 0.89077 0.86611 0.85819 0.90990 0.85025 0.82670 0.75787 0.89966 0.90272 0.80326 0.75668 0.84113 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.32 13.29 21.45 0.28 -59.04 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.97 45.65 29.54 68.60 2.03 47.68 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.54 -32.35 9.11 25.60 0.23 -32.12 16 8 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 9 C 0.03 1.88 5.30 29.85 0.16 2.04 16 10 C 0.12 5.71 5.08 86.38 0.44 6.15 16 11 N -0.55 -22.21 2.70 -631.69 -1.70 -23.91 16 12 C 0.49 19.61 7.46 87.63 0.65 20.27 16 13 O -0.59 -28.87 16.61 -3.08 -0.05 -28.92 16 14 C -0.12 -3.14 6.07 29.75 0.18 -2.96 16 15 C -0.07 -1.54 5.99 29.81 0.18 -1.36 16 16 C -0.08 -2.11 5.66 -19.77 -0.11 -2.22 16 17 C -0.15 -3.04 9.53 22.38 0.21 -2.83 16 18 C 0.20 3.95 6.66 38.17 0.25 4.20 16 19 N -0.74 -10.31 5.73 -342.97 -1.97 -12.27 16 20 C 0.21 2.51 5.44 85.63 0.47 2.98 16 21 C -0.25 -2.91 5.97 24.64 0.15 -2.76 16 22 C 0.04 0.64 11.25 83.66 0.94 1.58 16 23 N -0.51 -8.02 10.54 -203.74 -2.15 -10.17 16 24 C 0.02 0.20 12.23 130.65 1.60 1.80 16 25 S 0.17 1.48 23.22 -56.49 -1.31 0.17 16 26 C -0.17 -4.00 9.31 22.38 0.21 -3.80 16 27 C -0.11 -3.48 9.33 22.37 0.21 -3.27 16 28 C 0.08 2.70 6.33 38.12 0.24 2.94 16 29 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 30 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H -0.03 -1.76 8.14 -2.39 -0.02 -1.78 16 32 H 0.06 3.00 7.40 -2.39 -0.02 2.99 16 33 H 0.09 3.80 5.81 -2.39 -0.01 3.79 16 34 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.12 2.45 8.14 -2.39 -0.02 2.44 16 36 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.13 1.63 8.06 -2.39 -0.02 1.61 16 38 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 39 H 0.41 4.63 8.48 -92.71 -0.79 3.85 16 40 H 0.08 1.04 7.95 -2.38 -0.02 1.02 16 41 H 0.08 0.88 7.95 -2.39 -0.02 0.86 16 42 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 43 H 0.23 0.66 8.06 -2.91 -0.02 0.63 16 44 H 0.14 2.68 6.73 -2.91 -0.02 2.66 16 45 H 0.12 3.86 6.01 -2.91 -0.02 3.84 16 Total: -1.00 -82.97 388.43 1.85 -81.12 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.25 Total: 14.28 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 6.47 Total: -8.93 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -5.53 Total: -105.39 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.05 Total: -28.92 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -1.31 Total: 0.17 kcal Total: -82.97 1.85 -81.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225537939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.444 kcal (2) G-P(sol) polarization free energy of solvation -82.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds