Wall clock time and date at job start Tue Mar 31 2020 06:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.26290 * 2 1 4 4 C 1.53743 * 110.29902 * 237.84295 * 2 1 3 5 5 C 1.51219 * 104.57855 * 241.07111 * 4 2 1 6 6 C 1.38189 * 130.97173 * 179.97438 * 5 4 2 7 7 C 1.38217 * 120.15076 * 179.97438 * 6 5 4 8 8 C 1.38299 * 119.82823 * 359.97438 * 7 6 5 9 9 C 1.37837 * 120.22570 * 0.02562 * 8 7 6 10 10 C 1.38557 * 108.55819 * 359.72857 * 5 4 2 11 11 N 1.39832 * 111.62027 * 0.45705 * 10 5 4 12 12 C 1.34776 * 124.97838 * 179.79997 * 11 10 5 13 13 O 1.21296 * 120.00025 * 185.06138 * 12 11 10 14 14 C 1.50701 * 120.00428 * 5.06417 * 12 11 10 15 15 H 1.08998 * 109.46511 * 308.06873 * 14 12 11 16 16 C 1.53000 * 109.47044 * 68.06617 * 14 12 11 17 17 C 1.53001 * 109.47208 * 60.00288 * 16 14 12 18 18 C 1.52995 * 109.47155 * 60.00188 * 17 16 14 19 19 C 1.53000 * 109.46909 * 299.99995 * 18 17 16 20 20 C 1.52995 * 109.47533 * 188.06560 * 14 12 11 21 21 H 1.08992 * 109.47124 * 179.97438 * 20 14 12 22 22 C 1.50706 * 109.47149 * 59.99583 * 20 14 12 23 23 O 1.21295 * 119.99660 * 0.02562 * 22 20 14 24 24 N 1.34774 * 120.00260 * 179.97438 * 22 20 14 25 25 C 1.37091 * 120.00183 * 180.02562 * 24 22 20 26 26 H 1.08003 * 119.99785 * 359.97438 * 25 24 22 27 27 C 1.38943 * 120.00207 * 180.02562 * 25 24 22 28 28 N 1.31417 * 119.99961 * 179.97438 * 27 25 24 29 29 Si 1.86801 * 119.99892 * 359.97438 * 27 25 24 30 30 H 1.48499 * 109.46949 * 90.00518 * 29 27 25 31 31 H 1.48502 * 109.47094 * 210.00180 * 29 27 25 32 32 H 1.48500 * 109.46966 * 330.00122 * 29 27 25 33 33 H 1.09001 * 109.47174 * 297.93727 * 1 2 3 34 34 H 1.09003 * 109.46988 * 57.93101 * 1 2 3 35 35 H 1.08999 * 109.47163 * 177.93433 * 1 2 3 36 36 H 1.09002 * 110.40900 * 359.84197 * 4 2 1 37 37 H 1.08993 * 110.41727 * 122.17312 * 4 2 1 38 38 H 1.08002 * 119.91822 * 0.02562 * 6 5 4 39 39 H 1.07996 * 120.08583 * 179.97438 * 7 6 5 40 40 H 1.08001 * 119.88864 * 179.97438 * 8 7 6 41 41 H 1.08000 * 119.86503 * 179.97438 * 9 8 7 42 42 H 1.09007 * 109.47018 * 299.99972 * 16 14 12 43 43 H 1.08992 * 109.47118 * 180.02562 * 16 14 12 44 44 H 1.09002 * 109.46599 * 299.99679 * 17 16 14 45 45 H 1.08999 * 109.46694 * 180.02562 * 17 16 14 46 46 H 1.08992 * 109.47124 * 59.99860 * 18 17 16 47 47 H 1.09002 * 109.47226 * 180.02562 * 18 17 16 48 48 H 1.09004 * 109.47432 * 180.02562 * 19 18 17 49 49 H 1.09002 * 109.47108 * 299.99864 * 19 18 17 50 50 H 0.96999 * 119.99651 * 0.02562 * 24 22 20 51 51 H 0.97006 * 119.99654 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0226 0.0000 4 6 2.0634 -0.7675 -1.2207 5 6 2.8594 -1.9111 -0.6333 6 6 3.5672 -2.9296 -1.2427 7 6 4.2248 -3.8732 -0.4763 8 6 4.1736 -3.7957 0.9036 9 6 3.4689 -2.7816 1.5159 10 6 2.8056 -1.8220 0.7483 11 7 2.0384 -0.7296 1.1647 12 6 1.8054 -0.3937 2.4489 13 8 1.0506 0.5193 2.7096 14 6 2.4825 -1.1524 3.5611 15 1 2.3167 -2.2211 3.4252 16 6 3.9845 -0.8620 3.5356 17 6 4.2173 0.6381 3.7262 18 6 3.6357 1.0776 5.0714 19 6 2.1337 0.7873 5.0968 20 6 1.9009 -0.7129 4.9062 21 1 2.3904 -1.2619 5.7105 22 6 0.4215 -0.9988 4.9313 23 8 -0.1148 -1.5047 3.9682 24 7 -0.3055 -0.6932 6.0242 25 6 -1.6513 -0.9537 6.0472 26 1 -2.1289 -1.4035 5.1893 27 6 -2.4009 -0.6382 7.1738 28 7 -3.6910 -0.8875 7.1956 29 14 -1.5748 0.1404 8.6573 30 1 -1.6108 1.6190 8.5246 31 1 -2.2934 -0.2634 9.8926 32 1 -0.1636 -0.3156 8.7341 33 1 -0.3633 0.4815 0.9079 34 1 -0.3633 0.5456 -0.8709 35 1 -0.3633 -1.0270 -0.0370 36 1 1.2371 -1.1482 -1.8211 37 1 2.7054 -0.1249 -1.8231 38 1 3.6071 -2.9879 -2.3205 39 1 4.7773 -4.6690 -0.9536 40 1 4.6868 -4.5327 1.5035 41 1 3.4324 -2.7268 2.5939 42 1 4.3989 -1.1752 2.5773 43 1 4.4744 -1.4111 4.3397 44 1 3.7275 1.1868 2.9218 45 1 5.2873 0.8449 3.7076 46 1 4.1255 0.5289 5.8757 47 1 3.8011 2.1464 5.2070 48 1 1.7192 1.1008 6.0550 49 1 1.6439 1.3361 4.2924 50 1 0.1234 -0.2889 6.7946 51 1 -4.2142 -0.6676 7.9823 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245803057.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:42 Heat of formation + Delta-G solvation = -28.978837 kcal Electronic energy + Delta-G solvation = -34082.064554 eV Core-core repulsion = 29946.472406 eV Total energy + Delta-G solvation = -4135.592148 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 356.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.65968 -39.81194 -37.96788 -37.10453 -35.98192 -33.93675 -33.47638 -31.68213 -30.96062 -30.70526 -30.46856 -29.69827 -26.46584 -25.41218 -24.12609 -23.01135 -22.47835 -21.85514 -21.32294 -20.54058 -19.28873 -18.99819 -18.27007 -16.72929 -16.62532 -16.21756 -15.96581 -15.54348 -15.09054 -14.70230 -14.63366 -14.38470 -14.30506 -13.76873 -13.69129 -13.56830 -13.29029 -13.16531 -13.10106 -12.91583 -12.60218 -12.42963 -12.34591 -12.23791 -11.98931 -11.80897 -11.78998 -11.63151 -11.50549 -11.15692 -11.04197 -11.01878 -10.76391 -10.69597 -10.54903 -10.35461 -10.19765 -10.00521 -9.86930 -9.47880 -9.13666 -8.85440 -8.37279 -8.08604 -7.71951 -6.23578 -3.73628 1.24355 1.27424 2.83104 2.97241 3.07602 3.12502 3.19413 3.72518 3.85408 4.16860 4.26659 4.39998 4.51432 4.65344 4.70723 4.85679 4.90912 4.94915 5.01013 5.03173 5.21691 5.24546 5.27857 5.34712 5.35836 5.39018 5.42566 5.55008 5.55993 5.58377 5.64390 5.70806 5.74658 5.81029 5.87005 5.93608 5.97788 6.02273 6.04681 6.16543 6.20558 6.22026 6.31796 6.35272 6.37963 6.43533 6.46877 6.60041 6.76499 6.91793 7.61141 7.65278 8.23751 8.36874 8.67800 9.03459 9.51879 9.92930 10.89987 Molecular weight = 356.19amu Principal moments of inertia in cm(-1) A = 0.013617 B = 0.003479 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.765804 B = 8046.123063 C = 8607.155323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.136 3.864 3 H 0.085 0.915 4 C -0.082 4.082 5 C -0.144 4.144 6 C -0.074 4.074 7 C -0.153 4.153 8 C -0.087 4.087 9 C -0.169 4.169 10 C 0.164 3.836 11 N -0.553 5.553 12 C 0.554 3.446 13 O -0.487 6.487 14 C -0.089 4.089 15 H 0.108 0.892 16 C -0.125 4.125 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.132 4.132 20 C -0.084 4.084 21 H 0.089 0.911 22 C 0.466 3.534 23 O -0.573 6.573 24 N -0.589 5.589 25 C -0.299 4.299 26 H 0.118 0.882 27 C 0.040 3.960 28 N -0.885 5.885 29 Si 0.876 3.124 30 H -0.271 1.271 31 H -0.277 1.277 32 H -0.269 1.269 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.144 0.856 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.103 0.897 50 H 0.370 0.630 51 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.965 -0.354 -13.210 24.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.034 3.966 3 H 0.103 0.897 4 C -0.120 4.120 5 C -0.147 4.147 6 C -0.093 4.093 7 C -0.172 4.172 8 C -0.105 4.105 9 C -0.190 4.190 10 C 0.067 3.933 11 N -0.276 5.276 12 C 0.345 3.655 13 O -0.359 6.359 14 C -0.111 4.111 15 H 0.126 0.874 16 C -0.162 4.162 17 C -0.157 4.157 18 C -0.154 4.154 19 C -0.169 4.169 20 C -0.106 4.106 21 H 0.107 0.893 22 C 0.252 3.748 23 O -0.456 6.456 24 N -0.227 5.227 25 C -0.428 4.428 26 H 0.135 0.865 27 C -0.162 4.162 28 N -0.525 5.525 29 Si 0.703 3.297 30 H -0.196 1.196 31 H -0.202 1.202 32 H -0.195 1.195 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.161 0.839 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.121 0.879 50 H 0.202 0.798 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 19.843 -0.028 -13.437 23.965 hybrid contribution 0.332 0.459 1.363 1.476 sum 20.175 0.432 -12.074 23.516 Atomic orbital electron populations 1.22173 0.93237 1.03045 1.03711 1.21584 0.95861 0.95881 0.83274 0.89722 1.21216 0.99196 0.94542 0.96996 1.20017 1.02940 0.98997 0.92778 1.20348 0.96143 0.93221 0.99588 1.20946 1.02391 1.00003 0.93896 1.20876 0.97904 0.96978 0.94781 1.21350 1.01179 0.95263 1.01159 1.18399 0.92660 0.88867 0.93340 1.46156 1.48493 1.26422 1.06540 1.20230 0.80452 0.83559 0.81291 1.90604 1.33597 1.30164 1.81567 1.21355 0.95110 1.01415 0.93190 0.87398 1.21890 0.93464 0.97523 1.03329 1.21547 1.00438 0.95439 0.98253 1.21542 0.96142 1.00804 0.96877 1.21939 0.95980 0.94973 1.04027 1.21069 0.95467 0.98073 0.96034 0.89318 1.19537 0.87506 0.83700 0.84029 1.90535 1.72424 1.47561 1.35072 1.42131 1.09205 1.56644 1.14689 1.19420 0.81326 1.38513 1.03512 0.86450 1.25012 0.95423 0.97931 0.97844 1.69629 1.05377 1.47485 1.30036 0.86714 0.79405 0.80344 0.83232 1.19616 1.20236 1.19499 0.89931 0.91590 0.92118 0.89147 0.89494 0.86044 0.85904 0.85552 0.83888 0.90220 0.90342 0.92288 0.91810 0.92087 0.91980 0.92030 0.87869 0.79768 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 9.06 37.16 0.34 -2.06 16 2 C 0.14 1.80 3.68 -67.52 -0.25 1.56 16 3 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 4 C -0.08 -0.84 6.58 -27.24 -0.18 -1.02 16 5 C -0.14 -1.68 6.23 -104.27 -0.65 -2.33 16 6 C -0.07 -0.72 10.04 -39.61 -0.40 -1.12 16 7 C -0.15 -1.41 10.06 -39.57 -0.40 -1.81 16 8 C -0.09 -0.86 10.02 -39.71 -0.40 -1.26 16 9 C -0.17 -2.05 7.13 -39.21 -0.28 -2.33 16 10 C 0.16 2.24 6.09 -83.57 -0.51 1.73 16 11 N -0.55 -8.51 2.89 -105.84 -0.31 -8.82 16 12 C 0.55 9.87 4.25 -10.99 -0.05 9.82 16 13 O -0.49 -10.27 10.79 -13.12 -0.14 -10.41 16 14 C -0.09 -1.41 1.28 -91.77 -0.12 -1.52 16 15 H 0.11 1.75 5.69 -51.93 -0.30 1.45 16 16 C -0.12 -1.45 4.28 -26.73 -0.11 -1.56 16 17 C -0.12 -1.38 5.70 -26.73 -0.15 -1.53 16 18 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 19 C -0.13 -2.14 4.83 -26.73 -0.13 -2.27 16 20 C -0.08 -1.48 2.28 -91.77 -0.21 -1.69 16 21 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 22 C 0.47 11.08 6.21 -10.98 -0.07 11.01 16 23 O -0.57 -15.75 13.97 -13.12 -0.18 -15.94 16 24 N -0.59 -14.78 4.98 -10.96 -0.05 -14.83 16 25 C -0.30 -8.80 10.16 -14.94 -0.15 -8.95 16 26 H 0.12 3.95 7.39 -52.48 -0.39 3.56 16 27 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 28 N -0.88 -26.68 13.96 55.50 0.77 -25.90 16 29 Si 0.88 20.20 27.74 -169.99 -4.71 15.48 16 30 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 31 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 32 H -0.27 -5.67 6.52 56.52 0.37 -5.30 16 33 H 0.08 1.52 6.60 -51.93 -0.34 1.18 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 0.84 7.70 -51.93 -0.40 0.44 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.14 1.70 3.44 -52.49 -0.18 1.52 16 42 H 0.08 0.88 5.15 -51.93 -0.27 0.61 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.78 7.22 -51.93 -0.37 0.41 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.99 7.57 -51.93 -0.39 0.60 16 49 H 0.10 1.95 5.23 -51.93 -0.27 1.68 16 50 H 0.37 8.30 5.18 -40.82 -0.21 8.09 16 51 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 381.28 15.07 5.75 5.75 Total: -1.00 -35.44 381.28 -10.21 -45.65 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -7.37 Total: 14.88 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -3.97 Total: -5.87 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.41 Total: -49.55 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.32 Total: -26.35 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.71 Total: 15.48 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.44 -10.21 -45.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245803057.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.672 kcal (2) G-P(sol) polarization free energy of solvation -35.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds